Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Forward (+)

35611165 .. 35617559

Gene Structure 6395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGGATTCAAATTTGAGGAGCTAGAATTCTTCGCTTGCTGTGGAAGCTCCAAATTCGCCAAAGAAATGTCCAAGGCCTCTCCTTTCTCTTCTCTCGACGAAGCCGTGACTGCGGCCAGAGACATTTGGTTCAACAAGGTCGACGTCACCGGTTGGCTTCAGGCCTTCTCCGCTCATCCTCAGATCGGCCACAATCCTTCTCCTTCTTCCCATTCCACCTCTGCTCAATGGAGCAAAGGAGAGCAGTCAACTGCTTTTGCAACTGCTACTAGTTCAAGCTTACAGGAGCTCTCTCAATGGAATACTAAATACAGGGAAAAGTTTGGGTTTGTATTTCTTATTTGTGCATCGGGAAAGAGCACTGATGGGATACTTGCTGAATTGAAGAGACGATATCCAAATAGGCCTATCGTTGAGTTTGAGATTGCGGCTGAGGAGCAGATGAAAATAACAGAATTACGTCTTGGGAAACTTTTCTCAACTAAAGAAAAGGTTCCTTCAACAGGCAACATGAATCCCACAGTTGCTGCAAAGAAAGTGGAAGAAGATCGTGTGAGCATTATTGGAGGTCATCTAAGTGCTTCTTCTGAAATTTCAGCTGTAAAAACTCAGACTCCAACTCGAACCCGTCCACCCATCACAACCCATGTCTTGGACGTTTCTCGAGGATCTCCGGGTGCAGGCATTGAGGTATGTTTAGAAATGTGGAAGGGTCATCAACCTCGTCCTGTGTTTGGCGAGTCAGCTATAGGCGGTTGGGTATTTCAAGGGTCTTCAACTACGAATAGTGATGGGCGAAGTGGTCAGTTGTTGAGCATAGTTGATGCAGTGAACCCAGGGATATACAGGATAAGTTTTAACACCGGCAAGTACTGCCCAGGTGGGTTCTTTCCTTATGTTTCCATTGTGTTTGAAATCAGGGAGTCACAGAAGTTGGAACATTTTCATGTTCCTCTGCTGCTGTCACCTTTCTCATTCTCAACTTACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

333

Amino Acids

36.57

Weight (kDa)

