AT5G58410

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011193
Physical Location & Seq
Forward (+)
23609376 .. 23617599
8224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58410.1

Sequence Viewer

Length: 5622 bp
ATGGGCAAACCCAAAGGAGATGCTGCAAGAAGCAAAGCACGTCCATCTAGCAGCAGCTTGGCAGCTTCTCTGTTGCCGTCTGGCTCTGCAGCCGCCGTAGGTTTTGGGGGCTATGTCGGTAGCTCTAGATTCCAAACTTCTCTGTCAAACGAAGACTCTGCTTCCTTCTTGGATTTGGATAGTGAGGTTGCCCAACACTTGCAAAGGCTTTCAAGGAAGGATCCTACAACAAAGATTAAAGCTCTTGCTTCCCTATCAGAACTGGTTAAGCAGAAGCAAGGGAAGGAACTTTTGCCAATAATCCCACAATGGACATTTGAGTACAAGAAGCTGATACTGGACTACAGTCGAGATGTTCGGCGAGCTACTCATGACGTCATGACTAATGTTGTCACTGGTGCCGGGAGAGATATAGCTCCTCATCTAAAGTCTATAATGGGGCCCTGGTGGTTTTCGCAATTTGATTTGGCATCTGAAGTTTCTCAAGCAGCAAAGTCGTCTTTCCAGGTTGGCTCCTCGTTTGGTAATTCAGTTTTCTTGGTGGAGGCAGCATTCCCTGCCCAGGAAAAGAGATTGCACGCCTTGAATTTATGTTCAGCTGAGATTTTTGCTTATCTGGAGGAAAATCTCAAACTTACACCTCAAAATTTATCTGATAAATCACTTGCTTCAGATGAATTAGAAGAAATGTACCAGCAGATGATATCGTCATCTCTGGTGGGGTTGGCTACACTTCTAGATATTTTGCTCCGCGAACCCGATAATACTGGCTCTGCAAACATTAATTCTGAATCAAAACTTGCCTCAAAGGCTAGGGCAGTAGCAACCTCCTCAGCTGAGAAGATGTTCTCTTCCCATAAATGCTTTCTGAACTTTCTAAAATCTGAAAGCCCTAGTATTCGGTCAGCGACTTATTCTTTGTTAAGCAGCTTCATTAAAAATGTTCCTGAAGTCTTTGGCGAAGGCGACGTCCGAAGTCTTGCACCAGCTCTGCTTGGTGTTTTTCGAGAAAATAATCCAACCTGCCACTCATCAATGTGGGAGGCTGTCTTGCTGTTCTCTAAAAAATTTCCTCAGAGTTGGGTCTACTTAAATGTTCATAAATCTGTTCTAAATCATTTATGGCAGTTTCTGAGGAACGGGTGCTATGGATCCCCACAGGTTTCTTATCCTGCACTGATATTGTTCCTCGAAGTTATGCCAGCACAATCTGTAGAAAGTGATAAGTTCTTTGTGAATTTTTTCAAAAACTTATTGGCTGGAAGGAGTATGTGTGAATCATCAAGTACGGATCAGTTATCACTTCTTCGGGCAACCACTGAATGTTTCCTCTGGGGATTACGTAATGCTTCAAGGTATTGCGATGTTCCCAATTCTATTCATGATCTCCAGGTTGATCTAATTGATAAAGTCCTAGTGAAGATTCTATGGGCGGACTTCACTGAACTATCTAAGGGCAGCATTCCACCTAATCAGAGGAAGTCAGCTGAAAATCTTGGCATGGGTAATTCAGTTAGTTATCTGCAAGAGCTAGGAAGATGCATCTTAGAAATTCTATCAGGGATTAATTTACTTGAACAGAACCTGCTGTCTTTTTTCTGTAAAGCTGTTCAAGAGAGCTTCTTGAATATGCTTCAGCAGGGAGATTTAGAGATAGTTGCGGGAAGCATGAGAAAAATGATTGATTTTCTCTTGTTATTGGAGAGATATTCAGTTTTGGAAGGTGAGAGCTGGCCCTTGCATCAATTTATGGGGCCACTGCTGTCCAAGGCTTTCCCGTGGATAAGATCATCTGAATTGTTAGATGGTGTGAAGCTTTTGTCAGTTTCAGTATCGGTGTTTGGACCAAGAAAGGTAGTTCCAGTGCTAATTGATGATATAGAGACTTCTACCCTTCTCTCTGTTGAAAAAGAGAAGAATATGAGCCCGGAGAAGCTTATTAAAGTTTTTCAAGAAATTTTTATTCCTTGGTGTATGGATGGATATGACTCTTCGACTGCAGCTAGACAAGATCTCCTATTTTCATTGCTTGATGATGAATGTTTCACTCAGCAGTGGAGTGATGTCATTTCTTATGTATTTAATCAACAACATCAGGGCTTCAATAACCTGGCTGCTATGAAAATGCTTTTAGAGAAGGCAAGGGATGAAATTACAAAAAGAAGTTCTGGACAGGAGTTGAATCAAAGAATAGGTTCTCGGCCAGAACATTGGCACCATACACTCATAGAATCAACTGCTATAAGTCTTGTCCATTCCTCCTCAGCGACTACAACTTCTGCTGTTCAGTTCCTGTGTTCAGTTCTGGGTGGTTCAACCCAAGACAGCAGTATTTCTTTTGTGTCAAGAAGCTCGTTGGTCTTGATATATAGAGGGATCCTCGAAAAACTGCTATCTTTTATCAAACAGTCACCATTATGTTCAGTCAATGATACATGTTCGTCTCTTATTGTCGAGGCTATAGCGTTTGATTCGAGCAGTTCTGTAGATGTGATCGTGGTTGCTAAGTTTGCAGCTGAAGTTATTGATGGTAGTTTCTTCAGTTTGAAGTCTCTGAGTCAGGACGCAACCCTACTTACAACTGTATTGTCTTCTATTTTTATCATTGACTTAGAGAATAGAATGACATCACTAGTGGACAATACGCTATCTGAGTCCAAAGAGAAGAGAAAGGATCGGAATTTTGTGTGTGATTATGTTCATGCCGTTTGCTCTAAGATGGATAATCAATTCTGGAAATCTATAAACTATGATGTCCGGAAGAGTTCAGCAAGCACTTTGGCTCAGTTCCTGAGGTCAGTTGTCCTACTTGAGGATGATCTGCAACCTTTTGAACTTACATTATTGTGTGCTTCAAGGATGACCGAAGTGTTAGAATATCTCTCATTGGATCAAAGCGATGAAGAGAATATCTGTGGCCTGCTCCTGCTTGAGAGTGATGCGTGGCCTATTTGGGTCAGCCCCAGCTCGTCAGCTAGCATAGATACCCATGGTATGCCTGTTCAGTTGTGCGAATTGAGGAAATCGAAAAGTCAAAGATATGTTTCTTTCATTGACAGCCTGATCATGAAATTGGGAATTCACCGATTTATTGTTGGCCACAAAGATCATGGGTTTGCCTCTCAAGCTTGGCTTTCCGTAGAAATACTCTGCACGTGGGAGTGGCCAGGGGGTAAAGTTCAGACTTCTTTCCTGCCAAATCTTGTATCATTTTGTAAGGATGAACCATCGAGTGGAGGTTTACTAAATTCCATTTTTGACATTCTACTCAACGGTGCTCTTGTGCATGTAAAGGATGAGGAAGAGGGCTTAGGGAACATGTGGGTTGACTTTAATAATAACATAGTGGACGTCGTTGAACCATTTTTGAGGGCTCTAGTGTCATTCCTTCACATTTTGTTCAAGGAGGACCTTTGGGGAGAAGAAGAAGCCATGGCTGCTTTCAAAATGATCACAGATAAACTCTTCATAGGGGAAGAGACAAGCAAAAACTGTTTGAGAATTATTCCTTACATTATGAGCATAATAATCTCACCATTACGTACAAAAGTAAAATCTGGTGGTTCTGGTAAAGATACTCTGCTACCACTGGAAGTTTTGCTTAGAAATTGGCTGGAGAGGTCTTTGTCGTTTCCTCCTCTGGTGCTCTGGCAAAGTGGGGAAGATATACAGGATTGGTTTCAGCTTGTTATCTCTTGTTATCCCGTAAGTGATAAAGCTGAAGAAGCAAAGGAACTACAGAGGCATCTGAGCACTGAAGAGAGAACGCTCCTGCTTGACTTGTTCCGCAAACAAAAGCAAGATCCTGGTGCATCAACTGTAGTTACCCAACTTCCAGCTGTGCAAATTCTGCTCGCAAGACTAATTATGATTGCAGTTAGTTACTGTGGAAACGATTTTAACGAGGATGATTGGGATTTTGTCTTTTCTAATCTGAAGCGTCTGATTCAATCTGCAGTAGTTGTGATGGAGGAAACTTCCGAGAACGTCAACGACTTCATTAGTGGTGTTTCTTCCATGGAGAAGGAGAAGGAGAATGATACCCTTGAAGGACTTGGGCATATAGTTTTTATCTCTGATCCTTCTATAAACAGTGCTCAGAATGCTCTCTCAGCATTTTCGTTGCTTAATGCGTTAGTAAACCATAAATCTGTTGAAGGTGAAGACAATCTGAAATCCTTGGCAGATGAAACATGGGATCCTGTTAAAGATCGAATACTTGAAGGTGTTCTGCGTCTTTTCTTCTGCACGGGTCTTACTGAGGCTATTGCTGCTTCATATTCCCCAGAGGCAGCATCTATTGTTGCTTCATTTCGAGTTGATCATCTGCAGTTCTGGGAGCTGGTAGCTCACCTTGTAGTAGACTCTTCTCCACGCGCAAGAGATAGAGCTGTCAGAGCAGTGGAATTCTGGGGACTAAGCAGAGGATCTATAAGCTCTTTGTATGCAATAATGTTCTCTTCCAATCCAATCCCGTCATTGCAACTTGCTGCATACACTGTTTTGTCTACCGAACCTATTTCCAGGCTGGCCATAGTTGCTGATTTGAATGCACCACTGAATGATGAGTCTCTCAATGATCAGGACTCAAGCAATGCTGGTTTACCATCTGAAGACAAGCTACTGCTAAGAGATGAAGTATCTTGTATGGTTGAGAAGTTAGATCATGAACTTCTTGATACGGACTTGACTGCGCCAGAAAGGGTGCAAACGTTCCTGGCGTGGTCTTTGTTACTCTCCAATGTTAACTCTTTACCTTCACTAACCCAAGGACGAGAGAGACTGGTGCAATATATAGAAAAAACTGCAAATCCGTTGATATTAGATAGTCTTTTTCAGCACATTCCTCTAGAATTATACATGGGACAGAGCTTGAAGAAAAAAGATGGGGATATTCCGTCTGAGTTATCTGTGGTAGCTTCAGCAGCCACTCGTGCGATTATTACGGGTTCGTCCCTGTCAACGGTTGAATCACTTTGGCCTATTGAAACTGGAAAGATGGCTTCGCTTGCTGGGGCGATATATGGTCTGATGTTACGTGTCCTTCCAGCTTATGTTAGAGAATGGTTTAGCGAAATGCGTGACCGTTCTGCATCATCTCTTATTGAAGCATTTACAAGAACGTGGTGCAGCCCATCTCTAATCAAGAACGAACTGTCTCAGATAAAGAAGGCAGACTTTAATGATGAGAGCTTTTCAGTCAGCATAAGTAAAGCGGCAAATGAGGTAGTTGCTACATATACGAAGGATGAAACGGGGATGGATCTCGTGATCCGGCTTCCAGTTTCTTACCCACTCAAGCCTGTTGACGTTAATTGCGCAAAAAGTATTGGAATAAGCGAAGCGAAGCAGAGGAAGTGGTTGATGTCTATGCAAATGTTTGTTCGTCATCAGAATGGGGCTCTGGCGGAGGCGATAAGGATATGGAAGCGAAATTCGGACAAGGAATTTGAAGGAGTAGAAGACTGCCCGATATGTTACAGTGTGATACACATAGGGAATCACAGCCTTCCAAGGCGAGCTTGCGTGACTTGCAAGTACAAGTTTCACAAAGCATGTTTAGACAAGTGGTTCTACACGTCTAATAAGAAACTCTGCCCCTTGTGCCAATCTCCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

1873

Amino Acids

208.74

Weight (kDa)

5.32

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ltn1_1st PF22958 59 - 398 1.4e-83 E3 ubiquitin-protein ligase listerin, N-terminal domain
LTN1_E3_ligase_6th PF22999 1477 - 1723 9.4e-32 LTN1 family HEAT repeat region
UBC_like PF23009 1733 - 1816 1.4e-29 Ubiquitin conjugating domain-like
zf-RING_2 PF13639 1822 - 1870 1.2e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58410 AT5G58410
fragaria_vesca FvH4_3g39950 FvH4_3g39950 FvH4_3g39950
malus_domestica MD03G1058100.v1.1
prunus_persica Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1
pyrus_communis pycom03g04640
rosa_chinensis RchiOBHm_Chr5g0071961
rosa_laevigata RLG00000036266
rosa_multiflora Rmu_sc0012806.1_g000004
rosa_roxburghii Rroxscaffold_1G00009240
rosa_rugosa Rorug05G0415700
rosa_samantha Rh5AG471700 Rh5BG491700 Rh5CG515500 Rh5DG503100
rosa_wichuraiana Rw5G043850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 378, 972, 3354
Acc16I TGCGCA 1 cut(s) 5320
Acc36I ACCTGC 2 cut(s) 1031, 1593
AccB1I GGYRCC 2 cut(s) 398, 2214
AccB7I CCANNNNNTGG 1 cut(s) 3233
AccI GTMKAC 3 cut(s) 1086, 4362, 4508
