E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58410 AT5G58410 |
| fragaria_vesca | FvH4_3g39950 FvH4_3g39950 FvH4_3g39950 |
| malus_domestica | MD03G1058100.v1.1 |
| prunus_persica | Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1 |
| pyrus_communis | pycom03g04640 |
| rosa_chinensis | RchiOBHm_Chr5g0071961 |
| rosa_laevigata | RLG00000036266 |
| rosa_multiflora | Rmu_sc0012806.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00009240 |
| rosa_rugosa | Rorug05G0415700 |
| rosa_samantha | Rh5AG471700 Rh5BG491700 Rh5CG515500 Rh5DG503100 |
| rosa_wichuraiana | Rw5G043850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 899 |
| AarI | CACCTGC | 1 cut(s) | 649 |
| Acc36I | ACCTGC | 3 cut(s) | 649, 2462, 5630 |
| Acc65I | GGTACC | 1 cut(s) | 3494 |
| AccB1I | GGYRCC | 2 cut(s) | 734, 3494 |
| AccBSI | CCGCTC | 1 cut(s) | 5178 |
| AccI | GTMKAC | 1 cut(s) | 4706 |
| AccII | CGCG | 1 cut(s) | 4414 |
| AccIII | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| AcoI | YGGCCR | 4 cut(s) | 297, 687, 3067, 3233 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AcvI | CACGTG | 1 cut(s) | 3744 |
| AcyI | GRCGYC | 1 cut(s) | 65 |
| AdeI | CACNNNGTG | 3 cut(s) | 1162, 2600, 3747 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 146, 311, 402, 1925, 2306, 4434 |
| AflII | CTTAAG | 2 cut(s) | 3442, 4964 |
| AflIII | ACRYGT | 3 cut(s) | 4701, 4807, 5021 |
| AhlI | ACTAGT | 1 cut(s) | 4882 |
| AjiI | CACGTC | 1 cut(s) | 5606 |
| AjnI | CCWGG | 8 cut(s) | 129, 730, 2103, 2723, 3197, 3235, 3306, 4626 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1965, 1966, 1997, 1998 |
| Alw21I | GWGCWC | 2 cut(s) | 2023, 3451 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 473, 1844, 5006 |
| Ama87I | CYCGRG | 1 cut(s) | 4775 |
| Aor13HI | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5522, 5554 |
| AseI | ATTAAT | 1 cut(s) | 3927 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1290, 2745, 4983, 5038 |
| Asp718I | GGTACC | 1 cut(s) | 3494 |
| AspLEI | GCGC | 4 cut(s) | 418, 3914, 4414, 5523 |
| AsuC2I | CCSGG | 2 cut(s) | 1446, 2491 |
| AsuHPI | GGTGA | 7 cut(s) | 385, 673, 1806, 1940, 2612, 2750, 2996 |
| AvaI | CYCGRG | 1 cut(s) | 4775 |
| AvaII | GGWCC | 9 cut(s) | 440, 1769, 1859, 2965, 4232, 4297, 4526, 4824, 5157 |
| BalI | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| BamHI | GGATCC | 2 cut(s) | 979, 2938 |
| BanI | GGYRCC | 2 cut(s) | 734, 3494 |
| BanII | GRGCYC | 2 cut(s) | 193, 3451 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5352, 5384 |
| BauI | CACGAG | 3 cut(s) | 2022, 3223, 4385 |
| BbrPI | CACGTG | 1 cut(s) | 3744 |
| BbsI | GAAGAC | 3 cut(s) | 1499, 4650, 5360 |
| Bbv12I | GWGCWC | 2 cut(s) | 2023, 3451 |
| BbvCI | CCTCAGC | 1 cut(s) | 4359 |
| BceAI | ACGGC | 4 cut(s) | 61, 383, 573, 5405 |
