Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010148

Physical Location & Seq

Genomic Coordinates Forward (+)

7941754 .. 7948316

Gene Structure 6563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGGATTCAAGTTCGAGGAGGAGGAGTTCAGAGCTTGCTGCGGAAGCACCCAATTCGCGAAAGAGATGGCGAAGGCCTCGCCTTTCTCGTCTCTTGAAGAAGCCGTAACTGTTGCCAGAGACGTTTGGTTCAACAAGGTCGACGTCACCGGTTGGCTTCAGGCTTTCTCCGCTCATCCTCAGATCGGCCACTCTCCTCCTTCTTCTTCTCACCCCACCTCTGCTCAATGGAGCAAAGGAGAGCAGTCAACTGCTATTGCAACTGCTACTAGTTCTAGCTTACAGGAACTCTCTCAATGGAATGCTAGATACAGGGAAAAGTTTGGGTTTGTATTTCTAATATGTGCATCGGGGAAGAGCACTGATGGGATACTTGCTGAATTGAAGAAACGATATCCAAATAGGCCTATTGTTGAGTTTGAAATTGCAGCAAAGGAGCAGATGAAAATAACAGAACTACGTCTTGCGAAACTTTTCTCAACTAAAGAAAAGGTTCCTTCCACAGGCAACGTGAATCCCTCAGTTGCTGCAAAGAAAGTGGAAGAAGATCGTGTAAGCATTATTGGAGGTCATCTAAGTGCTTCTTCTGACATTTCAGCTGTTAAAACCGAGACTCCAACTCGAACCCGTCCACCCATCACAACTCATGTCTTGGATATTTCTCGAGGATCTCCGGGTGCAGGCATTGAGGTATGTTTAGAAATGTGGAAGGGTCATCAACCTCATCCTGTATTTGGCGAGTCAACTACAGGCGGTTGGGTATTTCAAGGGTCTTCAACTACGAATAGTGATGGGCGAAGTGGTCAGTTGTTGAGCATATTTGATGCGGTGAACCCAGGGATATACAGGATAAGTTTTAACACTGGCAAGTACTGCCCAGGCGGGTTCTTTCCTTATGTATCCATAGTGTTTGAAATCAGGGAGTCACAGAAGTTGGAACATTTTCATGTTCCTTTACTGCTGTCACCATTCTCATTCTCAACTTACCGTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0001558 GO:0001560 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009605 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009898 GO:0009987 GO:0009991 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016787 GO:0016810 GO:0016812 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0018130 GO:0019428 GO:0019897 GO:0019898 GO:0022607 GO:0023052 GO:0031234 GO:0031668 GO:0032870 GO:0033971 GO:0033993 GO:0034641 GO:0040008 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046483 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0051997 GO:0055086 GO:0065003 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0098552 GO:0098562 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

OHCU_decarbox Transthyretin

Protein Analysis

334

Amino Acids

36.56

Weight (kDa)

