Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Forward (+)

16767837 .. 16771104

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGATTACAATTTGAGGAGGACGAGTTCTTAGCATGCTGTGGAAGCACCAAATTCGCCAAAGAAATGGCGAAGGCATCCCCTTTCTCATCTCTCGACGAAGCTGTGACGGCGGCCAGAGAAATTTGGTTCAACCAGGTTGATGTCCATGCTTGGATCCAAGCGTTCTCTGCGCATCCTCAGATCGGACACTCGTCTTCTTCTTCTAACGCCACCTCTGCTCAGTGGAGTAAGGGAGAGCAGGCAACTGCCTTTGCAACTGCCACTAATTCTAGCTTGCAGGAACTGTCTGAATGGAATGCTAAATACAGGCAGAAGTTTGGGTTTATATTTCTAATTTGTGCATCTGGAAAGAGTACTGATGGGATACTTTCTGAGTTGAAGAAACGATATCCAAACAGGCCGATAGCTGAGTTTGAGATTGCAGCTCAGGAGCAGATGAAAATAACGGAACTCCGTCTTGCGAAGCTCTTTTCAACCAAAGAAAATGTTACCTCCACATGCAACAAGAATCCCACACTTGCGAAGAAAGTGGAAGAAGATCGTGTGAGCGTTATTGGAGCGCATCTAACTGCTGCTTCCGATGCTTCATCTGTGAAAAAATCTCAAGCTCCACCTCGAACCCGTCCACCCATCACAACCCATGTCTTGGATGTTTCTCAAGGATCTCCAGGTGCCGGTGTTGAGGTACGTTTGGAAATGTGGAAGGGTCCTCAACCTCGTCCCATGTTTGGTGAGTCAGATGTAGGTGATTGGCTGTGTCTTGGGTGTTCAACTACGGATAATGATGGTCGAATTGGTCAGTTGATGAGCATAGTTGATGTAGTGAACCCAGGCATATACAGGATAAATTTTAACACAGGTAAGTACTACCCGGGTGGGTTCTTTCCTTATGTTTCTATCGTGTTTGAAATCAGAGAGTCACAGAAGTGGGAACATTTTCATGTTCCTCTGCTGCTGTCACCTTTCTCATTCACAACGTACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

332

Amino Acids

36.58

Weight (kDa)