| BciT130I | CCWGG | 8 cut(s) | 131, 732, 2105, 2725, 3199, 3237, 3308, 4628 |
| BclI | TGATCA | 1 cut(s) | 3738 |
| BcnI | CCSGG | 2 cut(s) | 1446, 2491 |
| BcuI | ACTAGT | 1 cut(s) | 4882 |
| BfmI | CTRYAG | 7 cut(s) | 194, 1614, 3249, 4049, 4185, 5007, 5013 |
| BfoI | RGCGCY | 1 cut(s) | 419 |
| BfrI | CTTAAG | 2 cut(s) | 3442, 4964 |
| BfuAI | ACCTGC | 3 cut(s) | 649, 2462, 5630 |
| BlpI | GCTNAGC | 1 cut(s) | 4517 |
| BmcAI | AGTACT | 1 cut(s) | 2565 |
| Bme18I | GGWCC | 9 cut(s) | 440, 1769, 1859, 2965, 4232, 4297, 4526, 4824, 5157 |
| BmeT110I | CYCGRG | 1 cut(s) | 4775 |
| BmgBI | CACGTC | 1 cut(s) | 5606 |
| BmiI | GGNNCC | 9 cut(s) | 441, 736, 981, 2940, 3496, 4298, 4299, 4528, 5041 |
| BmrI | ACTGGG | 2 cut(s) | 461, 2662 |
| BmuI | ACTGGG | 2 cut(s) | 461, 2662 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1052, 5155 |
| BpiI | GAAGAC | 3 cut(s) | 1499, 4650, 5360 |
| BpmI | CTGGAG | 5 cut(s) | 507, 1607, 2126, 3860, 5124 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4359 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4517 |
| BpuEI | CTTGAG | 4 cut(s) | 468, 897, 1300, 1405 |
| BpuMI | CCSGG | 2 cut(s) | 1446, 2491 |
| BsaAI | YACGTR | 4 cut(s) | 1518, 3744, 4894, 5171 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2153 |
| BsaHI | GRCGYC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 8 cut(s) | 443, 1444, 1985, 2490, 2980, 3042, 3306, 4150 |
| BsaWI | WCCGGW | 4 cut(s) | 2145, 3010, 3888, 5508 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 3142, 3172, 4010, 4040, 5407, 5437 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 146, 311, 402, 1925, 2306, 4434 |
| Bse1I | ACTGG | 7 cut(s) | 467, 2657, 3938, 4888, 4913, 5041, 5698 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2153 |
| BseAI | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| BseBI | CCWGG | 8 cut(s) | 131, 732, 2105, 2725, 3199, 3237, 3308, 4628 |
| BseDI | CCNNGG | 8 cut(s) | 443, 1444, 1985, 2490, 2980, 3042, 3306, 4150 |
| BseJI | GATNNNNATC | 1 cut(s) | 2153 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 146, 311, 402, 1925, 2306, 4434 |
| BseMII | CTCAG | 8 cut(s) | 581, 1617, 2058, 2806, 2948, 4046, 4350, 4508 |
| BseNI | ACTGG | 7 cut(s) | 467, 2657, 3938, 4888, 4913, 5041, 5698 |
| BseRI | GAGGAG | 5 cut(s) | 129, 1445, 2289, 2292, 5567 |
| BseYI | CCCAGC | 1 cut(s) | 2728 |
| BsgI | GTGCAG | 7 cut(s) | 936, 2106, 3360, 3831, 3965, 4330, 5239 |
| Bsh1236I | CGCG | 1 cut(s) | 4414 |
| BshNI | GGYRCC | 2 cut(s) | 734, 3494 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2023, 3451 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4775 |
| BsiSI | CCGG | 7 cut(s) | 147, 1446, 2146, 2490, 3011, 3889, 5509 |
| BsiWI | CGTACG | 1 cut(s) | 5473 |
| BslFI | GGGAC | 3 cut(s) | 453, 893, 4310 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 146, 311, 402, 1925, 2306, 4434 |
