E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58410 AT5G58410 |
| fragaria_vesca | FvH4_3g39950 FvH4_3g39950 FvH4_3g39950 |
| malus_domestica | MD03G1058100.v1.1 |
| prunus_persica | Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1 Prupe.6G045900_v2.0.a1 |
| pyrus_communis | pycom03g04640 |
| rosa_chinensis | RchiOBHm_Chr5g0071961 |
| rosa_laevigata | RLG00000036266 |
| rosa_multiflora | Rmu_sc0012806.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00009240 |
| rosa_rugosa | Rorug05G0415700 |
| rosa_samantha | Rh5AG471700 Rh5BG491700 Rh5CG515500 Rh5DG503100 |
| rosa_wichuraiana | Rw5G043850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2645 |
| AarI | CACCTGC | 2 cut(s) | 649, 4867 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4233 |
| AbsI | CCTCGAGG | 1 cut(s) | 131 |
| Acc36I | ACCTGC | 3 cut(s) | 649, 2447, 4867 |
| AccB1I | GGYRCC | 3 cut(s) | 73, 2573, 4954 |
| AccI | GTMKAC | 2 cut(s) | 834, 4321 |
| AccIII | TCCGGA | 1 cut(s) | 2291 |
| AciI | CCGC | 9 cut(s) | 62, 120, 258, 305, 602, 2634, 4105, 4584, 5128 |
| AclWI | GGATC | 7 cut(s) | 215, 974, 987, 1123, 1917, 2374, 2946 |
| AcoI | YGGCCR | 3 cut(s) | 3073, 3239, 3614 |
| AcsI | RAATTY | 8 cut(s) | 1090, 1202, 1619, 1976, 2882, 3046, 4308, 4499 |
| AcuI | CTGAAG | 3 cut(s) | 495, 3695, 3761 |
| AcvI | CACGTG | 1 cut(s) | 3231 |
| AcyI | GRCGYC | 2 cut(s) | 65, 2574 |
| AfaI | GTAC | 9 cut(s) | 1062, 1074, 1520, 2565, 3468, 3687, 3808, 4797, 5058 |
| AfeI | AGCGCT | 3 cut(s) | 497, 4531, 4983 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 268, 2291, 2442, 3173 |
| AflII | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| AflIII | ACRYGT | 1 cut(s) | 4798 |
| AjnI | CCWGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2487, 2519 |
| Alw21I | GWGCWC | 4 cut(s) | 2023, 2321, 3361, 3457 |
| Alw26I | GTCTC | 9 cut(s) | 435, 526, 968, 2935, 3164, 3647, 4241, 4470, 4864 |
| Alw44I | GTGCAC | 1 cut(s) | 2317 |
| AlwI | GGATC | 7 cut(s) | 215, 974, 987, 1123, 1917, 2374, 2946 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 737, 1216, 1844, 2264, 5006 |
| Ama87I | CYCGRG | 1 cut(s) | 131 |
| Aor13HI | TCCGGA | 1 cut(s) | 2291 |
| Aor51HI | AGCGCT | 3 cut(s) | 497, 4531, 4983 |
| ApaLI | GTGCAC | 1 cut(s) | 2317 |
| ApoI | RAATTY | 8 cut(s) | 1090, 1202, 1619, 1976, 2882, 3046, 4308, 4499 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3998, 4030 |
| AseI | ATTAAT | 3 cut(s) | 1056, 3921, 4086 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2745, 3882 |
| AspLEI | GCGC | 5 cut(s) | 498, 2576, 4038, 4532, 4984 |
| AspS9I | GGNCC | 9 cut(s) | 440, 1769, 1859, 2459, 2507, 3899, 4226, 4291, 4774 |
| AsuII | TTCGAA | 1 cut(s) | 4556 |
| AvaI | CYCGRG | 1 cut(s) | 131 |
| AvaII | GGWCC | 8 cut(s) | 440, 1769, 1859, 2459, 3899, 4226, 4291, 4774 |