6.67

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	649
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	3 cut(s)	151, 164, 673
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	53, 123, 850
AfaI	GTAC	4 cut(s)	358, 690, 869, 983
AfiI	CCNNNNNNNGG	4 cut(s)	185, 649, 677, 731
AgsI	TTSAA	5 cut(s)	133, 382, 477, 774, 911
AjnI	CCWGG	3 cut(s)	135, 670, 832
AleI	CACNNNNGTG	1 cut(s)	928
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	7 cut(s)	104, 276, 410, 428, 469, 611, 993
AluI	AGCT	7 cut(s)	104, 276, 410, 428, 469, 611, 993
AlwI	GGATC	3 cut(s)	151, 164, 673
AlwNI	CAGNNNCTG	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	874
AoxI	GGCC	2 cut(s)	114, 401
ApeKI	GCWGC	3 cut(s)	425, 575, 955
ApoI	RAATTY	3 cut(s)	53, 123, 850
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	175, 565
AspS9I	GGNCC	1 cut(s)	710
AsuC2I	CCSGG	2 cut(s)	875, 876
AsuHPI	GGTGA	3 cut(s)	746, 761, 954
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	710
BamHI	GGATCC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	437, 562, 942
BccI	CCATC	3 cut(s)	356, 641, 782
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	3 cut(s)	137, 672, 834
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	875, 876
BfaI	CTAG	2 cut(s)	273, 994
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	4 cut(s)	114, 426, 576, 956
BlsI	GCNGC	4 cut(s)	115, 427, 577, 957
BmcAI	AGTACT	2 cut(s)	358, 869
Bme1390I	CCNGG	5 cut(s)	137, 672, 834, 875, 876
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	3 cut(s)	158, 676, 711
BmrFI	CCNGG	5 cut(s)	137, 672, 834, 875, 876
BmsI	GCATC	5 cut(s)	86, 184, 353, 574, 574
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	591, 645
BpuMI	CCSGG	2 cut(s)	875, 876
BsaJI	CCNNGG	3 cut(s)	832, 874, 985
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 649, 677, 731
Bse118I	RCCGGY	1 cut(s)	677
BseBI	CCWGG	3 cut(s)	137, 672, 834
BseDI	CCNNGG	3 cut(s)	832, 874, 985
BseGI	GGATG	3 cut(s)	77, 175, 658
BseLI	CCNNNNNNNGG	4 cut(s)	185, 649, 677, 731
BseMII	CTCAG	5 cut(s)	194, 236, 366, 402, 443
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	437, 562, 942
BshFI	GGCC	2 cut(s)	116, 403
BshNI	GGYRCC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	678, 875
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	4 cut(s)	185, 649, 677, 731
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	116, 403
BsoBI	CYCGRG	1 cut(s)	874
Bsp143I	GATC	4 cut(s)	156, 183, 541, 665
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	116, 403
BspCNI	CTCAG	5 cut(s)	193, 235, 367, 403, 442
BspLI	GGNNCC	3 cut(s)	158, 676, 711
BspPI	GGATC	3 cut(s)	151, 164, 673
BspT107I	GGYRCC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	832, 874, 985
BssMI	GATC	4 cut(s)	156, 183, 541, 665
Bst2UI	CCWGG	3 cut(s)	137, 672, 834
Bst4CI	ACNGT	2 cut(s)	288, 986
BstC8I	GCNNGC	3 cut(s)	37, 243, 278
BstDEI	CTNAG	6 cut(s)	31, 180, 222, 375, 411, 429
BstDSI	CCRYGG	1 cut(s)	985
BstF5I	GGATG	3 cut(s)	77, 175, 658
BstHHI	GCGC	2 cut(s)	175, 565
BstKTI	GATC	4 cut(s)	159, 186, 544, 668
BstMBI	GATC	4 cut(s)	156, 183, 541, 665
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 110, 170, 218, 584
BstNI	CCWGG	3 cut(s)	137, 672, 834
BstNSI	RCATGY	2 cut(s)	39, 504
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSCI	CCNGG	5 cut(s)	135, 670, 832, 873, 874
BstV1I	GCAGC	3 cut(s)	437, 562, 942
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	156, 665
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	156, 665
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	116, 403
BtgI	CCRYGG	1 cut(s)	985
BtsCI	GGATG	3 cut(s)	77, 175, 658
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	37, 243, 278
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	2 cut(s)	175, 565
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	710
Cfr9I	CCCGGG	1 cut(s)	874
CsiI	ACCWGGT	1 cut(s)	135
Csp6I	GTAC	4 cut(s)	357, 689, 868, 982
CviAII	CATG	6 cut(s)	36, 149, 501, 644, 727, 944
CviQI	GTAC	4 cut(s)	357, 689, 868, 982
DdeI	CTNAG	6 cut(s)	31, 180, 222, 375, 411, 429
DpnI	GATC	4 cut(s)	158, 185, 543, 667
DpnII	GATC	4 cut(s)	156, 183, 541, 665
EaeI	YGGCCR	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	874
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	135, 670, 832
EcoRV	GATATC	1 cut(s)	392
FaeI	CATG	6 cut(s)	39, 152, 504, 647, 730, 947