| BsmBI | CGTCTC | 3 cut(s) | 12, 1905, 3645 |
| BsmFI | GGGAC | 3 cut(s) | 453, 893, 4310 |
| BsmI | GAATGC | 3 cut(s) | 1240, 1292, 2110 |
| BsoBI | CYCGRG | 1 cut(s) | 4775 |
| Bsp1286I | GDGCHC | 3 cut(s) | 193, 2023, 3451 |
| Bsp13I | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| Bsp1407I | TGTACA | 3 cut(s) | 1060, 5056, 5408 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4517 |
| Bsp19I | CCATGG | 1 cut(s) | 1985 |
| BspCNI | CTCAG | 8 cut(s) | 582, 1616, 2059, 2805, 2947, 4045, 4351, 4509 |
| BspEI | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| BspFNI | CGCG | 1 cut(s) | 4414 |
| BspHI | TCATGA | 2 cut(s) | 370, 2254 |
| BspLI | GGNNCC | 9 cut(s) | 441, 736, 981, 2940, 3496, 4298, 4299, 4528, 5041 |
| BspMAI | CTGCAG | 4 cut(s) | 1618, 4053, 5011, 5017 |
| BspMI | ACCTGC | 3 cut(s) | 649, 2462, 5630 |
| BspQI | GCTCTTC | 1 cut(s) | 4974 |
| BspT107I | GGYRCC | 2 cut(s) | 734, 3494 |
| BspTI | CTTAAG | 2 cut(s) | 3442, 4964 |
| BsrBI | CCGCTC | 1 cut(s) | 5178 |
| BsrGI | TGTACA | 3 cut(s) | 1060, 5056, 5408 |
| BsrI | ACTGG | 7 cut(s) | 467, 2657, 3938, 4888, 4913, 5041, 5698 |
| BssECI | CCNNGG | 8 cut(s) | 443, 1444, 1985, 2490, 2980, 3042, 3306, 4150 |
| BssNI | GRCGYC | 1 cut(s) | 65 |
| BssSI | CACGAG | 3 cut(s) | 2022, 3223, 4385 |
| BssT1I | CCWWGG | 4 cut(s) | 1985, 2980, 3042, 4150 |
| Bst2BI | CACGAG | 3 cut(s) | 2022, 3223, 4385 |
| Bst2UI | CCWGG | 8 cut(s) | 131, 732, 2105, 2725, 3199, 3237, 3308, 4628 |
| Bst6I | CTCTTC | 8 cut(s) | 197, 2403, 2856, 3281, 3307, 4674, 4937, 4974 |
| BstACI | GRCGYC | 1 cut(s) | 65 |
| BstAFI | CTTAAG | 2 cut(s) | 3442, 4964 |
| BstAPI | GCANNNNNTGC | 8 cut(s) | 649, 1181, 1597, 3560, 3952, 4259, 5006, 5622 |
| BstAUI | TGTACA | 3 cut(s) | 1060, 5056, 5408 |
| BstBAI | YACGTR | 4 cut(s) | 1518, 3744, 4894, 5171 |
| BstDSI | CCRYGG | 2 cut(s) | 443, 1985 |
| BstFNI | CGCG | 1 cut(s) | 4414 |
| BstH2I | RGCGCY | 1 cut(s) | 419 |
| BstHHI | GCGC | 4 cut(s) | 418, 3914, 4414, 5523 |
| BstNI | CCWGG | 8 cut(s) | 131, 732, 2105, 2725, 3199, 3237, 3308, 4628 |
| BstNSI | RCATGY | 6 cut(s) | 767, 1655, 1727, 2536, 4705, 4811 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1052, 5155 |
| BstSFI | CTRYAG | 7 cut(s) | 194, 1614, 3249, 4049, 4185, 5007, 5013 |
| BstSNI | TACGTA | 1 cut(s) | 4894 |
| BstUI | CGCG | 1 cut(s) | 4414 |
| BstV2I | GAAGAC | 3 cut(s) | 1499, 4650, 5360 |
| BstX2I | RGATCY | 7 cut(s) | 220, 979, 1115, 2117, 2843, 2938, 4174 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2104, 2247, 3065 |
| BstYI | RGATCY | 7 cut(s) | 220, 979, 1115, 2117, 2843, 2938, 4174 |
| BtgI | CCRYGG | 2 cut(s) | 443, 1985 |
| BtgZI | GCGATG | 4 cut(s) | 165, 1221, 4848, 5218 |
| BtrI | CACGTC | 1 cut(s) | 5606 |
| BtsI | GCAGTG | 4 cut(s) | 813, 2078, 2162, 4497 |