| BaeGI | GKGCMC | 1 cut(s) | 2321 |
| BalI | TGGCCA | 2 cut(s) | 3075, 3241 |
| BamHI | GGATCC | 1 cut(s) | 979 |
| BanI | GGYRCC | 3 cut(s) | 73, 2573, 4954 |
| BanII | GRGCYC | 2 cut(s) | 3457, 4512 |
| BbrPI | CACGTG | 1 cut(s) | 3231 |
| BbsI | GAAGAC | 5 cut(s) | 733, 1499, 4011, 4641, 4795 |
| Bbv12I | GWGCWC | 4 cut(s) | 2023, 2321, 3361, 3457 |
| BceAI | ACGGC | 1 cut(s) | 61 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2308, 2342 |
| BciT130I | CCWGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| BclI | TGATCA | 1 cut(s) | 3738 |
| BcoDI | GTCTC | 9 cut(s) | 435, 526, 968, 2935, 3164, 3647, 4241, 4470, 4864 |
| BfaI | CTAG | 9 cut(s) | 27, 777, 1413, 2252, 2870, 4473, 4899, 4913, 4940 |
| BfmI | CTRYAG | 6 cut(s) | 951, 1614, 3855, 4179, 5007, 5013 |
| BfoI | RGCGCY | 5 cut(s) | 499, 2577, 4039, 4533, 4985 |
| BfrI | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| BfuAI | ACCTGC | 3 cut(s) | 649, 2447, 4867 |
| BglII | AGATCT | 2 cut(s) | 1948, 2843 |
| BlpI | GCTNAGC | 1 cut(s) | 4511 |
| BmcAI | AGTACT | 2 cut(s) | 1074, 2565 |
| Bme1390I | CCNGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| Bme18I | GGWCC | 8 cut(s) | 440, 1769, 1859, 2459, 3899, 4226, 4291, 4774 |
| BmeT110I | CYCGRG | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 9 cut(s) | 440, 1769, 1859, 2459, 2507, 3899, 4226, 4291, 4774 |
| BmrFI | CCNGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| BmrI | ACTGGG | 2 cut(s) | 3821, 4018 |
| BmuI | ACTGGG | 2 cut(s) | 3821, 4018 |
| BpiI | GAAGAC | 5 cut(s) | 733, 1499, 4011, 4641, 4795 |
| BpmI | CTGGAG | 4 cut(s) | 1571, 3857, 4223, 5124 |
| Bpu10I | CCTNAGC | 1 cut(s) | 522 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4511 |
| Bpu14I | TTCGAA | 1 cut(s) | 4556 |
| BpuEI | CTTGAG | 6 cut(s) | 251, 468, 1555, 3298, 4294, 4429 |
| Bsa29I | ATCGAT | 2 cut(s) | 1081, 5176 |
| BsaAI | YACGTR | 2 cut(s) | 3231, 5171 |
| BsaHI | GRCGYC | 2 cut(s) | 65, 2574 |
| BsaI | GGTCTC | 1 cut(s) | 4241 |
| BsaJI | CCNNGG | 8 cut(s) | 93, 443, 1497, 1985, 2791, 3171, 3172, 3312 |
| BsaWI | WCCGGW | 1 cut(s) | 2291 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2648, 2678, 3144, 3174, 3308, 3338, 4004, 4034 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 268, 2291, 2442, 3173 |
| Bse118I | RCCGGY | 1 cut(s) | 4343 |
| Bse1I | ACTGG | 7 cut(s) | 2240, 2621, 3816, 3932, 4013, 4879, 5041 |
| Bse3DI | GCAATG | 6 cut(s) | 314, 1734, 2078, 4185, 4347, 5115 |
| BseAI | TCCGGA | 1 cut(s) | 2291 |
| BseBI | CCWGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| BseCI | ATCGAT | 2 cut(s) | 1081, 5176 |
| BseDI | CCNNGG | 8 cut(s) | 93, 443, 1497, 1985, 2791, 3171, 3172, 3312 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 268, 2291, 2442, 3173 |