AccII CGCG 2 cut(s) 753, 4377
AccIII TCCGGA 1 cut(s) 2757
AciI CCGC 7 cut(s) 93, 751, 1433, 1661, 3787, 5216, 5408
AclI AACGTT 1 cut(s) 4712
AcoI YGGCCR 4 cut(s) 2201, 3097, 3164, 4530
AcvI CACGTG 1 cut(s) 3156
AcyI GRCGYC 3 cut(s) 375, 969, 3351
AfaI GTAC 5 cut(s) 323, 692, 1288, 3544, 5540
AfiI CCNNNNNNNGG 4 cut(s) 562, 2812, 3233, 4963
AflIII ACRYGT 4 cut(s) 2435, 3318, 5038, 5577
AhlI ACTAGT 1 cut(s) 2632
AjiI CACGTC 2 cut(s) 41, 5580
AjnI CCWGG 9 cut(s) 443, 504, 561, 1389, 2109, 3166, 3805, 4523, 4716
Alw21I GWGCWC 4 cut(s) 3280, 3648, 3755, 4099
Alw26I GTCTC 7 cut(s) 1877, 2448, 2556, 3473, 4575, 4774, 5163
AlwNI CAGNNNCTG 4 cut(s) 1132, 1585, 2293, 2791
Aor13HI TCCGGA 1 cut(s) 2757
ApaI GGGCCC 1 cut(s) 444
ArsI GACNNNNNNTTYG 6 cut(s) 901, 933, 954, 986, 5432, 5464
AseI ATTAAT 2 cut(s) 783, 1566
Asp700I GAANNNNTTC 4 cut(s) 845, 1241, 2194, 4227
AspLEI GCGC 3 cut(s) 4379, 4696, 5321
AspS9I GGNCC 6 cut(s) 440, 441, 1734, 1754, 1844, 3409
AsuC2I CCSGG 2 cut(s) 403, 1928
AsuHPI GGTGA 6 cut(s) 1736, 2403, 3074, 3525, 4172, 4343
AsuNHI GCTAGC 1 cut(s) 2975
AvaII GGWCC 2 cut(s) 1844, 3409
AxyI CCTNAGG 1 cut(s) 2792
BaeGI GKGCMC 1 cut(s) 444
BalI TGGCCA 3 cut(s) 3099, 3166, 4532
BamHI GGATCC 4 cut(s) 220, 1151, 2376, 4198
BanI GGYRCC 2 cut(s) 398, 2214
BanII GRGCYC 4 cut(s) 444, 1928, 3376, 5404
BarI GAAGNNNNNNTAC 2 cut(s) 4605, 4637
BauI CACGAG 2 cut(s) 4932, 5267
BbrPI CACGTG 1 cut(s) 3156
BbsI GAAGAC 5 cut(s) 159, 2583, 4170, 4620, 5469
Bbv12I GWGCWC 4 cut(s) 3280, 3648, 3755, 4099
BbvCI CCTCAGC 2 cut(s) 832, 2263
BceAI ACGGC 3 cut(s) 61, 80, 2690
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 477, 511
BciT130I CCWGG 9 cut(s) 445, 506, 563, 1391, 2111, 3168, 3807, 4525, 4718
BclI TGATCA 4 cut(s) 3063, 3450, 4321, 4579
BcnI CCSGG 2 cut(s) 403, 1928
BcoDI GTCTC 7 cut(s) 1877, 2448, 2556, 3473, 4575, 4774, 5163
BcuI ACTAGT 1 cut(s) 2632
BfuAI ACCTGC 2 cut(s) 1031, 1593
BglI GCCNNNNNGGC 1 cut(s) 809
BglII AGATCT 1 cut(s) 2011
Bme18I GGWCC 2 cut(s) 1844, 3409
BmgBI CACGTC 2 cut(s) 41, 5580
BmgT120I GGNCC 6 cut(s) 440, 441, 1734, 1754, 1844, 3409
BmtI GCTAGC 1 cut(s) 2979
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 5 cut(s) 159, 2583, 4170, 4620, 5469
BplI GAGNNNNNCTC 2 cut(s) 2364, 2396
BpmI CTGGAG 3 cut(s) 638, 1373, 3635
Bpu10I CCTNAGC 3 cut(s) 832, 2263, 3310