| BveI | ACCTGC | 3 cut(s) | 649, 2462, 5630 |
| CaiI | CAGNNNCTG | 3 cut(s) | 473, 1844, 5006 |
| CciI | TCATGA | 2 cut(s) | 370, 2254 |
| CfoI | GCGC | 4 cut(s) | 418, 3914, 4414, 5523 |
| CseI | GACGC | 3 cut(s) | 54, 3662, 4050 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 679, 714 |
| DraIII | CACNNNGTG | 3 cut(s) | 1162, 2600, 3747 |
| EaeI | YGGCCR | 4 cut(s) | 297, 687, 3067, 3233 |
| Eam1104I | CTCTTC | 8 cut(s) | 197, 2403, 2856, 3281, 3307, 4674, 4937, 4974 |
| EarI | CTCTTC | 8 cut(s) | 197, 2403, 2856, 3281, 3307, 4674, 4937, 4974 |
| EciI | GGCGGA | 1 cut(s) | 2836 |
| Ecl136II | GAGCTC | 1 cut(s) | 3449 |
| Eco105I | TACGTA | 1 cut(s) | 4894 |
| Eco130I | CCWWGG | 4 cut(s) | 1985, 2980, 3042, 4150 |
| Eco24I | GRGCYC | 2 cut(s) | 193, 3451 |
| Eco32I | GATATC | 2 cut(s) | 666, 3105 |
| Eco47I | GGWCC | 9 cut(s) | 440, 1769, 1859, 2965, 4232, 4297, 4526, 4824, 5157 |
| Eco53kI | GAGCTC | 1 cut(s) | 3449 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| Eco72I | CACGTG | 1 cut(s) | 3744 |
| Eco88I | CYCGRG | 1 cut(s) | 4775 |
| EcoICRI | GAGCTC | 1 cut(s) | 3449 |
| EcoO109I | RGGNCCY | 3 cut(s) | 162, 4297, 4526 |
| EcoRI | GAATTC | 2 cut(s) | 1202, 4505 |
| EcoRII | CCWGG | 8 cut(s) | 129, 730, 2103, 2723, 3197, 3235, 3306, 4626 |
| EcoRV | GATATC | 2 cut(s) | 666, 3105 |
| EcoT14I | CCWWGG | 4 cut(s) | 1985, 2980, 3042, 4150 |
| EcoT22I | ATGCAT | 2 cut(s) | 654, 2755 |
| EcoT38I | GRGCYC | 2 cut(s) | 193, 3451 |
| ErhI | CCWWGG | 4 cut(s) | 1985, 2980, 3042, 4150 |
| Esp3I | CGTCTC | 3 cut(s) | 12, 1905, 3645 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1033, 1065, 4314, 4346, 5510, 5542 |
| FaqI | GGGAC | 3 cut(s) | 453, 893, 4310 |
| FauI | CCCGC | 2 cut(s) | 47, 5146 |
| FbaI | TGATCA | 1 cut(s) | 3738 |
| FblI | GTMKAC | 1 cut(s) | 4706 |
| FriOI | GRGCYC | 2 cut(s) | 193, 3451 |
| GlaI | GCGC | 4 cut(s) | 417, 3913, 4413, 5522 |
| GsaI | CCCAGC | 1 cut(s) | 2732 |
| GsuI | CTGGAG | 5 cut(s) | 507, 1607, 2126, 3860, 5124 |
| HaeII | RGCGCY | 1 cut(s) | 419 |
| HapII | CCGG | 7 cut(s) | 147, 1446, 2146, 2490, 3011, 3889, 5509 |
| HgaI | GACGC | 3 cut(s) | 54, 3662, 4050 |
| HhaI | GCGC | 4 cut(s) | 418, 3914, 4414, 5523 |
| Hin1I | GRCGYC | 1 cut(s) | 65 |
| Hin6I | GCGC | 4 cut(s) | 416, 3912, 4412, 5521 |
| HinP1I | GCGC | 4 cut(s) | 416, 3912, 4412, 5521 |
| HincII | GTYRAC | 5 cut(s) | 2029, 4093, 4462, 4707, 5590 |
| HindII | GTYRAC | 5 cut(s) | 2029, 4093, 4462, 4707, 5590 |
| HindIII | AAGCTT | 4 cut(s) | 233, 240, 1385, 3962 |
| HpaII | CCGG | 7 cut(s) | 147, 1446, 2146, 2490, 3011, 3889, 5509 |
| HphI | GGTGA | 7 cut(s) | 385, 673, 1806, 1940, 2612, 2750, 2996 |
| Hpy99I | CGWCG | 3 cut(s) | 70, 82, 119 |
| HpyCH4IV | ACGT | 9 cut(s) | 114, 906, 1517, 1898, 3743, 4893, 5023, 5170, 5605 |