| BseMI | GCAATG | 6 cut(s) | 314, 1734, 2078, 4185, 4347, 5115 |
| BseNI | ACTGG | 7 cut(s) | 2240, 2621, 3816, 3932, 4013, 4879, 5041 |
| BseRI | GAGGAG | 2 cut(s) | 1640, 2408 |
| BseSI | GKGCMC | 1 cut(s) | 2321 |
| BseYI | CCCAGC | 2 cut(s) | 146, 2728 |
| BsgI | GTGCAG | 1 cut(s) | 3959 |
| Bsh1285I | CGRYCG | 1 cut(s) | 466 |
| BshNI | GGYRCC | 3 cut(s) | 73, 2573, 4954 |
| BshVI | ATCGAT | 2 cut(s) | 1081, 5176 |
| BsiEI | CGRYCG | 1 cut(s) | 466 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2023, 2321, 3361, 3457 |
| BsiHKCI | CYCGRG | 1 cut(s) | 131 |
| BsiSI | CCGG | 2 cut(s) | 2292, 4344 |
| BslFI | GGGAC | 4 cut(s) | 453, 2457, 3830, 4304 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 268, 2291, 2442, 3173 |
| BsmAI | GTCTC | 9 cut(s) | 435, 526, 968, 2935, 3164, 3647, 4241, 4470, 4864 |
| BsmBI | CGTCTC | 1 cut(s) | 968 |
| BsmFI | GGGAC | 4 cut(s) | 453, 2457, 3830, 4304 |
| BsmI | GAATGC | 2 cut(s) | 2458, 4201 |
| Bso31I | GGTCTC | 1 cut(s) | 4241 |
| BsoBI | CYCGRG | 1 cut(s) | 131 |
| Bsp119I | TTCGAA | 1 cut(s) | 4556 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2023, 2321, 3361, 3457, 4512 |
| Bsp13I | TCCGGA | 1 cut(s) | 2291 |
| Bsp1407I | TGTACA | 3 cut(s) | 1060, 3685, 5056 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4511 |
| Bsp19I | CCATGG | 2 cut(s) | 443, 1497 |
| BspACI | CCGC | 9 cut(s) | 62, 120, 258, 305, 602, 2634, 4105, 4584, 5128 |
| BspDI | ATCGAT | 2 cut(s) | 1081, 5176 |
| BspEI | TCCGGA | 1 cut(s) | 2291 |
| BspHI | TCATGA | 3 cut(s) | 370, 2242, 2695 |
| BspMAI | CTGCAG | 5 cut(s) | 955, 1618, 3859, 5011, 5017 |
| BspMI | ACCTGC | 3 cut(s) | 649, 2447, 4867 |
| BspPI | GGATC | 7 cut(s) | 215, 974, 987, 1123, 1917, 2374, 2946 |
| BspT104I | TTCGAA | 1 cut(s) | 4556 |
| BspT107I | GGYRCC | 3 cut(s) | 73, 2573, 4954 |
| BspTI | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| BspTNI | GGTCTC | 1 cut(s) | 4241 |
| BsrDI | GCAATG | 6 cut(s) | 314, 1734, 2078, 4185, 4347, 5115 |
| BsrFI | RCCGGY | 1 cut(s) | 4343 |
| BsrGI | TGTACA | 3 cut(s) | 1060, 3685, 5056 |
| BsrI | ACTGG | 7 cut(s) | 2240, 2621, 3816, 3932, 4013, 4879, 5041 |
| BssAI | RCCGGY | 1 cut(s) | 4343 |
| BssECI | CCNNGG | 8 cut(s) | 93, 443, 1497, 1985, 2791, 3171, 3172, 3312 |
| BssNAI | GTATAC | 1 cut(s) | 4322 |
| BssNI | GRCGYC | 2 cut(s) | 65, 2574 |
| BssT1I | CCWWGG | 3 cut(s) | 443, 1497, 2791 |
| Bst1107I | GTATAC | 1 cut(s) | 4322 |
| Bst2UI | CCWGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| Bst6I | CTCTTC | 6 cut(s) | 197, 639, 3313, 3645, 4665, 4965 |
| BstACI | GRCGYC | 2 cut(s) | 65, 2574 |
| BstAFI | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1597, 3566, 4196, 4253, 5006 |
| BstAUI | TGTACA | 3 cut(s) | 1060, 3685, 5056 |
| BstBAI | YACGTR | 2 cut(s) | 3231, 5171 |
