Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000936.1

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1518

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000936.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

atggcaactaccaagatatacatagtgtactactctttacatggacatgtggagactatggcacgagaagtacagcgaggagttaatgcagtggaaggtgttgaaggaacactttggcagactatggcacgagaagtacagcgaggagttaatgcagtggaaggtgttgaaggaacactttggcaggtgcctgagacactttctgatgtaatattgcaaaagatgaaggcccctcctaaggcaaatgatgtgccagagataaggccagaacaacttgtgcaagctgatggttttctctttggatttccatcgcgttttggtgtgatgtcggctcaatgcaaggccttctttgacgccagtcatgaaatatgggaaacacaagcacttgccggcaaacctgctggaatcttctggagtactggatttcatgggggaggccaggagcttactgcattaacggcagtaacacagttggcacatcatggcatgatatttgtccctcttgggtacacatttggaaagggaatgtatgaaatgaacgaggtgaagggtggctcttcttatggtgctggaacatttgcagcagatggatctcgtcaaccaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

202

Amino Acids

21.92

Weight (kDa)

5.66

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	2 cut(s)	175, 406
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	313
AclWI	GGATC	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	5 cut(s)	29, 72, 138, 418, 509
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	104, 170
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	2 cut(s)	284, 445
AluI	AGCT	2 cut(s)	284, 445
Alw26I	GTCTC	2 cut(s)	47, 188
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	4 cut(s)	228, 263, 342, 436
ApeKI	GCWGC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	187
BauI	CACGAG	2 cut(s)	63, 129
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	3 cut(s)	281, 316, 581
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	47, 188
BfuAI	ACCTGC	2 cut(s)	175, 406
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	189, 231
BmrFI	CCNGG	1 cut(s)	440
BoxI	GACNNNNGTC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	357, 424
Bse21I	CCTNAGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	440
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	357, 424
BseRI	GAGGAG	2 cut(s)	93, 159
BseXI	GCAGC	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	4 cut(s)	230, 265, 344, 438
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	47, 188
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	4 cut(s)	230, 265, 344, 438
Bsp143I	GATC	1 cut(s)	590
BspANI	GGCC	4 cut(s)	230, 265, 344, 438
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	189, 231
BspMI	ACCTGC	2 cut(s)	175, 406
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	357, 424
BssAI	RCCGGY	1 cut(s)	389
BssMI	GATC	1 cut(s)	590
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	2 cut(s)	63, 129
Bst2BI	CACGAG	2 cut(s)	63, 129
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	1 cut(s)	562
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	282, 391
BstDEI	CTNAG	2 cut(s)	192, 237
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	2 cut(s)	47, 188
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	230, 265, 344, 438
BtgZI	GCGATG	1 cut(s)	294
BtsI	GCAGTG	2 cut(s)	96, 162
BtsIMutI	CAGTG	2 cut(s)	96, 162
BveI	ACCTGC	2 cut(s)	175, 406
Cac8I	GCNNGC	2 cut(s)	282, 391
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	5 cut(s)	28, 71, 137, 417, 508
CviAII	CATG	6 cut(s)	41, 47, 362, 428, 482, 487
CviJI	RGCY	8 cut(s)	230, 265, 284, 332, 344, 438, 445, 555
CviKI_1	RGCY	8 cut(s)	230, 265, 284, 332, 344, 438, 445, 555
CviQI	GTAC	5 cut(s)	28, 71, 137, 417, 508
DdeI	CTNAG	2 cut(s)	192, 237
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	438
FaeI	CATG	6 cut(s)	44, 50, 365, 431, 485, 490
FalI	AAGNNNNNCTT	6 cut(s)	96, 128, 162, 194, 332, 364
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	6 cut(s)	40, 46, 361, 427, 481, 486
Fnu4HI	GCNGC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	582
GluI	GCNGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	230, 265, 344, 438
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	6 cut(s)	44, 50, 365, 431, 485, 490
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HinfI	GANTC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	3 cut(s)	28, 510, 599
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	362, 412
Hpy8I	GTNNAC	3 cut(s)	28, 510, 599
HpyAV	CCTTC	7 cut(s)	89, 98, 155, 164, 220, 355, 541
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4V	TGCA	7 cut(s)	89, 155, 217, 280, 339, 452, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	192, 237
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	44, 50, 365, 431, 485, 490
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	590
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	2 cut(s)	400, 549
MflI	RGATCY	1 cut(s)	590
MnlI	CCTC	6 cut(s)	71, 137, 243, 428, 510, 535
MroNI	GCCGGC	1 cut(s)	389
MseI	TTAA	3 cut(s)	84, 150, 455
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	458
NaeI	GCCGGC	1 cut(s)	391
NdeII	GATC	1 cut(s)	590
NgoMIV	GCCGGC	1 cut(s)	389
NlaIII	CATG	6 cut(s)	44, 50, 365, 431, 485, 490
NlaIV	GGNNCC	2 cut(s)	189, 231
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	344
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	562
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	583
PscI	ACATGT	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	189, 231
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	5 cut(s)	29, 72, 138, 418, 509
RsaNI	GTAC	5 cut(s)	28, 71, 137, 417, 508
RseI	CAYNNNNRTG	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	84, 150, 455
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	440
SetI	ASST	7 cut(s)	100, 166, 189, 286, 400, 447, 546
SmiMI	CAYNNNNRTG	1 cut(s)	45
SseBI	AGGCCT	1 cut(s)	344
SspI	AATATT	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	471
TatI	WGTACW	4 cut(s)	27, 70, 136, 416
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	3 cut(s)	84, 150, 455
Tru9I	TTAA	3 cut(s)	84, 150, 455
TscAI	CASTG	2 cut(s)	96, 162
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	5 cut(s)	239, 378, 416, 546, 551
TspRI	CASTG	2 cut(s)	96, 162
XceI	RCATGY	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.