| HpySE526I | ACGT | 9 cut(s) | 114, 906, 1517, 1898, 3743, 4893, 5023, 5170, 5605 |
| Hsp92I | GRCGYC | 1 cut(s) | 65 |
| HspAI | GCGC | 4 cut(s) | 416, 3912, 4412, 5521 |
| KflI | GGGWCCC | 1 cut(s) | 4297 |
| Kpn2I | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| KpnI | GGTACC | 1 cut(s) | 3498 |
| Ksp22I | TGATCA | 1 cut(s) | 3738 |
| LguI | GCTCTTC | 1 cut(s) | 4974 |
| MaeII | ACGT | 9 cut(s) | 114, 906, 1517, 1898, 3743, 4893, 5023, 5170, 5605 |
| MbiI | CCGCTC | 1 cut(s) | 5178 |
| MflI | RGATCY | 7 cut(s) | 220, 979, 1115, 2117, 2843, 2938, 4174 |
| MhlI | GDGCHC | 3 cut(s) | 193, 2023, 3451 |
| MlsI | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| MluNI | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| MlyI | GAGTC | 3 cut(s) | 3184, 3635, 5425 |
| MmeI | TCCRAC | 6 cut(s) | 97, 1025, 1509, 1747, 3526, 3971 |
| Mox20I | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| Mph1103I | ATGCAT | 2 cut(s) | 654, 2755 |
| MroI | TCCGGA | 3 cut(s) | 3010, 3888, 5508 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1290, 2745, 4983, 5038 |
| MscI | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1000, 2228, 2758, 2893 |
| Msp20I | TGGCCA | 3 cut(s) | 689, 3069, 3235 |
| MspA1I | CMGCKG | 6 cut(s) | 424, 1841, 3784, 3920, 4409, 5012 |
| MspCI | CTTAAG | 2 cut(s) | 3442, 4964 |
| MspI | CCGG | 7 cut(s) | 147, 1446, 2146, 2490, 3011, 3889, 5509 |
| Mva1269I | GAATGC | 3 cut(s) | 1240, 1292, 2110 |
| MvaI | CCWGG | 8 cut(s) | 131, 732, 2105, 2725, 3199, 3237, 3308, 4628 |
| MvnI | CGCG | 1 cut(s) | 4414 |
| NciI | CCSGG | 2 cut(s) | 1446, 2491 |
| NcoI | CCATGG | 1 cut(s) | 1985 |
| NlaIV | GGNNCC | 9 cut(s) | 441, 736, 981, 2940, 3496, 4298, 4299, 4528, 5041 |
| NmuCI | GTSAC | 4 cut(s) | 391, 1928, 4382, 5171 |
| NsiI | ATGCAT | 2 cut(s) | 654, 2755 |
| NspI | RCATGY | 6 cut(s) | 767, 1655, 1727, 2536, 4705, 4811 |
| PaeI | GCATGC | 1 cut(s) | 1655 |
| PaeR7I | CTCGAG | 1 cut(s) | 4775 |
| PagI | TCATGA | 2 cut(s) | 370, 2254 |
| PaqCI | CACCTGC | 1 cut(s) | 649 |
| PciI | ACATGT | 2 cut(s) | 4701, 4807 |
| PciSI | GCTCTTC | 1 cut(s) | 4974 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 74, 111 |
| PctI | GAATGC | 3 cut(s) | 1240, 1292, 2110 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1290, 2745, 4983, 5038 |
| Pfl23II | CGTACG | 1 cut(s) | 5473 |
| PflFI | GACNNNGTC | 1 cut(s) | 467 |
| PleI | GAGTC | 3 cut(s) | 3184, 3635, 5424 |
| PmaCI | CACGTG | 1 cut(s) | 3744 |
| PmlI | CACGTG | 1 cut(s) | 3744 |
| PpsI | GAGTC | 3 cut(s) | 3184, 3635, 5424 |
| Ppu21I | YACGTR | 4 cut(s) | 1518, 3744, 4894, 5171 |
| PpuMI | RGGWCCY | 2 cut(s) | 4297, 4526 |
| PscI | ACATGT | 2 cut(s) | 4701, 4807 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1052, 5155 |
| PshBI | ATTAAT | 1 cut(s) | 3927 |
| PsiI | TTATAA | 1 cut(s) | 899 |