| BstBI | TTCGAA | 1 cut(s) | 4556 |
| BstDSI | CCRYGG | 4 cut(s) | 93, 443, 1497, 1985 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 266 |
| BstH2I | RGCGCY | 5 cut(s) | 499, 2577, 4039, 4533, 4985 |
| BstHHI | GCGC | 5 cut(s) | 498, 2576, 4038, 4532, 4984 |
| BstMAI | GTCTC | 9 cut(s) | 435, 526, 968, 2935, 3164, 3647, 4241, 4470, 4864 |
| BstMCI | CGRYCG | 1 cut(s) | 466 |
| BstNI | CCWGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| BstNSI | RCATGY | 4 cut(s) | 767, 1685, 1727, 4802 |
| BstSCI | CCNGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| BstSFI | CTRYAG | 6 cut(s) | 951, 1614, 3855, 4179, 5007, 5013 |
| BstSLI | GKGCMC | 1 cut(s) | 2321 |
| BstV2I | GAAGAC | 5 cut(s) | 733, 1499, 4011, 4641, 4795 |
| BstX2I | RGATCY | 5 cut(s) | 220, 979, 1115, 1948, 2843 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2235, 3071 |
| BstYI | RGATCY | 5 cut(s) | 220, 979, 1115, 1948, 2843 |
| BstZ17I | GTATAC | 1 cut(s) | 4322 |
| Bsu15I | ATCGAT | 2 cut(s) | 1081, 5176 |
| BsuTUI | ATCGAT | 2 cut(s) | 1081, 5176 |
| BtgI | CCRYGG | 4 cut(s) | 93, 443, 1497, 1985 |
| BtgZI | GCGATG | 2 cut(s) | 3062, 4345 |
| BtsI | GCAGTG | 3 cut(s) | 393, 813, 4491 |
| BtsIMutI | CAGTG | 9 cut(s) | 393, 813, 1158, 1681, 3809, 4491, 4660, 5159, 5167 |
| BveI | ACCTGC | 3 cut(s) | 649, 2447, 4867 |
| CaiI | CAGNNNCTG | 5 cut(s) | 737, 1216, 1844, 2264, 5006 |
| CciI | TCATGA | 3 cut(s) | 370, 2242, 2695 |
| CfoI | GCGC | 5 cut(s) | 498, 2576, 4038, 4532, 4984 |
| Cfr10I | RCCGGY | 1 cut(s) | 4343 |
| Cfr13I | GGNCC | 9 cut(s) | 440, 1769, 1859, 2459, 2507, 3899, 4226, 4291, 4774 |
| ClaI | ATCGAT | 2 cut(s) | 1081, 5176 |
| CseI | GACGC | 1 cut(s) | 54 |
| CsiI | ACCWGGT | 1 cut(s) | 4776 |
| Csp6I | GTAC | 9 cut(s) | 1061, 1073, 1519, 2564, 3467, 3686, 3807, 4796, 5057 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5048, 5083 |
| CviQI | GTAC | 9 cut(s) | 1061, 1073, 1519, 2564, 3467, 3686, 3807, 4796, 5057 |
| DinI | GGCGCC | 1 cut(s) | 2575 |
| DraI | TTTAAA | 2 cut(s) | 1282, 4719 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4233 |
| EaeI | YGGCCR | 3 cut(s) | 3073, 3239, 3614 |
| Eam1104I | CTCTTC | 6 cut(s) | 197, 639, 3313, 3645, 4665, 4965 |
| EarI | CTCTTC | 6 cut(s) | 197, 639, 3313, 3645, 4665, 4965 |
| EciI | GGCGGA | 1 cut(s) | 247 |
| Ecl136II | GAGCTC | 1 cut(s) | 3455 |
| Eco130I | CCWWGG | 3 cut(s) | 443, 1497, 2791 |
| Eco24I | GRGCYC | 2 cut(s) | 3457, 4512 |
| Eco31I | GGTCTC | 1 cut(s) | 4241 |
| Eco32I | GATATC | 2 cut(s) | 666, 3061 |
| Eco47I | GGWCC | 8 cut(s) | 440, 1769, 1859, 2459, 3899, 4226, 4291, 4774 |
| Eco47III | AGCGCT | 3 cut(s) | 497, 4531, 4983 |
| Eco53kI | GAGCTC | 1 cut(s) | 3455 |
| Eco57I | CTGAAG | 3 cut(s) | 495, 3695, 3761 |
| Eco72I | CACGTG | 1 cut(s) | 3231 |