BpuEI CTTGAG 6 cut(s) 468, 2831, 2951, 3108, 4573, 5282
BpuMI CCSGG 2 cut(s) 403, 1928
BsaAI YACGTR 4 cut(s) 1343, 3156, 3542, 5039
BsaHI GRCGYC 3 cut(s) 375, 969, 3351
BsaWI WCCGGW 1 cut(s) 2757
BsaXI ACNNNNNCTCC 4 cut(s) 1258, 1288, 1998, 2028
Bsc4I CCNNNNNNNGG 4 cut(s) 562, 2812, 3233, 4963
Bse1I ACTGG 9 cut(s) 267, 342, 400, 772, 1862, 3594, 4788, 4996, 5282
Bse21I CCTNAGG 1 cut(s) 2792
Bse3DI GCAATG 3 cut(s) 2024, 4478, 4600
BseAI TCCGGA 1 cut(s) 2757
BseBI CCWGG 9 cut(s) 445, 506, 563, 1391, 2111, 3168, 3807, 4525, 4718
BseGI GGATG 9 cut(s) 1984, 2152, 2821, 2865, 3226, 3301, 3913, 5254, 5265
BseLI CCNNNNNNNGG 4 cut(s) 562, 2812, 3233, 4963
BseMI GCAATG 3 cut(s) 2024, 4478, 4600
BseNI ACTGG 9 cut(s) 267, 342, 400, 772, 1862, 3594, 4788, 4996, 5282
BseRI GAGGAG 5 cut(s) 408, 505, 820, 2251, 3627
BseSI GKGCMC 1 cut(s) 444
BseYI CCCAGC 2 cut(s) 2963, 5012
BsgI GTGCAG 4 cut(s) 1158, 3136, 4231, 5149
Bsh1236I CGCG 2 cut(s) 753, 4377
BshNI GGYRCC 2 cut(s) 398, 2214
BsiHKAI GWGCWC 4 cut(s) 3280, 3648, 3755, 4099
BsiSI CCGG 4 cut(s) 402, 1928, 2758, 5275
BslFI GGGAC 3 cut(s) 4428, 4878, 4939
BslI CCNNNNNNNGG 4 cut(s) 562, 2812, 3233, 4963
BsmAI GTCTC 7 cut(s) 1877, 2448, 2556, 3473, 4575, 4774, 5163
BsmBI CGTCTC 1 cut(s) 2448
BsmFI GGGAC 3 cut(s) 4428, 4878, 4939
BsmI GAATGC 4 cut(s) 551, 1461, 4108, 4555
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 8 cut(s) 444, 1928, 3280, 3376, 3648, 3755, 4099, 5404
Bsp13I TCCGGA 1 cut(s) 2757
Bsp19I CCATGG 3 cut(s) 2989, 3432, 4017
BspACI CCGC 7 cut(s) 93, 751, 1433, 1661, 3787, 5216, 5408
BspEI TCCGGA 1 cut(s) 2757
BspFNI CGCG 2 cut(s) 753, 4377
BspHI TCATGA 5 cut(s) 370, 378, 1381, 3066, 4666
BspMAI CTGCAG 4 cut(s) 91, 2002, 3958, 4332
BspMI ACCTGC 2 cut(s) 1031, 1593
BspOI GCTAGC 1 cut(s) 2979
BspT107I GGYRCC 2 cut(s) 398, 2214
BsrDI GCAATG 3 cut(s) 2024, 4478, 4600
BsrI ACTGG 9 cut(s) 267, 342, 400, 772, 1862, 3594, 4788, 4996, 5282
BssNI GRCGYC 3 cut(s) 375, 969, 3351
BssSI CACGAG 2 cut(s) 4932, 5267
BssT1I CCWWGG 8 cut(s) 1767, 1967, 2989, 3432, 4017, 4179, 4768, 5513
Bst2BI CACGAG 2 cut(s) 4932, 5267
Bst2UI CCWGG 9 cut(s) 445, 506, 563, 1391, 2111, 3168, 3807, 4525, 4718
BstACI GRCGYC 3 cut(s) 375, 969, 3351
BstAPI GCANNNNNTGC 2 cut(s) 557, 3850
BstBAI YACGTR 4 cut(s) 1343, 3156, 3542, 5039
BstDSI CCRYGG 4 cut(s) 1778, 2989, 3432, 4017