| Psp124BI | GAGCTC | 1 cut(s) | 3451 |
| Psp5II | RGGWCCY | 2 cut(s) | 4297, 4526 |
| Psp6I | CCWGG | 8 cut(s) | 129, 730, 2103, 2723, 3197, 3235, 3306, 4626 |
| PspCI | CACGTG | 1 cut(s) | 3744 |
| PspFI | CCCAGC | 1 cut(s) | 2728 |
| PspGI | CCWGG | 8 cut(s) | 129, 730, 2103, 2723, 3197, 3235, 3306, 4626 |
| PspLI | CGTACG | 1 cut(s) | 5473 |
| PspN4I | GGNNCC | 9 cut(s) | 441, 736, 981, 2940, 3496, 4298, 4299, 4528, 5041 |
| PspPPI | RGGWCCY | 2 cut(s) | 4297, 4526 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4605, 4637 |
| PstI | CTGCAG | 4 cut(s) | 1618, 4053, 5011, 5017 |
| PstNI | CAGNNNCTG | 3 cut(s) | 473, 1844, 5006 |
| PsuI | RGATCY | 7 cut(s) | 220, 979, 1115, 2117, 2843, 2938, 4174 |
| PsyI | GACNNNGTC | 1 cut(s) | 467 |
| PvuII | CAGCTG | 4 cut(s) | 424, 3784, 3920, 5012 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1000, 2228, 2758, 2893 |
| SacI | GAGCTC | 1 cut(s) | 3451 |
| SalI | GTCGAC | 1 cut(s) | 4705 |
| SapI | GCTCTTC | 1 cut(s) | 4974 |
| ScaI | AGTACT | 1 cut(s) | 2565 |
| SchI | GAGTC | 3 cut(s) | 3184, 3635, 5425 |
| SduI | GDGCHC | 3 cut(s) | 193, 2023, 3451 |
| SfcI | CTRYAG | 7 cut(s) | 194, 1614, 3249, 4049, 4185, 5007, 5013 |
| Sfr274I | CTCGAG | 1 cut(s) | 4775 |
| SinI | GGWCC | 9 cut(s) | 440, 1769, 1859, 2965, 4232, 4297, 4526, 4824, 5157 |
| SlaI | CTCGAG | 1 cut(s) | 4775 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1000, 2228, 2758, 2893 |
| SmlI | CTYRAG | 7 cut(s) | 483, 912, 1315, 1420, 3442, 4775, 4964 |
| SmoI | CTYRAG | 7 cut(s) | 483, 912, 1315, 1420, 3442, 4775, 4964 |
| SnaBI | TACGTA | 1 cut(s) | 4894 |
| SpeI | ACTAGT | 1 cut(s) | 4882 |
| SphI | GCATGC | 1 cut(s) | 1655 |
| SspI | AATATT | 4 cut(s) | 827, 2060, 3216, 4920 |
| SstI | GAGCTC | 1 cut(s) | 3451 |
| StyI | CCWWGG | 4 cut(s) | 1985, 2980, 3042, 4150 |
| TaiI | ACGT | 9 cut(s) | 117, 909, 1520, 1901, 3746, 4896, 5026, 5173, 5608 |
| TaqI | TCGA | 9 cut(s) | 1273, 1354, 2290, 2806, 3193, 4333, 4706, 4776, 5550 |
| TatI | WGTACW | 6 cut(s) | 1060, 1072, 2333, 2563, 5056, 5408 |
| TauI | GCSGC | 7 cut(s) | 65, 95, 299, 361, 1844, 2577, 4412 |
| TseFI | GTSAC | 4 cut(s) | 391, 1928, 4382, 5171 |
| Tsp45I | GTSAC | 4 cut(s) | 391, 1928, 4382, 5171 |
| TspGWI | ACGGA | 4 cut(s) | 36, 854, 5354, 5491 |
| Tth111I | GACNNNGTC | 1 cut(s) | 467 |
| Vha464I | CTTAAG | 2 cut(s) | 3442, 4964 |
| VpaK11BI | GGWCC | 9 cut(s) | 440, 1769, 1859, 2965, 4232, 4297, 4526, 4824, 5157 |
| VspI | ATTAAT | 1 cut(s) | 3927 |
| XbaI | TCTAGA | 2 cut(s) | 2263, 4948 |
| XceI | RCATGY | 6 cut(s) | 767, 1655, 1727, 2536, 4705, 4811 |
| XhoI | CTCGAG | 1 cut(s) | 4775 |
| XmiI | GTMKAC | 1 cut(s) | 4706 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1290, 2745, 4983, 5038 |
| ZrmI | AGTACT | 1 cut(s) | 2565 |
| Zsp2I | ATGCAT | 2 cut(s) | 654, 2755 |