| Eco88I | CYCGRG | 1 cut(s) | 131 |
| EcoICRI | GAGCTC | 1 cut(s) | 3455 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 266 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2459, 3899, 4291 |
| EcoRII | CCWGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| EcoRV | GATATC | 2 cut(s) | 666, 3061 |
| EcoT14I | CCWWGG | 3 cut(s) | 443, 1497, 2791 |
| EcoT22I | ATGCAT | 2 cut(s) | 654, 1315 |
| EcoT38I | GRGCYC | 2 cut(s) | 3457, 4512 |
| EgeI | GGCGCC | 1 cut(s) | 2575 |
| EheI | GGCGCC | 1 cut(s) | 2575 |
| ErhI | CCWWGG | 3 cut(s) | 443, 1497, 2791 |
| Esp3I | CGTCTC | 1 cut(s) | 968 |
| FaqI | GGGAC | 4 cut(s) | 453, 2457, 3830, 4304 |
| FauNDI | CATATG | 1 cut(s) | 3286 |
| FbaI | TGATCA | 1 cut(s) | 3738 |
| FblI | GTMKAC | 2 cut(s) | 834, 4321 |
| FriOI | GRGCYC | 2 cut(s) | 3457, 4512 |
| FspBI | CTAG | 9 cut(s) | 27, 777, 1413, 2252, 2870, 4473, 4899, 4913, 4940 |
| GlaI | GCGC | 5 cut(s) | 497, 2575, 4037, 4531, 4983 |
| GsaI | CCCAGC | 2 cut(s) | 150, 2732 |
| GsuI | CTGGAG | 4 cut(s) | 1571, 3857, 4223, 5124 |
| HaeII | RGCGCY | 5 cut(s) | 499, 2577, 4039, 4533, 4985 |
| HapII | CCGG | 2 cut(s) | 2292, 4344 |
| HgaI | GACGC | 1 cut(s) | 54 |
| HhaI | GCGC | 5 cut(s) | 498, 2576, 4038, 4532, 4984 |
| Hin1I | GRCGYC | 2 cut(s) | 65, 2574 |
| Hin6I | GCGC | 5 cut(s) | 496, 2574, 4036, 4530, 4982 |
| HinP1I | GCGC | 5 cut(s) | 496, 2574, 4036, 4530, 4982 |
| HincII | GTYRAC | 1 cut(s) | 4456 |
| HindII | GTYRAC | 1 cut(s) | 4456 |
| HindIII | AAGCTT | 6 cut(s) | 233, 240, 329, 1880, 3542, 4142 |
| HpaII | CCGG | 2 cut(s) | 2292, 4344 |
| Hpy99I | CGWCG | 3 cut(s) | 70, 82, 119 |
| HpyCH4IV | ACGT | 4 cut(s) | 114, 2375, 3230, 5170 |
| HpySE526I | ACGT | 4 cut(s) | 114, 2375, 3230, 5170 |
| Hsp92I | GRCGYC | 2 cut(s) | 65, 2574 |
| HspAI | GCGC | 5 cut(s) | 496, 2574, 4036, 4530, 4982 |
| KasI | GGCGCC | 1 cut(s) | 2573 |
| KflI | GGGWCCC | 1 cut(s) | 4291 |
| Kpn2I | TCCGGA | 1 cut(s) | 2291 |
| Ksp22I | TGATCA | 1 cut(s) | 3738 |
| LmnI | GCTCC | 9 cut(s) | 30, 421, 1590, 2015, 3356, 4373, 4520, 5105, 5130 |
| MabI | ACCWGGT | 1 cut(s) | 4776 |
| MaeI | CTAG | 9 cut(s) | 27, 777, 1413, 2252, 2870, 4473, 4899, 4913, 4940 |
| MaeII | ACGT | 4 cut(s) | 114, 2375, 3230, 5170 |
| MaeIII | GTNAC | 5 cut(s) | 391, 1325, 2095, 2527, 4657 |
| MfeI | CAATTG | 1 cut(s) | 2480 |
| MflI | RGATCY | 5 cut(s) | 220, 979, 1115, 1948, 2843 |
| MhlI | GDGCHC | 5 cut(s) | 2023, 2321, 3361, 3457, 4512 |
| MlsI | TGGCCA | 2 cut(s) | 3075, 3241 |
| MluNI | TGGCCA | 2 cut(s) | 3075, 3241 |
| Mly113I | GGCGCC | 1 cut(s) | 2574 |
| MlyI | GAGTC | 6 cut(s) | 528, 728, 2129, 2264, 2479, 4866 |
| MmeI | TCCRAC | 7 cut(s) | 248, 1025, 1509, 1747, 3100, 3504, 3965 |
| Mox20I | TGGCCA | 2 cut(s) | 3075, 3241 |