BstENI CCTNNNNNAGG 1 cut(s) 2810
BstF5I GGATG 9 cut(s) 1984, 2152, 2821, 2865, 3226, 3301, 3913, 5254, 5265
BstFNI CGCG 2 cut(s) 753, 4377
BstHHI GCGC 3 cut(s) 4379, 4696, 5321
BstMAI GTCTC 7 cut(s) 1877, 2448, 2556, 3473, 4575, 4774, 5163
BstNI CCWGG 9 cut(s) 445, 506, 563, 1391, 2111, 3168, 3807, 4525, 4718
BstNSI RCATGY 4 cut(s) 2439, 3290, 3322, 5559
BstPAI GACNNNNGTC 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 444
BstSNI TACGTA 2 cut(s) 1343, 3542
BstUI CGCG 2 cut(s) 753, 4377
BstV2I GAAGAC 5 cut(s) 159, 2583, 4170, 4620, 5469
BstX2I RGATCY 8 cut(s) 220, 1151, 2011, 2376, 3802, 4198, 4427, 5263
BstXI CCANNNNNNTGG 1 cut(s) 2211
BstYI RGATCY 8 cut(s) 220, 1151, 2011, 2376, 3802, 4198, 4427, 5263
Bsu36I CCTNAGG 1 cut(s) 2792
BtgI CCRYGG 4 cut(s) 1778, 2989, 3432, 4017
BtgZI GCGATG 2 cut(s) 1377, 2913
BtrI CACGTC 2 cut(s) 41, 5580
BtsCI GGATG 9 cut(s) 1984, 2152, 2821, 2865, 3226, 3301, 3913, 5254, 5265
BtsI GCAGTG 3 cut(s) 1757, 2060, 4407
BveI ACCTGC 2 cut(s) 1031, 1593
CaiI CAGNNNCTG 4 cut(s) 1132, 1585, 2293, 2791
CciI TCATGA 5 cut(s) 370, 378, 1381, 3066, 4666
CfoI GCGC 3 cut(s) 4379, 4696, 5321
Cfr13I GGNCC 6 cut(s) 440, 441, 1734, 1754, 1844, 3409
CseI GACGC 3 cut(s) 2573, 3929, 4223
Csp6I GTAC 5 cut(s) 322, 691, 1287, 3543, 5539
CviQI GTAC 5 cut(s) 322, 691, 1287, 3543, 5539
EaeI YGGCCR 4 cut(s) 2201, 3097, 3164, 4530
EciI GGCGGA 2 cut(s) 1448, 5423
Eco105I TACGTA 2 cut(s) 1343, 3542
Eco130I CCWWGG 8 cut(s) 1767, 1967, 2989, 3432, 4017, 4179, 4768, 5513
Eco24I GRGCYC 4 cut(s) 444, 1928, 3376, 5404
Eco32I GATATC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 1844, 3409
Eco72I CACGTG 1 cut(s) 3156
Eco81I CCTNAGG 1 cut(s) 2792
EcoNI CCTNNNNNAGG 1 cut(s) 2810
EcoO109I RGGNCCY 3 cut(s) 440, 441, 3409
EcoRI GAATTC 2 cut(s) 3078, 4406
EcoRII CCWGG 9 cut(s) 443, 504, 561, 1389, 2109, 3166, 3805, 4523, 4716
EcoRV GATATC 1 cut(s) 705
EcoT14I CCWWGG 8 cut(s) 1767, 1967, 2989, 3432, 4017, 4179, 4768, 5513
EcoT22I ATGCAT 1 cut(s) 1544
EcoT38I GRGCYC 4 cut(s) 444, 1928, 3376, 5404
ErhI CCWWGG 8 cut(s) 1767, 1967, 2989, 3432, 4017, 4179, 4768, 5513
Esp3I CGTCTC 1 cut(s) 2448
FalI AAGNNNNNCTT 8 cut(s) 3117, 3149, 3585, 3617, 5162, 5194, 5506, 5538
FaqI GGGAC 3 cut(s) 4428, 4878, 4939
FauI CCCGC 1 cut(s) 1654
FbaI TGATCA 4 cut(s) 3063, 3450, 4321, 4579
FblI GTMKAC 3 cut(s) 1086, 4362, 4508
