Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Reverse (-)

75043659 .. 75044952

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG470800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTACCACCAAGATATACATAGTGTACTACTCTTTACATGGACATGTGGAGACTATGGCACGAGAAGTACAGCGAGGAGTTAATGCAGTGGAAGGTGTTGAAGGAACACTTTGGCAGGTGCCTGAGACACTTTCTGATGTAATATTGCAAAAGATGAAGGCCCCTCCTAAGGCAAATGATGTGCCAGAGATAAGGCCAGAACAACTTGTGGAAGCGGATGGTTTTCTCTTTGGATTTCCATCGCGTTTTGGTGTGATGTCGGCTCAATGCAAGGCCTTCTTTGACGCCAGTCATGAAATATGGGAAACACAAGCACTTGCCGGCAAACCTGCTGGAATCTTCTGGAGTACTGGATTTCATGGGGGAGGCCAGGAGCTTACTGCATTAACGGCAGTAACACAGTTGGCACATCATGGCATGATATTTGTCCCTCTTGGGTACACATTTGGAAAGGGAATGTATGAAATGAACGAGGTGAAGGGTGGCTCTTCTTATGGTGCTGGAACATTTGCAGCAGATGGATCTCGTCAACCAACAGAACTGGAACTACAACAAGCCTTTTACCAGGGTAAATACGTGGCTGGAATTGCAAAGAAGCTTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

203

Amino Acids

22.13

Weight (kDa)

6.07

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	8 - 147	3.1e-12	NADPH-dependent FMN reductase
Flavodoxin_1	PF00258	8 - 139	1.3e-06	Flavodoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	109, 340
AccB1I	GGYRCC	1 cut(s)	121
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	4 cut(s)	29, 72, 352, 443
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	372, 567
AluBI	AGCT	2 cut(s)	379, 601
AluI	AGCT	2 cut(s)	379, 601
Alw26I	GTCTC	2 cut(s)	47, 122
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	4 cut(s)	162, 197, 276, 370
ApeKI	GCWGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	215, 250, 515
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	374, 569
BcoDI	GTCTC	2 cut(s)	47, 122
BfuAI	ACCTGC	2 cut(s)	109, 340
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	374, 569
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	123, 165
BmrFI	CCNGG	2 cut(s)	374, 569
BoxI	GACNNNNGTC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	291, 358, 549
Bse21I	CCTNAGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	374, 569
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	291, 358, 549
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	164, 199, 278, 372
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	47, 122
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	164, 199, 278, 372
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	4 cut(s)	164, 199, 278, 372
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	123, 165
BspMI	ACCTGC	2 cut(s)	109, 340
BspPI	GGATC	1 cut(s)	532
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	291, 358, 549
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	1 cut(s)	524
BssNI	GRCGYC	1 cut(s)	288
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	374, 569
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	126, 171
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	527
BstMAI	GTCTC	2 cut(s)	47, 122
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 590
BstNI	CCWGG	2 cut(s)	374, 569
BstNSI	RCATGY	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	372, 567
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	4 cut(s)	164, 199, 278, 372
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	2 cut(s)	109, 340
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	28, 71, 351, 442
CviAII	CATG	6 cut(s)	41, 47, 296, 362, 416, 421
CviQI	GTAC	4 cut(s)	28, 71, 351, 442
DdeI	CTNAG	2 cut(s)	126, 171
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	372, 567
FaeI	CATG	6 cut(s)	44, 50, 299, 365, 419, 424
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 266, 298
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	6 cut(s)	40, 46, 295, 361, 415, 420
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	164, 199, 278, 372
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	44, 50, 299, 365, 419, 424
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	28, 444, 533
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	296, 346
Hpy8I	GTNNAC	3 cut(s)	28, 444, 533
HpyAV	CCTTC	5 cut(s)	89, 98, 154, 289, 475
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	89, 151, 273, 386, 515, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 590
HpyF3I	CTNAG	2 cut(s)	126, 171
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	44, 50, 299, 365, 419, 424
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	524
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	527
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	2 cut(s)	334, 483
MflI	RGATCY	1 cut(s)	524
MluCI	AATT	2 cut(s)	588, 607
MnlI	CCTC	5 cut(s)	71, 177, 362, 444, 469
MroNI	GCCGGC	1 cut(s)	323
MseI	TTAA	4 cut(s)	84, 389, 603, 610
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	374, 569
MvaI	CCWGG	2 cut(s)	374, 569
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	392, 590
NaeI	GCCGGC	1 cut(s)	325
NdeII	GATC	1 cut(s)	524
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	6 cut(s)	44, 50, 299, 365, 419, 424
NlaIV	GGNNCC	2 cut(s)	123, 165
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	278
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	496
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	580
PscI	ACATGT	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	372, 567
PspGI	CCWGG	2 cut(s)	372, 567
PspN4I	GGNNCC	2 cut(s)	123, 165
PspPI	GGNCC	1 cut(s)	163
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	4 cut(s)	29, 72, 352, 443
RsaNI	GTAC	4 cut(s)	28, 71, 351, 442
RseI	CAYNNNNRTG	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	4 cut(s)	84, 389, 603, 610
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	374, 569
SetI	ASST	7 cut(s)	100, 123, 334, 381, 480, 582, 603
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	588, 607
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	372, 567
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	582
TasI	AATT	2 cut(s)	588, 607
TatI	WGTACW	3 cut(s)	27, 70, 350
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	84, 389, 603, 610
Tru9I	TTAA	4 cut(s)	84, 389, 603, 610
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	5 cut(s)	173, 312, 350, 480, 485
TspRI	CASTG	1 cut(s)	96
XceI	RCATGY	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.