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	6 cut(s)	35, 148, 500, 643, 726, 943
Fnu4HI	GCNGC	4 cut(s)	114, 426, 576, 956
FokI	GGATG	3 cut(s)	64, 162, 665
Fsp4HI	GCNGC	4 cut(s)	114, 426, 576, 956
FspBI	CTAG	2 cut(s)	273, 994
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	2 cut(s)	174, 564
GluI	GCNGC	4 cut(s)	114, 426, 576, 956
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	116, 403
HapII	CCGG	2 cut(s)	678, 875
HhaI	GCGC	2 cut(s)	175, 565
Hin1II	CATG	6 cut(s)	39, 152, 504, 647, 730, 947
Hin6I	GCGC	2 cut(s)	173, 563
HinP1I	GCGC	2 cut(s)	173, 563
HinfI	GANTC	3 cut(s)	511, 737, 920
HpaII	CCGG	2 cut(s)	678, 875
HphI	GGTGA	3 cut(s)	746, 761, 954
Hpy166II	GTNNAC	2 cut(s)	629, 829
Hpy188I	TCNGA	7 cut(s)	183, 188, 292, 376, 583, 742, 917
Hpy188III	TCNNGA	3 cut(s)	95, 348, 431
Hpy8I	GTNNAC	2 cut(s)	629, 829
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	67, 700
HpyCH4III	ACNGT	2 cut(s)	288, 986
HpyCH4IV	ACGT	2 cut(s)	691, 980
HpyCH4V	TGCA	5 cut(s)	257, 280, 344, 425, 504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 110, 170, 218, 584
HpyF3I	CTNAG	6 cut(s)	31, 180, 222, 375, 411, 429
HpySE526I	ACGT	2 cut(s)	691, 980
Hsp92II	CATG	6 cut(s)	39, 152, 504, 647, 730, 947
HspAI	GCGC	2 cut(s)	173, 563
Kzo9I	GATC	4 cut(s)	156, 183, 541, 665
LmnI	GCTCC	3 cut(s)	433, 560, 616
Lsp1109I	GCAGC	3 cut(s)	437, 562, 942
LweI	GCATC	5 cut(s)	86, 184, 353, 574, 574
MabI	ACCWGGT	1 cut(s)	135
MaeI	CTAG	2 cut(s)	273, 994
MaeII	ACGT	2 cut(s)	691, 980
MaeIII	GTNAC	4 cut(s)	106, 490, 921, 960
MalI	GATC	4 cut(s)	158, 185, 543, 667
MboI	GATC	4 cut(s)	156, 183, 541, 665
MboII	GAAGA	7 cut(s)	189, 192, 195, 394, 538, 548, 551
MflI	RGATCY	2 cut(s)	156, 665
MluCI	AATT	7 cut(s)	11, 53, 123, 268, 336, 795, 850
MlyI	GAGTC	2 cut(s)	746, 929
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	2 cut(s)	928, 942
MspI	CCGG	2 cut(s)	678, 875
MspR9I	CCNGG	5 cut(s)	137, 672, 834, 875, 876
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	3 cut(s)	137, 672, 834
MwoI	GCNNNNNNNGC	5 cut(s)	45, 110, 170, 218, 584
NciI	CCSGG	2 cut(s)	875, 876
NdeII	GATC	4 cut(s)	156, 183, 541, 665
NlaIII	CATG	6 cut(s)	39, 152, 504, 647, 730, 947
NlaIV	GGNNCC	3 cut(s)	158, 676, 711
NmuCI	GTSAC	3 cut(s)	106, 921, 960
NsbI	TGCGCA	1 cut(s)	174
NspI	RCATGY	2 cut(s)	39, 504
OliI	CACNNNNGTG	1 cut(s)	928
PaeI	GCATGC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	1 cut(s)	649
PkrI	GCNGC	4 cut(s)	115, 427, 577, 957
PleI	GAGTC	2 cut(s)	745, 928
PpsI	GAGTC	2 cut(s)	745, 928
PpuMI	RGGWCCY	1 cut(s)	710
PshAI	GACNNNNGTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	135, 670, 832
PspGI	CCWGG	3 cut(s)	135, 670, 832
PspN4I	GGNNCC	3 cut(s)	158, 676, 711
PspPI	GGNCC	1 cut(s)	710
PspPPI	RGGWCCY	1 cut(s)	710
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	156, 665
RsaI	GTAC	4 cut(s)	358, 690, 869, 983
RsaNI	GTAC	4 cut(s)	357, 689, 868, 982
RseI	CAYNNNNRTG	2 cut(s)	928, 942
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	4 cut(s)	114, 426, 576, 956
Sau3AI	GATC	4 cut(s)	156, 183, 541, 665
Sau96I	GGNCC	1 cut(s)	710
ScaI	AGTACT	2 cut(s)	358, 869
SchI	GAGTC	2 cut(s)	746, 929
ScrFI	CCNGG	5 cut(s)	137, 672, 834, 875, 876
SexAI	ACCWGGT	1 cut(s)	135
SfaNI	GCATC	5 cut(s)	86, 184, 353, 574, 574
SinI	GGWCC	1 cut(s)	710
SmaI	CCCGGG	1 cut(s)	876
SmiMI	CAYNNNNRTG	2 cut(s)	928, 942
SmlI	CTYRAG	2 cut(s)	606, 660
SmoI	CTYRAG	2 cut(s)	606, 660
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	7 cut(s)	11, 53, 123, 268, 336, 795, 850
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	273, 994
StyD4I	CCNGG	5 cut(s)	135, 670, 832, 873, 874
TaaI	ACNGT	2 cut(s)	288, 986
TaiI	ACGT	2 cut(s)	694, 983
TaqI	TCGA	3 cut(s)	96, 619, 793
TasI	AATT	7 cut(s)	11, 53, 123, 268, 336, 795, 850
TatI	WGTACW	2 cut(s)	356, 867
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	3 cut(s)	106, 921, 960
TseI	GCWGC	3 cut(s)	425, 575, 955
Tsp45I	GTSAC	3 cut(s)	106, 921, 960
TspDTI	ATGAA	3 cut(s)	455, 579, 932
TspGWI	ACGGA	3 cut(s)	446, 464, 794
TspMI	CCCGGG	1 cut(s)	874
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	3 cut(s)	53, 123, 850
XceI	RCATGY	2 cut(s)	39, 504
XmaI	CCCGGG	1 cut(s)	874
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	273, 994
ZrmI	AGTACT	2 cut(s)	358, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.