FokI GGATG 9 cut(s) 1991, 2159, 2828, 2872, 3233, 3308, 3920, 5261, 5272
FriOI GRGCYC 4 cut(s) 444, 1928, 3376, 5404
FspI TGCGCA 1 cut(s) 5320
GlaI GCGC 3 cut(s) 4378, 4695, 5320
GsaI CCCAGC 2 cut(s) 2967, 5016
GsuI CTGGAG 3 cut(s) 638, 1373, 3635
HapII CCGG 4 cut(s) 402, 1928, 2758, 5275
HgaI GACGC 3 cut(s) 2573, 3929, 4223
HhaI GCGC 3 cut(s) 4379, 4696, 5321
Hin1I GRCGYC 3 cut(s) 375, 969, 3351
Hin6I GCGC 3 cut(s) 4377, 4694, 5319
HinP1I GCGC 3 cut(s) 4377, 4694, 5319
HincII GTYRAC 5 cut(s) 3328, 3991, 4747, 4962, 5308
HindII GTYRAC 5 cut(s) 3328, 3991, 4747, 4962, 5308
HindIII AAGCTT 3 cut(s) 1814, 1934, 3126
HpaI GTTAAC 1 cut(s) 4747
HpaII CCGG 4 cut(s) 402, 1928, 2758, 5275
HphI GGTGA 6 cut(s) 1736, 2403, 3074, 3525, 4172, 4343
Hpy99I CGWCG 2 cut(s) 971, 3356
Hsp92I GRCGYC 3 cut(s) 375, 969, 3351
HspAI GCGC 3 cut(s) 4377, 4694, 5319
Kpn2I TCCGGA 1 cut(s) 2757
Ksp22I TGATCA 4 cut(s) 3063, 3450, 4321, 4579
KspAI GTTAAC 1 cut(s) 4747
LmnI GCTCC 6 cut(s) 421, 518, 753, 2928, 3774, 4339
MaeIII GTNAC 9 cut(s) 391, 2409, 3823, 3881, 4731, 5034, 5081, 5477, 5527
MflI RGATCY 8 cut(s) 220, 1151, 2011, 2376, 3802, 4198, 4427, 5263
MhlI GDGCHC 8 cut(s) 444, 1928, 3280, 3376, 3648, 3755, 4099, 5404
MlsI TGGCCA 3 cut(s) 3099, 3166, 4532
MluNI TGGCCA 3 cut(s) 3099, 3166, 4532
MlyI GAGTC 7 cut(s) 149, 1982, 2566, 2663, 4358, 4577, 4580
MmeI TCCRAC 1 cut(s) 1043
Mox20I TGGCCA 3 cut(s) 3099, 3166, 4532
Mph1103I ATGCAT 1 cut(s) 1544
MroI TCCGGA 1 cut(s) 2757
MroXI GAANNNNTTC 4 cut(s) 845, 1241, 2194, 4227
MscI TGGCCA 3 cut(s) 3099, 3166, 4532
MslI CAYNNNNRTG 4 cut(s) 1036, 2416, 2845, 5394
Msp20I TGGCCA 3 cut(s) 3099, 3166, 4532
MspA1I CMGCKG 5 cut(s) 599, 836, 1487, 2516, 3839
MspI CCGG 4 cut(s) 402, 1928, 2758, 5275
Mva1269I GAATGC 4 cut(s) 551, 1461, 4108, 4555
MvaI CCWGG 9 cut(s) 445, 506, 563, 1391, 2111, 3168, 3807, 4525, 4718
MvnI CGCG 2 cut(s) 753, 4377
NciI CCSGG 2 cut(s) 403, 1928
NcoI CCATGG 3 cut(s) 2989, 3432, 4017
NheI GCTAGC 1 cut(s) 2975
NmeAIII GCCGAG 1 cut(s) 2179
NmuCI GTSAC 4 cut(s) 391, 2409, 5081, 5527
NsbI TGCGCA 1 cut(s) 5320
NsiI ATGCAT 1 cut(s) 1544
NspI RCATGY 4 cut(s) 2439, 3290, 3322, 5559
PagI TCATGA 5 cut(s) 370, 378, 1381, 3066, 4666
PciI ACATGT 2 cut(s) 2435, 3318
PcsI WCGNNNNNNNCGW 2 cut(s) 3900, 4718
PctI GAATGC 4 cut(s) 551, 1461, 4108, 4555
PdmI GAANNNNTTC 4 cut(s) 845, 1241, 2194, 4227