7.69

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OHCU_decarbox	PF09349	9 - 157	3.2e-34	OHCU decarboxylase
Transthyretin	PF00576	214 - 332	3.8e-30	HIUase/Transthyretin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58220 AT5G58220 AT5G58220
fragaria_vesca	FvH4_7g08020 FvH4_7g08020 FvH4_7g08020
malus_domestica	MD00G1098400.v1.1
prunus_persica	Prupe.2G109200_v2.0.a1
pyrus_communis	pycom07g06690
rosa_chinensis	RchiOBHm_Chr1g0341291
rosa_laevigata	RLG00000029080
rosa_multiflora	Rmu_sc0004092.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311920
rosa_rugosa	Rorug01G0157900.1 Rorug01G0158000.1 Rorug01G0158100.1
rosa_samantha	Rh1AG172500 Rh1BG140600 Rh1CG160600 Rh1DG172800
rosa_wichuraiana	Rw1G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	45, 174, 756, 830, 885
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	4 cut(s)	188, 506, 683, 737
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	8 cut(s)	13, 101, 136, 388, 425, 770, 780, 917
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	838, 880
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	4 cut(s)	38, 282, 602, 999
AluI	AGCT	4 cut(s)	38, 282, 602, 999
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	99, 117, 608
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	3 cut(s)	78, 190, 407
ApeKI	GCWGC	3 cut(s)	42, 431, 530
AsiGI	ACCGGT	1 cut(s)	152
Asp700I	GAANNNNTTC	3 cut(s)	476, 495, 945
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	142, 206, 844, 960
AvaI	CYCGRG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	29, 443, 517
BccI	CCATC	4 cut(s)	64, 362, 647, 788
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	2 cut(s)	840, 882
BciVI	GTATCC	2 cut(s)	366, 913
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	3 cut(s)	99, 117, 608
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	4 cut(s)	273, 279, 309, 1000
BfmI	CTRYAG	1 cut(s)	750
BfuI	GTATCC	2 cut(s)	366, 913
BisI	GCNGC	3 cut(s)	43, 432, 531
BlsI	GCNGC	3 cut(s)	44, 433, 532
BmcAI	AGTACT	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	678, 840, 882
BmeT110I	CYCGRG	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	3 cut(s)	678, 840, 882
BmsI	GCATC	2 cut(s)	359, 817
BpiI	GAAGAC	1 cut(s)	768
BpuMI	CCSGG	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	838, 839, 880, 991
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 601, 631
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 506, 683, 737
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	871
BseBI	CCWGG	2 cut(s)	840, 882
BseDI	CCNNGG	4 cut(s)	838, 839, 880, 991
BseGI	GGATG	2 cut(s)	178, 727
BseLI	CCNNNNNNNGG	4 cut(s)	188, 506, 683, 737
BseMII	CTCAG	2 cut(s)	197, 537
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	4 cut(s)	35, 38, 41, 189
BseXI	GCAGC	3 cut(s)	29, 443, 517
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	80, 192, 409
BshTI	ACCGGT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	153, 677
BslI	CCNNNNNNNGG	4 cut(s)	188, 506, 683, 737
BsmAI	GTCTC	3 cut(s)	99, 117, 608
BsmBI	CGTCTC	2 cut(s)	99, 117
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	80, 192, 409
BsoBI	CYCGRG	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	186, 550, 671
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	5 cut(s)	45, 174, 756, 830, 885
BspANI	GGCC	3 cut(s)	80, 192, 409
BspCNI	CTCAG	2 cut(s)	196, 536
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	871
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	838, 839, 880, 991
BssMI	GATC	3 cut(s)	186, 550, 671
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	840, 882
Bst4CI	ACNGT	2 cut(s)	115, 992
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	40, 685
BstDEI	CTNAG	3 cut(s)	183, 523, 578
BstDSI	CCRYGG	1 cut(s)	991
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	178, 727
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	189, 553, 674
BstMAI	GTCTC	3 cut(s)	99, 117, 608
BstMBI	GATC	3 cut(s)	186, 550, 671
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 173, 876
BstNI	CCWGG	2 cut(s)	840, 882
BstSCI	CCNGG	3 cut(s)	676, 838, 880
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	29, 443, 517
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	2 cut(s)	366, 913
BsuRI	GGCC	3 cut(s)	80, 192, 409
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	178, 727
BtsIMutI	CAGTG	2 cut(s)	363, 864
BtuMI	TCGCGA	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	40, 685
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	874
CspAI	ACCGGT	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	2 cut(s)	650, 950
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	3 cut(s)	183, 523, 578