8.21

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OHCU_decarbox	PF09349	11 - 156	4.6e-34	OHCU decarboxylase
Transthyretin	PF00576	214 - 332	2.3e-30	HIUase/Transthyretin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	4 cut(s)	116, 174, 431, 756
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	2 cut(s)	117, 190
AcsI	RAATTY	4 cut(s)	14, 29, 56, 594
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	5 cut(s)	188, 506, 655, 683, 737
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	8 cut(s)	13, 136, 279, 388, 504, 770, 780, 917
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	838, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	7 cut(s)	25, 51, 282, 292, 602, 749, 999
AluI	AGCT	7 cut(s)	25, 51, 282, 292, 602, 749, 999
Alw21I	GWGCWC	2 cut(s)	294, 365
Alw26I	GTCTC	2 cut(s)	117, 385
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	5 cut(s)	78, 117, 165, 190, 407
ApeKI	GCWGC	2 cut(s)	530, 961
ApoI	RAATTY	4 cut(s)	14, 29, 56, 594
AsiGI	ACCGGT	1 cut(s)	152
Asp700I	GAANNNNTTC	3 cut(s)	476, 495, 945
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	2 cut(s)	142, 960
AvaI	CYCGRG	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	2 cut(s)	294, 365
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	517, 948
BccI	CCATC	3 cut(s)	362, 647, 788
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	840, 882
BciVI	GTATCC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	117, 385
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	3 cut(s)	26, 273, 1000
BfmI	CTRYAG	1 cut(s)	750
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	4 cut(s)	117, 432, 531, 962
BlsI	GCNGC	4 cut(s)	118, 433, 532, 963
BmcAI	AGTACT	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	678, 840, 882
BmeT110I	CYCGRG	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	3 cut(s)	678, 840, 882
BmsI	GCATC	2 cut(s)	359, 817
BpiI	GAAGAC	1 cut(s)	768
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	75, 838, 839, 880, 991
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 506, 655, 683, 737
Bse118I	RCCGGY	2 cut(s)	152, 866
BseBI	CCWGG	2 cut(s)	840, 882
BseDI	CCNNGG	5 cut(s)	75, 838, 839, 880, 991
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	5 cut(s)	188, 506, 655, 683, 737
BseMII	CTCAG	3 cut(s)	197, 426, 626
BseRI	GAGGAG	2 cut(s)	35, 452
BseXI	GCAGC	2 cut(s)	517, 948
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	5 cut(s)	80, 119, 167, 192, 409
BshTI	ACCGGT	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	294, 365
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	3 cut(s)	153, 677, 867
BslI	CCNNNNNNNGG	5 cut(s)	188, 506, 655, 683, 737
BsmAI	GTCTC	2 cut(s)	117, 385
BsmBI	CGTCTC	1 cut(s)	385
BsnI	GGCC	5 cut(s)	80, 119, 167, 192, 409
BsoBI	CYCGRG	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	294, 365
Bsp143I	GATC	3 cut(s)	186, 550, 671
BspACI	CCGC	4 cut(s)	116, 174, 431, 756
BspANI	GGCC	5 cut(s)	80, 119, 167, 192, 409
BspCNI	CTCAG	3 cut(s)	196, 427, 625
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	679
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	2 cut(s)	152, 866
BssAI	RCCGGY	2 cut(s)	152, 866
BssECI	CCNNGG	5 cut(s)	75, 838, 839, 880, 991
BssMI	GATC	3 cut(s)	186, 550, 671
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	840, 882
Bst4CI	ACNGT	2 cut(s)	526, 992
Bst6I	CTCTTC	2 cut(s)	97, 383
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	40, 685
BstDEI	CTNAG	4 cut(s)	183, 435, 578, 612
BstDSI	CCRYGG	1 cut(s)	991
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	189, 553, 674
BstMAI	GTCTC	2 cut(s)	117, 385
BstMBI	GATC	3 cut(s)	186, 550, 671
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 113, 173, 876
BstNI	CCWGG	2 cut(s)	840, 882
BstSCI	CCNGG	3 cut(s)	676, 838, 880
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	517, 948
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	5 cut(s)	80, 119, 167, 192, 409
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	2 cut(s)	363, 837
Cac8I	GCNNGC	2 cut(s)	40, 685
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	2 cut(s)	152, 866
Csp6I	GTAC	1 cut(s)	874
CspAI	ACCGGT	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	3 cut(s)	514, 650, 950
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	4 cut(s)	183, 435, 578, 612
DpnI	GATC	3 cut(s)	188, 552, 673
DpnII	GATC	3 cut(s)	186, 550, 671
EaeI	YGGCCR	2 cut(s)	117, 190
Eam1104I	CTCTTC	2 cut(s)	97, 383
EarI	CTCTTC	2 cut(s)	97, 383
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	3 cut(s)	80, 167, 409