| Mph1103I | ATGCAT | 2 cut(s) | 654, 1315 |
| MroI | TCCGGA | 1 cut(s) | 2291 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2745, 3882 |
| MscI | TGGCCA | 2 cut(s) | 3075, 3241 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1000, 2893 |
| Msp20I | TGGCCA | 2 cut(s) | 3075, 3241 |
| MspA1I | CMGCKG | 3 cut(s) | 2261, 4052, 5012 |
| MspCI | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| MspI | CCGG | 2 cut(s) | 2292, 4344 |
| MspR9I | CCNGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| MunI | CAATTG | 1 cut(s) | 2480 |
| Mva1269I | GAATGC | 2 cut(s) | 2458, 4201 |
| MvaI | CCWGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| NarI | GGCGCC | 1 cut(s) | 2574 |
| NcoI | CCATGG | 2 cut(s) | 443, 1497 |
| NdeI | CATATG | 1 cut(s) | 3286 |
| NmeAIII | GCCGAG | 1 cut(s) | 3934 |
| NmuCI | GTSAC | 5 cut(s) | 391, 1325, 2095, 2527, 4657 |
| NsiI | ATGCAT | 2 cut(s) | 654, 1315 |
| NspI | RCATGY | 4 cut(s) | 767, 1685, 1727, 4802 |
| NspV | TTCGAA | 1 cut(s) | 4556 |
| PaeI | GCATGC | 1 cut(s) | 1685 |
| PaeR7I | CTCGAG | 1 cut(s) | 131 |
| PagI | TCATGA | 3 cut(s) | 370, 2242, 2695 |
| PaqCI | CACCTGC | 2 cut(s) | 649, 4867 |
| PasI | CCCWGGG | 1 cut(s) | 3172 |
| PciI | ACATGT | 1 cut(s) | 4798 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 74, 111 |
| PctI | GAATGC | 2 cut(s) | 2458, 4201 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2745, 3882 |
| PflFI | GACNNNGTC | 1 cut(s) | 4655 |
| PfoI | TCCNGGA | 1 cut(s) | 3063 |
| PleI | GAGTC | 6 cut(s) | 528, 728, 2129, 2263, 2478, 4866 |
| PluTI | GGCGCC | 1 cut(s) | 2577 |
| PmaCI | CACGTG | 1 cut(s) | 3231 |
| PmlI | CACGTG | 1 cut(s) | 3231 |
| PpsI | GAGTC | 6 cut(s) | 528, 728, 2129, 2263, 2478, 4866 |
| Ppu21I | YACGTR | 2 cut(s) | 3231, 5171 |
| PpuMI | RGGWCCY | 3 cut(s) | 2459, 3899, 4291 |
| PscI | ACATGT | 1 cut(s) | 4798 |
| PshBI | ATTAAT | 3 cut(s) | 1056, 3921, 4086 |
| PsiI | TTATAA | 1 cut(s) | 2645 |
| Psp124BI | GAGCTC | 1 cut(s) | 3457 |
| Psp5II | RGGWCCY | 3 cut(s) | 2459, 3899, 4291 |
| Psp6I | CCWGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| PspCI | CACGTG | 1 cut(s) | 3231 |
| PspFI | CCCAGC | 2 cut(s) | 146, 2728 |
| PspGI | CCWGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| PspPI | GGNCC | 9 cut(s) | 440, 1769, 1859, 2459, 2507, 3899, 4226, 4291, 4774 |
| PspPPI | RGGWCCY | 3 cut(s) | 2459, 3899, 4291 |
| PspXI | VCTCGAGB | 1 cut(s) | 131 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4599, 4631 |
| PstI | CTGCAG | 5 cut(s) | 955, 1618, 3859, 5011, 5017 |
| PstNI | CAGNNNCTG | 5 cut(s) | 737, 1216, 1844, 2264, 5006 |
| PsuI | RGATCY | 5 cut(s) | 220, 979, 1115, 1948, 2843 |
| PsyI | GACNNNGTC | 1 cut(s) | 4655 |
| PvuII | CAGCTG | 3 cut(s) | 2261, 4052, 5012 |
| RsaI | GTAC | 9 cut(s) | 1062, 1074, 1520, 2565, 3468, 3687, 3808, 4797, 5058 |
