Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Reverse (-)

20508302 .. 20511722

Gene Structure 3421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGATTGAAATTTGAGGAGGAGTTCTTAGCTTGCTGCGCAAGCACCAAATTCGCCAAAGAAATGGCGGAGGCGTCACCTTTCTCATCTCTCGACGAAGCTGTGACTGCCGCCAGAGACATCTGGTTCAACAAGGTCGATGTCAATGGCTGGCTCCAATCGTTCTCGGCTCATCCTCAGATCGGAAACTCGCCTTCGCCTTCTTCTCACTCCACCTCTGCTCAGTGGAGTAAGGGAGAGCAGGCAACTGCTGTAGCAACTGCCACTAGTTCTAGCTTGCAGGAACTGGCTGAATGGAATGCTAAATACAGGCAGAAGTTTGGTTTTGTATTTCTTATTTGTGCATCTGGAAAGAGTTCTGATGGGATACTTGCTGAGTTGAAGAAACGATATCCAAACAGGCCAATAGTTGAGTTCGAGATTGCAGCTCAGGAGCAGATGAAAATAACTGAGCTACGCCTTGCGAAGCTGTTTGCAGCAAAAGAAAATGTTACTTCCACAGGCAACAAGAATCCTACAATTGTTGCAAAGAAAGCGGAAGAAGATCGTGTGAGCATTATTGGAGGGCATCTAACTGCTACTGCTTCTGAAGCTTCATCAGTAAAAACTTCTCAAGCTCCAACTCGAACCCGTCCACCCATCACAACCCATGTCTTGGATGTTTCTCGAGGATCTCCAGGTGCTGGAATTGAAGTGTGTTTAGAAATGTGGAAGGGTGTTCAACCTCGTCCGGTGTTTGGCGAGTCAAATGCAGGTGGTTGGGTATTTCAAGGGTCTTCGACTACAGATAATGATGGGCGAAGTGGTCAATTGATGAGCATCGTTGATGTAGTGAACCCAGGCATATACAAGATAAACTTTAACACAGGTAAGTTCTGCCCAGGCGGGTTCTTCCCTTATGTTTCTATCGTGTTTGAGATCAGAGAGTCACAGAAATTGGAACATTTTCATGTTCCTCTGCTGCTGTCGCCTTTCTCATTCACAACATACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

334

Amino Acids

36.23

Weight (kDa)