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	838, 880
EcoRV	GATATC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	3 cut(s)	517, 653, 953
FaiI	YATR	8 cut(s)	515, 651, 697, 752, 821, 847, 900, 951
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FatI	CATG	3 cut(s)	513, 649, 949
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	117, 432, 531, 962
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	117, 432, 531, 962
FspBI	CTAG	3 cut(s)	26, 273, 1000
GluI	GCNGC	4 cut(s)	117, 432, 531, 962
HaeIII	GGCC	5 cut(s)	80, 119, 167, 192, 409
HapII	CCGG	3 cut(s)	153, 677, 867
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	517, 653, 953
HincII	GTYRAC	2 cut(s)	145, 252
HindII	GTYRAC	2 cut(s)	145, 252
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	9, 517, 616, 743, 926
HpaII	CCGG	3 cut(s)	153, 677, 867
HphI	GGTGA	2 cut(s)	142, 960
Hpy166II	GTNNAC	4 cut(s)	145, 252, 635, 835
Hpy188I	TCNGA	3 cut(s)	186, 592, 615
Hpy188III	TCNNGA	3 cut(s)	98, 354, 666
Hpy8I	GTNNAC	4 cut(s)	145, 252, 635, 835
Hpy99I	CGWCG	2 cut(s)	104, 149
HpyAV	CCTTC	5 cut(s)	178, 210, 216, 510, 706
HpyCH4III	ACNGT	2 cut(s)	526, 992
HpyCH4IV	ACGT	3 cut(s)	147, 463, 660
HpyCH4V	TGCA	5 cut(s)	263, 350, 533, 683, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 113, 173, 876
HpyF3I	CTNAG	4 cut(s)	183, 435, 578, 612
HpySE526I	ACGT	3 cut(s)	147, 463, 660
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	517, 653, 953
Kzo9I	GATC	3 cut(s)	186, 550, 671
LmnI	GCTCC	5 cut(s)	22, 56, 234, 289, 439
Lsp1109I	GCAGC	2 cut(s)	517, 948
LweI	GCATC	2 cut(s)	359, 817
MaeI	CTAG	3 cut(s)	26, 273, 1000
MaeII	ACGT	3 cut(s)	147, 463, 660
MaeIII	GTNAC	4 cut(s)	109, 148, 927, 966
MalI	GATC	3 cut(s)	188, 552, 673
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	186, 550, 671
MboII	GAAGA	8 cut(s)	25, 84, 201, 400, 557, 560, 579, 768
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	2 cut(s)	294, 365
MluCI	AATT	6 cut(s)	14, 29, 56, 383, 458, 594
MlyI	GAGTC	3 cut(s)	610, 752, 935
MmeI	TCCRAC	2 cut(s)	644, 918
MroXI	GAANNNNTTC	3 cut(s)	476, 495, 945
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	2 cut(s)	579, 948
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	3 cut(s)	153, 677, 867
MspR9I	CCNGG	3 cut(s)	678, 840, 882
MvaI	CCWGG	2 cut(s)	840, 882
MwoI	GCNNNNNNNGC	4 cut(s)	48, 113, 173, 876
NciI	CCSGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	186, 550, 671
NlaIII	CATG	3 cut(s)	517, 653, 953
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	4 cut(s)	109, 148, 927, 966
PaeR7I	CTCGAG	1 cut(s)	666
PasI	CCCWGGG	1 cut(s)	839
PceI	AGGCCT	3 cut(s)	80, 167, 409
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	3 cut(s)	476, 495, 945
PfeI	GAWTC	2 cut(s)	9, 517
PflMI	CCANNNNNTGG	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	118, 433, 532, 963
PleI	GAGTC	3 cut(s)	610, 751, 934
PpsI	GAGTC	3 cut(s)	610, 751, 934
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	838, 880
PspGI	CCWGG	2 cut(s)	838, 880
PspN4I	GGNNCC	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	2 cut(s)	579, 948
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	4 cut(s)	117, 432, 531, 962
Sau3AI	GATC	3 cut(s)	186, 550, 671
ScaI	AGTACT	1 cut(s)	875
SchI	GAGTC	3 cut(s)	610, 752, 935
ScrFI	CCNGG	3 cut(s)	678, 840, 882
SduI	GDGCHC	2 cut(s)	294, 365
SfaNI	GCATC	2 cut(s)	359, 817
SfcI	CTRYAG	1 cut(s)	750
Sfr274I	CTCGAG	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	579, 948
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	6 cut(s)	14, 29, 56, 383, 458, 594
SseBI	AGGCCT	3 cut(s)	80, 167, 409
SsiI	CCGC	4 cut(s)	116, 174, 431, 756
SspMI	CTAG	3 cut(s)	26, 273, 1000
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	3 cut(s)	80, 167, 409
StyD4I	CCNGG	3 cut(s)	676, 838, 880
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	526, 992
TaiI	ACGT	3 cut(s)	150, 466, 663
TaqI	TCGA	4 cut(s)	99, 144, 625, 667
TasI	AATT	6 cut(s)	14, 29, 56, 383, 458, 594
TatI	WGTACW	1 cut(s)	873
TauI	GCSGC	2 cut(s)	119, 434
TfiI	GAWTC	2 cut(s)	9, 517
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	370, 837
TseFI	GTSAC	4 cut(s)	109, 148, 927, 966
TseI	GCWGC	2 cut(s)	530, 961
Tsp45I	GTSAC	4 cut(s)	109, 148, 927, 966
TspDTI	ATGAA	3 cut(s)	461, 530, 938
TspRI	CASTG	2 cut(s)	370, 837
Van91I	CCANNNNNTGG	1 cut(s)	655
XagI	CCTNNNNNAGG	1 cut(s)	504
XapI	RAATTY	4 cut(s)	14, 29, 56, 594
XhoI	CTCGAG	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	3 cut(s)	476, 495, 945
XspI	CTAG	3 cut(s)	26, 273, 1000
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.