Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Reverse (-)

23745883 .. 23747274

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGTCACCAAGATTTATATTGTGTACTATTCCTTGCACGGCCACGTCGAGACAATGGCACGAGAGGTACTTCGGGGAGTAAACTCTGTTCCAGACGTGGAAGCAACACTTTGGCAAGTGCCAGAGACATTACCGGAGAAAATATTGGAGAAAGTGAAGGCCGTTCCAAGACCGGACGATGTGCCGGATATTCGACCAGAACAACTGGCGGAAGCCGACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTTTCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCAGGAATCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGACAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAAGTATGTACGAGATGGGAGAGGTGAAAGGTGGTTCGCCTTATGGCTCAGGGACTTATGCAGCTGATGGATCACGCGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACTTTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

207

Amino Acids

22.72

Weight (kDa)

6.3

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	7 - 148	1.6e-11	NADPH-dependent FMN reductase
Flavodoxin_1	PF00258	8 - 139	5.5e-07	Flavodoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccII	CGCG	1 cut(s)	531
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	532
AcoI	YGGCCR	1 cut(s)	43
AfaI	GTAC	6 cut(s)	29, 72, 352, 432, 464, 578
AgeI	ACCGGT	1 cut(s)	433
AjiI	CACGTC	2 cut(s)	49, 100
AluBI	AGCT	2 cut(s)	518, 544
AluI	AGCT	2 cut(s)	518, 544
Alw26I	GTCTC	3 cut(s)	47, 122, 618
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	3 cut(s)	43, 162, 370
ApeKI	GCWGC	1 cut(s)	515
AsiGI	ACCGGT	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	490
BauI	CACGAG	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	253, 463, 515
BceAI	ACGGC	3 cut(s)	58, 149, 408
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	3 cut(s)	47, 122, 618
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmcAI	AGTACT	1 cut(s)	578
BmgBI	CACGTC	2 cut(s)	49, 100
BmsI	GCATC	1 cut(s)	272
BpmI	CTGGAG	2 cut(s)	367, 566
Bpu10I	CCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	361, 568
BsaWI	WCCGGW	3 cut(s)	136, 175, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	213, 411
BseDI	CCNNGG	2 cut(s)	361, 568
BseGI	GGATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	213, 411
BseXI	GCAGC	1 cut(s)	527
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	45, 164, 372
BshTI	ACCGGT	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	137, 176, 188, 434
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	3 cut(s)	47, 122, 618
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	45, 164, 372
Bso31I	GGTCTC	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	298, 524
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	3 cut(s)	45, 164, 372
BspCNI	CTCAG	1 cut(s)	515
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	213, 411
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	361, 568
BssMI	GATC	2 cut(s)	298, 524
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	365, 612
BstC8I	GCNNGC	2 cut(s)	533, 558
BstDEI	CTNAG	1 cut(s)	502
BstDSI	CCRYGG	2 cut(s)	361, 568
BstF5I	GGATG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	2 cut(s)	301, 527
BstMAI	GTCTC	3 cut(s)	47, 122, 618
BstMBI	GATC	2 cut(s)	298, 524
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 541, 590
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	45, 164, 372
BtgI	CCRYGG	2 cut(s)	361, 568
BtrI	CACGTC	2 cut(s)	49, 100
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	533, 558
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	433
Csp6I	GTAC	6 cut(s)	28, 71, 351, 431, 463, 577
CspAI	ACCGGT	1 cut(s)	433
CviAII	CATG	3 cut(s)	229, 274, 569
CviQI	GTAC	6 cut(s)	28, 71, 351, 431, 463, 577
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	2 cut(s)	300, 526
DpnII	GATC	2 cut(s)	298, 524
EaeI	YGGCCR	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	568
Eco31I	GGTCTC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	3 cut(s)	232, 277, 572
FaiI	YATR	7 cut(s)	21, 230, 275, 461, 498, 513, 570
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	3 cut(s)	228, 273, 568
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	1 cut(s)	516
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	367, 566
HaeIII	GGCC	3 cut(s)	45, 164, 372
HapII	CCGG	4 cut(s)	137, 176, 188, 434
Hin1II	CATG	3 cut(s)	232, 277, 572
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	3 cut(s)	225, 339, 550
HpaII	CCGG	4 cut(s)	137, 176, 188, 434
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	28, 85, 390
Hpy188III	TCNNGA	6 cut(s)	52, 95, 274, 304, 346, 604
Hpy8I	GTNNAC	3 cut(s)	28, 85, 390
Hpy99I	CGWCG	2 cut(s)	53, 224
HpyAV	CCTTC	2 cut(s)	154, 252
HpyCH4III	ACNGT	2 cut(s)	365, 612
HpyCH4IV	ACGT	2 cut(s)	48, 99
HpyCH4V	TGCA	4 cut(s)	40, 335, 515, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 541, 590
HpyF3I	CTNAG	1 cut(s)	502
HpySE526I	ACGT	2 cut(s)	48, 99
Hsp92II	CATG	3 cut(s)	232, 277, 572
Kzo9I	GATC	2 cut(s)	298, 524
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	48, 99
MaeIII	GTNAC	2 cut(s)	7, 397
MalI	GATC	2 cut(s)	300, 526
MboI	GATC	2 cut(s)	298, 524
MboII	GAAGA	1 cut(s)	334
MluCI	AATT	1 cut(s)	562
MnlI	CCTC	3 cut(s)	61, 362, 469
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	137, 176, 188, 434
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	392, 541, 590
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	298, 524
NlaIII	CATG	3 cut(s)	232, 277, 572
NmuCI	GTSAC	2 cut(s)	7, 397
PagI	TCATGA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	225, 339, 550
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	323
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	6 cut(s)	29, 72, 352, 432, 464, 578
RsaNI	GTAC	6 cut(s)	28, 71, 351, 431, 463, 577
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	298, 524
SbfI	CCTGCAGG	1 cut(s)	337
ScaI	AGTACT	1 cut(s)	578
SdaI	CCTGCAGG	1 cut(s)	337
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse8387I	CCTGCAGG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	562
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	365, 612
TaiI	ACGT	2 cut(s)	51, 102
TaqI	TCGA	2 cut(s)	51, 196
TasI	AATT	1 cut(s)	562
TatI	WGTACW	2 cut(s)	27, 576
TfiI	GAWTC	3 cut(s)	225, 339, 550
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	7, 397
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	2 cut(s)	7, 397
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	402
XspI	CTAG	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.