DpnI	GATC	3 cut(s)	188, 552, 673
DpnII	GATC	3 cut(s)	186, 550, 671
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco147I	AGGCCT	2 cut(s)	80, 409
Eco32I	GATATC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	666
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	838, 880
EcoRV	GATATC	1 cut(s)	398
Esp3I	CGTCTC	2 cut(s)	99, 117
FaeI	CATG	2 cut(s)	653, 953
FaiI	YATR	8 cut(s)	346, 651, 697, 821, 847, 900, 908, 951
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FatI	CATG	2 cut(s)	649, 949
FauI	CCCGC	1 cut(s)	878
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	43, 432, 531
FokI	GGATG	2 cut(s)	165, 714
Fsp4HI	GCNGC	3 cut(s)	43, 432, 531
FspBI	CTAG	4 cut(s)	273, 279, 309, 1000
GluI	GCNGC	3 cut(s)	43, 432, 531
HaeIII	GGCC	3 cut(s)	80, 192, 409
HapII	CCGG	2 cut(s)	153, 677
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	653, 953
HincII	GTYRAC	3 cut(s)	145, 252, 747
HindII	GTYRAC	3 cut(s)	145, 252, 747
HinfI	GANTC	5 cut(s)	9, 517, 616, 743, 926
HpaII	CCGG	2 cut(s)	153, 677
HphI	GGTGA	4 cut(s)	142, 206, 844, 960
Hpy166II	GTNNAC	5 cut(s)	145, 252, 635, 747, 835
Hpy188I	TCNGA	3 cut(s)	35, 186, 592
Hpy188III	TCNNGA	3 cut(s)	61, 98, 666
Hpy8I	GTNNAC	5 cut(s)	145, 252, 635, 747, 835
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	70, 213, 510, 706
HpyCH4III	ACNGT	2 cut(s)	115, 992
HpyCH4IV	ACGT	4 cut(s)	126, 147, 463, 513
HpyCH4V	TGCA	5 cut(s)	263, 350, 431, 533, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 173, 876
HpyF3I	CTNAG	3 cut(s)	183, 523, 578
HpySE526I	ACGT	4 cut(s)	126, 147, 463, 513
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	653, 953
Kzo9I	GATC	3 cut(s)	186, 550, 671
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	234, 439
Lsp1109I	GCAGC	3 cut(s)	29, 443, 517
LweI	GCATC	2 cut(s)	359, 817
MaeI	CTAG	4 cut(s)	273, 279, 309, 1000
MaeII	ACGT	4 cut(s)	126, 147, 463, 513
MaeIII	GTNAC	4 cut(s)	109, 148, 927, 966
MalI	GATC	3 cut(s)	188, 552, 673
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	186, 550, 671
MboII	GAAGA	9 cut(s)	113, 198, 201, 370, 400, 557, 560, 579, 768
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	3 cut(s)	56, 383, 426
MlyI	GAGTC	3 cut(s)	610, 752, 935
MmeI	TCCRAC	2 cut(s)	644, 918
MroXI	GAANNNNTTC	3 cut(s)	476, 495, 945
MseI	TTAA	2 cut(s)	606, 861
MslI	CAYNNNNRTG	2 cut(s)	579, 948
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	153, 677
MspR9I	CCNGG	3 cut(s)	678, 840, 882
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	2 cut(s)	840, 882
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	48, 173, 876
NciI	CCSGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	186, 550, 671
NlaIII	CATG	2 cut(s)	653, 953
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	3 cut(s)	148, 927, 966
NruI	TCGCGA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	666
PasI	CCCWGGG	1 cut(s)	839
PceI	AGGCCT	2 cut(s)	80, 409
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	3 cut(s)	476, 495, 945
PfeI	GAWTC	2 cut(s)	9, 517
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	44, 433, 532
PleI	GAGTC	3 cut(s)	610, 751, 934
PpsI	GAGTC	3 cut(s)	610, 751, 934
Psp6I	CCWGG	2 cut(s)	838, 880
PspGI	CCWGG	2 cut(s)	838, 880
PspN4I	GGNNCC	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	602
RruI	TCGCGA	1 cut(s)	62
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	2 cut(s)	579, 948
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	606, 861
SatI	GCNGC	3 cut(s)	43, 432, 531
Sau3AI	GATC	3 cut(s)	186, 550, 671
ScaI	AGTACT	1 cut(s)	875
SchI	GAGTC	3 cut(s)	610, 752, 935
ScrFI	CCNGG	3 cut(s)	678, 840, 882
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	2 cut(s)	359, 817
SfcI	CTRYAG	1 cut(s)	750
Sfr274I	CTCGAG	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	579, 948
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	3 cut(s)	56, 383, 426
SseBI	AGGCCT	2 cut(s)	80, 409
SsiI	CCGC	5 cut(s)	45, 174, 756, 830, 885
SspMI	CTAG	4 cut(s)	273, 279, 309, 1000
StuI	AGGCCT	2 cut(s)	80, 409
StyD4I	CCNGG	3 cut(s)	676, 838, 880
TaaI	ACNGT	2 cut(s)	115, 992
TaiI	ACGT	4 cut(s)	129, 150, 466, 516
TaqI	TCGA	4 cut(s)	18, 144, 625, 667
TasI	AATT	3 cut(s)	56, 383, 426
TatI	WGTACW	1 cut(s)	873
TfiI	GAWTC	2 cut(s)	9, 517
Tru1I	TTAA	2 cut(s)	606, 861
Tru9I	TTAA	2 cut(s)	606, 861
TscAI	CASTG	2 cut(s)	370, 871
TseFI	GTSAC	3 cut(s)	148, 927, 966
TseI	GCWGC	3 cut(s)	42, 431, 530
Tsp45I	GTSAC	3 cut(s)	148, 927, 966
TspDTI	ATGAA	2 cut(s)	461, 938
TspRI	CASTG	2 cut(s)	370, 871
XagI	CCTNNNNNAGG	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	3 cut(s)	476, 495, 945
XspI	CTAG	4 cut(s)	273, 279, 309, 1000
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.