7.65

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OHCU_decarbox	PF09349	5 - 155	4e-35	OHCU decarboxylase
Transthyretin	PF00576	214 - 332	6.7e-29	HIUase/Transthyretin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
Acc16I	TGCGCA	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	743
AccB7I	CCANNNNNTGG	2 cut(s)	655, 683
AciI	CCGC	4 cut(s)	68, 111, 536, 885
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	2 cut(s)	11, 50
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	182, 655, 683, 737
AgsI	TTSAA	6 cut(s)	10, 130, 382, 692, 722, 770
AhlI	ACTAGT	1 cut(s)	266
AjnI	CCWGG	3 cut(s)	676, 838, 880
AluBI	AGCT	9 cut(s)	32, 101, 276, 428, 454, 469, 593, 617, 999
AluI	AGCT	9 cut(s)	32, 101, 276, 428, 454, 469, 593, 617, 999
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	2 cut(s)	286, 683
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	4 cut(s)	36, 425, 476, 961
ApoI	RAATTY	2 cut(s)	11, 50
Asp700I	GAANNNNTTC	2 cut(s)	355, 945
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	4 cut(s)	23, 437, 488, 948
BccI	CCATC	3 cut(s)	356, 647, 788
BcgI	CGANNNNNNTGC	4 cut(s)	34, 68, 731, 765
BciT130I	CCWGG	3 cut(s)	678, 840, 882
BciVI	GTATCC	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	111
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	267, 273, 1000
BfmI	CTRYAG	2 cut(s)	252, 783
BfuAI	ACCTGC	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	5 cut(s)	37, 111, 426, 477, 962
BlsI	GCNGC	5 cut(s)	38, 112, 427, 478, 963
Bme1390I	CCNGG	3 cut(s)	678, 840, 882
BmeT110I	CYCGRG	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	3 cut(s)	678, 840, 882
BmsI	GCATC	3 cut(s)	353, 577, 828
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	838, 880, 991
BsaWI	WCCGGW	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 655, 683, 737
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	818
BseBI	CCWGG	3 cut(s)	678, 840, 882
BseDI	CCNNGG	3 cut(s)	838, 880, 991
BseGI	GGATG	2 cut(s)	172, 664
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	4 cut(s)	182, 655, 683, 737
BseMII	CTCAG	5 cut(s)	191, 236, 366, 441, 443
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	4 cut(s)	23, 437, 488, 948
BshFI	GGCC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	731
BslI	CCNNNNNNNGG	4 cut(s)	182, 655, 683, 737
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	666
Bsp143I	GATC	4 cut(s)	180, 544, 671, 918
BspACI	CCGC	4 cut(s)	68, 111, 536, 885
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	5 cut(s)	190, 235, 367, 442, 442
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	743
BspPI	GGATC	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	838, 880, 991
BssMI	GATC	4 cut(s)	180, 544, 671, 918
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	3 cut(s)	678, 840, 882
Bst4CI	ACNGT	1 cut(s)	992
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	5 cut(s)	34, 43, 152, 243, 278
BstDEI	CTNAG	6 cut(s)	28, 177, 222, 375, 429, 450
BstDSI	CCRYGG	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	172, 664
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	183, 547, 674, 921
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	4 cut(s)	180, 544, 671, 918
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 42, 107, 533, 590, 967
BstNI	CCWGG	3 cut(s)	678, 840, 882
BstSCI	CCNGG	3 cut(s)	676, 838, 880
BstSFI	CTRYAG	2 cut(s)	252, 783
BstV1I	GCAGC	4 cut(s)	23, 437, 488, 948
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	172, 664
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	5 cut(s)	34, 43, 152, 243, 278
CaiI	CAGNNNCTG	2 cut(s)	286, 683
CfoI	GCGC	1 cut(s)	41
CseI	GACGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	650, 950
DdeI	CTNAG	6 cut(s)	28, 177, 222, 375, 429, 450
DpnI	GATC	4 cut(s)	182, 546, 673, 920
DpnII	GATC	4 cut(s)	180, 544, 671, 918
EciI	GGCGGA	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	666
EcoRII	CCWGG	3 cut(s)	676, 838, 880
EcoRV	GATATC	1 cut(s)	392
FaeI	CATG	2 cut(s)	653, 953
FaiI	YATR	6 cut(s)	651, 845, 847, 900, 951, 988
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FatI	CATG	2 cut(s)	649, 949
FauI	CCCGC	1 cut(s)	878
Fnu4HI	GCNGC	5 cut(s)	37, 111, 426, 477, 962
FokI	GGATG	2 cut(s)	159, 671
Fsp4HI	GCNGC	5 cut(s)	37, 111, 426, 477, 962
FspBI	CTAG	3 cut(s)	267, 273, 1000
FspI	TGCGCA	1 cut(s)	40
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	37, 111, 426, 477, 962
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	1 cut(s)	731
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	653, 953
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	3 cut(s)	511, 743, 926
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	635, 835
Hpy188I	TCNGA	5 cut(s)	180, 185, 361, 589, 923
Hpy188III	TCNNGA	5 cut(s)	92, 348, 418, 431, 666
Hpy8I	GTNNAC	2 cut(s)	635, 835
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	204, 210, 706
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4V	TGCA	6 cut(s)	280, 344, 425, 476, 527, 752
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 42, 107, 533, 590, 967
HpyF3I	CTNAG	6 cut(s)	28, 177, 222, 375, 429, 450
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	653, 953
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	180, 544, 671, 918
LmnI	GCTCC	3 cut(s)	159, 433, 622
Lsp1109I	GCAGC	4 cut(s)	23, 437, 488, 948
LweI	GCATC	3 cut(s)	353, 577, 828
MaeI	CTAG	3 cut(s)	267, 273, 1000
MaeIII	GTNAC	4 cut(s)	75, 103, 490, 927
MalI	GATC	4 cut(s)	182, 546, 673, 920
MboI	GATC	4 cut(s)	180, 544, 671, 918
MboII	GAAGA	6 cut(s)	195, 394, 551, 554, 768, 883
MfeI	CAATTG	2 cut(s)	519, 809
MflI	RGATCY	1 cut(s)	671
MluCI	AATT	6 cut(s)	11, 50, 519, 687, 809, 935
MlyI	GAGTC	2 cut(s)	752, 935
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	9 cut(s)	10, 13, 64, 186, 226, 557, 662, 735, 966
MroXI	GAANNNNTTC	2 cut(s)	355, 945
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	948
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	3 cut(s)	678, 840, 882
MunI	CAATTG	2 cut(s)	519, 809
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	3 cut(s)	678, 840, 882
MwoI	GCNNNNNNNGC	6 cut(s)	38, 42, 107, 533, 590, 967
NdeII	GATC	4 cut(s)	180, 544, 671, 918
NlaIII	CATG	2 cut(s)	653, 953
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	3 cut(s)	75, 103, 927
NsbI	TGCGCA	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	666
PaqCI	CACCTGC	1 cut(s)	743
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	2 cut(s)	355, 945
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	2 cut(s)	655, 683
PkrI	GCNGC	5 cut(s)	38, 112, 427, 478, 963
PleI	GAGTC	2 cut(s)	751, 934
PpsI	GAGTC	2 cut(s)	751, 934
Psp6I	CCWGG	3 cut(s)	676, 838, 880
PspGI	CCWGG	3 cut(s)	676, 838, 880
PspN4I	GGNNCC	1 cut(s)	155
PstNI	CAGNNNCTG	2 cut(s)	286, 683
PsuI	RGATCY	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	5 cut(s)	37, 111, 426, 477, 962
Sau3AI	GATC	4 cut(s)	180, 544, 671, 918
SchI	GAGTC	2 cut(s)	752, 935
ScrFI	CCNGG	3 cut(s)	678, 840, 882
SfaNI	GCATC	3 cut(s)	353, 577, 828
SfcI	CTRYAG	2 cut(s)	252, 783
Sfr274I	CTCGAG	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	2 cut(s)	612, 666
SmoI	CTYRAG	2 cut(s)	612, 666
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	6 cut(s)	11, 50, 519, 687, 809, 935
SsiI	CCGC	4 cut(s)	68, 111, 536, 885
SspMI	CTAG	3 cut(s)	267, 273, 1000
StyD4I	CCNGG	3 cut(s)	676, 838, 880
TaaI	ACNGT	1 cut(s)	992
TaqI	TCGA	6 cut(s)	93, 138, 417, 625, 667, 779
TasI	AATT	6 cut(s)	11, 50, 519, 687, 809, 935
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	3 cut(s)	75, 103, 927
TseI	GCWGC	4 cut(s)	36, 425, 476, 961
Tsp45I	GTSAC	3 cut(s)	75, 103, 927
TspDTI	ATGAA	3 cut(s)	455, 585, 938
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	2 cut(s)	655, 683
XapI	RAATTY	2 cut(s)	11, 50
XhoI	CTCGAG	1 cut(s)	666
XmnI	GAANNNNTTC	2 cut(s)	355, 945
XspI	CTAG	3 cut(s)	267, 273, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.