| RsaNI | GTAC | 9 cut(s) | 1061, 1073, 1519, 2564, 3467, 3686, 3807, 4796, 5057 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1000, 2893 |
| SacI | GAGCTC | 1 cut(s) | 3457 |
| Sau96I | GGNCC | 9 cut(s) | 440, 1769, 1859, 2459, 2507, 3899, 4226, 4291, 4774 |
| ScaI | AGTACT | 2 cut(s) | 1074, 2565 |
| SchI | GAGTC | 6 cut(s) | 528, 728, 2129, 2264, 2479, 4866 |
| ScrFI | CCNGG | 7 cut(s) | 2725, 3065, 3173, 3243, 3314, 3903, 4778 |
| SduI | GDGCHC | 5 cut(s) | 2023, 2321, 3361, 3457, 4512 |
| SexAI | ACCWGGT | 1 cut(s) | 4776 |
| SfcI | CTRYAG | 6 cut(s) | 951, 1614, 3855, 4179, 5007, 5013 |
| SfoI | GGCGCC | 1 cut(s) | 2575 |
| Sfr274I | CTCGAG | 1 cut(s) | 131 |
| SfuI | TTCGAA | 1 cut(s) | 4556 |
| SinI | GGWCC | 8 cut(s) | 440, 1769, 1859, 2459, 3899, 4226, 4291, 4774 |
| SlaI | CTCGAG | 1 cut(s) | 131 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1000, 2893 |
| SphI | GCATGC | 1 cut(s) | 1685 |
| SsiI | CCGC | 9 cut(s) | 62, 120, 258, 305, 602, 2634, 4105, 4584, 5128 |
| SspDI | GGCGCC | 1 cut(s) | 2573 |
| SspI | AATATT | 6 cut(s) | 827, 1513, 2060, 2824, 3222, 4084 |
| SspMI | CTAG | 9 cut(s) | 27, 777, 1413, 2252, 2870, 4473, 4899, 4913, 4940 |
| SstI | GAGCTC | 1 cut(s) | 3457 |
| StyD4I | CCNGG | 7 cut(s) | 2723, 3063, 3171, 3241, 3312, 3901, 4776 |
| StyI | CCWWGG | 3 cut(s) | 443, 1497, 2791 |
| TaiI | ACGT | 4 cut(s) | 117, 2378, 3233, 5173 |
| TaqII | GACCGA | 1 cut(s) | 480 |
| TatI | WGTACW | 6 cut(s) | 1060, 1072, 2563, 3466, 3685, 5056 |
| TauI | GCSGC | 4 cut(s) | 65, 604, 4107, 4586 |
| TscAI | CASTG | 9 cut(s) | 400, 820, 1165, 1681, 3816, 4491, 4660, 5159, 5167 |
| TseFI | GTSAC | 5 cut(s) | 391, 1325, 2095, 2527, 4657 |
| Tsp45I | GTSAC | 5 cut(s) | 391, 1325, 2095, 2527, 4657 |
| TspGWI | ACGGA | 4 cut(s) | 854, 992, 1974, 2515 |
| TspRI | CASTG | 9 cut(s) | 400, 820, 1165, 1681, 3816, 4491, 4660, 5159, 5167 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4655 |
| Vha464I | CTTAAG | 3 cut(s) | 2014, 3448, 4964 |
| VneI | GTGCAC | 1 cut(s) | 2317 |
| VpaK11BI | GGWCC | 8 cut(s) | 440, 1769, 1859, 2459, 3899, 4226, 4291, 4774 |
| VspI | ATTAAT | 3 cut(s) | 1056, 3921, 4086 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 266 |
| XapI | RAATTY | 8 cut(s) | 1090, 1202, 1619, 1976, 2882, 3046, 4308, 4499 |
| XbaI | TCTAGA | 3 cut(s) | 2251, 4912, 4939 |
| XceI | RCATGY | 4 cut(s) | 767, 1685, 1727, 4802 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2539 |
| XhoI | CTCGAG | 1 cut(s) | 131 |
| XmiI | GTMKAC | 2 cut(s) | 834, 4321 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2745, 3882 |
| XspI | CTAG | 9 cut(s) | 27, 777, 1413, 2252, 2870, 4473, 4899, 4913, 4940 |
| ZrmI | AGTACT | 2 cut(s) | 1074, 2565 |
| Zsp2I | ATGCAT | 2 cut(s) | 654, 1315 |