Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Reverse (-)

32780904 .. 32783148

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38360.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCATAATAGTTGGAATTCACATATCAGGATCAAACTCCTACCTCAGTCTACAGCTATGGCTACTACTAAGATATACATAGTGTACTACTCTTTACATGGACATGTAGAGACTATGGCACGTGAAGTACAGCGAGGGGTGAACGCAGTTGAAGGTGTTGAAGGAACACTTTGGCAGGTTCCTGAGACACTTTCTGATGTAATATTGCAAAAGATGAAGGCCCTTCCTAAGGCAGATGATGTGCCAGAGATAAGGCCAGAACAACTTTTGGAAGCTGATGGTTTTCTCTTTGGATTTCCATCGCGTTTTGGTGTGATGTCAGCTCAATGCAAGGCCTTCTTTGATTCCACTCATGAAATATGGGAAACACAAGCACTTGCCGGCAAACCTGCTGGAATCTTCTGGAGTACTGGATTTCATGGGGGAGGCCAGGAGCTTACTGCATTAACAGCAGTAACACAGTTGGCACATCATGGCATGATATTTGTCCCTCTTGGTTACACATTTGGAAAAGGTATGTATGAAATGAACGAGGTAAAGGGTGGCTCTTCTTATGGTGCTGGAACATTTGCAGCAGATGGATCTCGTCAACCAACAGAACTGGAACTACAACAAGCCTTTTACCAGGGTAAATACTTAGCTGGTTTTGCAAAGAAGCTCAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

223

Amino Acids

24.45

Weight (kDa)

6.44

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	19 - 110	1.2e-10	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	166, 397
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	304
AclWI	GGATC	2 cut(s)	38, 589
AcsI	RAATTY	1 cut(s)	16
AcvI	CACGTG	1 cut(s)	122
AfaI	GTAC	3 cut(s)	86, 129, 409
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	152, 161
AjnI	CCWGG	2 cut(s)	429, 624
AluBI	AGCT	6 cut(s)	56, 275, 323, 436, 641, 658
AluI	AGCT	6 cut(s)	56, 275, 323, 436, 641, 658
Alw26I	GTCTC	2 cut(s)	104, 179
AlwI	GGATC	2 cut(s)	38, 589
AoxI	GGCC	4 cut(s)	219, 254, 333, 427
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	3 cut(s)	272, 307, 572
BciT130I	CCWGG	2 cut(s)	431, 626
BcoDI	GTCTC	2 cut(s)	104, 179
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	2 cut(s)	166, 397
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	2 cut(s)	431, 626
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	431, 626
BpmI	CTGGAG	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	415, 606
Bse21I	CCTNAGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	431, 626
BseDI	CCNNGG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	59, 174
BseNI	ACTGG	2 cut(s)	415, 606
BseXI	GCAGC	1 cut(s)	584
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	4 cut(s)	221, 256, 335, 429
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	104, 179
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	221, 256, 335, 429
Bsp143I	GATC	2 cut(s)	30, 581
BspANI	GGCC	4 cut(s)	221, 256, 335, 429
BspCNI	CTCAG	2 cut(s)	58, 175
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	2 cut(s)	166, 397
BspPI	GGATC	2 cut(s)	38, 589
BspQI	GCTCTTC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	415, 606
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	2 cut(s)	30, 581
Bst2UI	CCWGG	2 cut(s)	431, 626
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	5 cut(s)	45, 69, 183, 228, 637
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	33, 584
BstMAI	GTCTC	2 cut(s)	104, 179
BstMBI	GATC	2 cut(s)	30, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 647
BstNI	CCWGG	2 cut(s)	431, 626
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	429, 624
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	221, 256, 335, 429
BtgZI	GCGATG	1 cut(s)	285
BveI	ACCTGC	2 cut(s)	166, 397
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	85, 128, 408
CviAII	CATG	6 cut(s)	98, 104, 353, 419, 473, 478
CviQI	GTAC	3 cut(s)	85, 128, 408
DdeI	CTNAG	5 cut(s)	45, 69, 183, 228, 637
DpnI	GATC	2 cut(s)	32, 583
DpnII	GATC	2 cut(s)	30, 581
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco147I	AGGCCT	1 cut(s)	335
Eco72I	CACGTG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	429, 624
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	6 cut(s)	101, 107, 356, 422, 476, 481
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 323, 355
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	6 cut(s)	97, 103, 352, 418, 472, 477
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	573
GluI	GCNGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	4 cut(s)	221, 256, 335, 429
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	6 cut(s)	101, 107, 356, 422, 476, 481
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HinfI	GANTC	2 cut(s)	344, 396
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	51, 85, 142, 590
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	28, 182, 353, 403
Hpy8I	GTNNAC	4 cut(s)	51, 85, 142, 590
HpyAV	CCTTC	5 cut(s)	146, 155, 211, 233, 346
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	4, 208, 330, 443, 572, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 647
HpyF3I	CTNAG	5 cut(s)	45, 69, 183, 228, 637
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	101, 107, 356, 422, 476, 481
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	30, 581
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	584
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	454, 497
MalI	GATC	2 cut(s)	32, 583
MboI	GATC	2 cut(s)	30, 581
MboII	GAAGA	2 cut(s)	391, 540
MflI	RGATCY	1 cut(s)	581
MluCI	AATT	1 cut(s)	16
MnlI	CCTC	5 cut(s)	54, 128, 419, 501, 526
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	431, 626
MvaI	CCWGG	2 cut(s)	431, 626
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	449, 647
NaeI	GCCGGC	1 cut(s)	382
NdeII	GATC	2 cut(s)	30, 581
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	6 cut(s)	101, 107, 356, 422, 476, 481
NlaIV	GGNNCC	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	553
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	344, 396
PkrI	GCNGC	1 cut(s)	574
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	429, 624
PspCI	CACGTG	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	429, 624
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	3 cut(s)	86, 129, 409
RsaNI	GTAC	3 cut(s)	85, 128, 408
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	2 cut(s)	30, 581
Sau96I	GGNCC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	431, 626
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	335
SspI	AATATT	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	429, 624
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	1 cut(s)	124
TasI	AATT	1 cut(s)	16
TatI	WGTACW	3 cut(s)	84, 127, 407
TfiI	GAWTC	2 cut(s)	344, 396
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	5 cut(s)	230, 369, 407, 537, 542
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.