PflMI CCANNNNNTGG 1 cut(s) 3233
PleI GAGTC 7 cut(s) 149, 1982, 2565, 2662, 4358, 4576, 4580
PmaCI CACGTG 1 cut(s) 3156
PmlI CACGTG 1 cut(s) 3156
PpsI GAGTC 7 cut(s) 149, 1982, 2565, 2662, 4358, 4576, 4580
Ppu21I YACGTR 4 cut(s) 1343, 3156, 3542, 5039
PpuMI RGGWCCY 1 cut(s) 3409
PscI ACATGT 2 cut(s) 2435, 3318
PshAI GACNNNNGTC 1 cut(s) 345
PshBI ATTAAT 2 cut(s) 783, 1566
Psp1406I AACGTT 1 cut(s) 4712
Psp5II RGGWCCY 1 cut(s) 3409
Psp6I CCWGG 9 cut(s) 443, 504, 561, 1389, 2109, 3166, 3805, 4523, 4716
PspCI CACGTG 1 cut(s) 3156
PspFI CCCAGC 2 cut(s) 2963, 5012
PspGI CCWGG 9 cut(s) 443, 504, 561, 1389, 2109, 3166, 3805, 4523, 4716
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 6 cut(s) 440, 441, 1734, 1754, 1844, 3409
PspPPI RGGWCCY 1 cut(s) 3409
PstI CTGCAG 4 cut(s) 91, 2002, 3958, 4332
PstNI CAGNNNCTG 4 cut(s) 1132, 1585, 2293, 2791
PsuI RGATCY 8 cut(s) 220, 1151, 2011, 2376, 3802, 4198, 4427, 5263
PvuII CAGCTG 5 cut(s) 599, 836, 1487, 2516, 3839
RsaI GTAC 5 cut(s) 323, 692, 1288, 3544, 5540
RsaNI GTAC 5 cut(s) 322, 691, 1287, 3543, 5539
RseI CAYNNNNRTG 4 cut(s) 1036, 2416, 2845, 5394
Sau96I GGNCC 6 cut(s) 440, 441, 1734, 1754, 1844, 3409
SchI GAGTC 7 cut(s) 149, 1982, 2566, 2663, 4358, 4577, 4580
SduI GDGCHC 8 cut(s) 444, 1928, 3280, 3376, 3648, 3755, 4099, 5404
SinI GGWCC 2 cut(s) 1844, 3409
SmiMI CAYNNNNRTG 4 cut(s) 1036, 2416, 2845, 5394
SmlI CTYRAG 6 cut(s) 483, 2810, 2930, 3123, 4588, 5297
SmoI CTYRAG 6 cut(s) 483, 2810, 2930, 3123, 4588, 5297
SnaBI TACGTA 2 cut(s) 1343, 3542
SpeI ACTAGT 1 cut(s) 2632
SsiI CCGC 7 cut(s) 93, 751, 1433, 1661, 3787, 5216, 5408
StyI CCWWGG 8 cut(s) 1767, 1967, 2989, 3432, 4017, 4179, 4768, 5513
TaqII GACCGA 2 cut(s) 891, 2879
TatI WGTACW 2 cut(s) 321, 5538
TauI GCSGC 2 cut(s) 95, 5219
TseFI GTSAC 4 cut(s) 391, 2409, 5081, 5527
Tsp45I GTSAC 4 cut(s) 391, 2409, 5081, 5527
TspGWI ACGGA 5 cut(s) 1304, 3127, 4697, 4803, 4887
Van91I CCANNNNNTGG 1 cut(s) 3233
VpaK11BI GGWCC 2 cut(s) 1844, 3409
VspI ATTAAT 2 cut(s) 783, 1566
XagI CCTNNNNNAGG 1 cut(s) 2810
XbaI TCTAGA 3 cut(s) 125, 736, 4849
XceI RCATGY 4 cut(s) 2439, 3290, 3322, 5559
XcmI CCANNNNNNNNNTGG 1 cut(s) 3107
XmiI GTMKAC 3 cut(s) 1086, 4362, 4508
XmnI GAANNNNTTC 4 cut(s) 845, 1241, 2194, 4227
ZraI GACGTC 3 cut(s) 376, 970, 3352
Zsp2I ATGCAT 1 cut(s) 1544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.