Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Reverse (-)

36310797 .. 36316963

Gene Structure 6167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG347900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAACTACCAAGATATACATAGTGTACTACTCTTTACATGGACATGTGGAGACTATGGCACGAGAAGTACAGCGAGGAGTTAATGCAGTGGAAGGTGTTGAAGGAACACTTTGGCAGGTGCCTGAGACACTTCCTGATGTAATATTGCAAAAGATGAAGGCCCCTCCTGCAAATGATGTGCCAGAGATAAGGCCAGAACAACTTGTGGAAGCTGATGGTTTTCTCTTTGGATTTCCATCGCGTTTTGGTGTGATGTCAGCTCAATGCAAGGCCTTCTTTGATGCCAGTCATGAAATATGGGAAACACAAGCACTTGCCGGCAAACCTGCTGGAATCTTCTGGAGTACTGGATTTCATGGGGGAGGCCAGGAGCTTACTGCATTAACAGCAGTAACACAGTTGGCACATCATGGCATGATATTTGTCCCTCTTGGGTACACATTTGGAAAGGGCATGTATGAAATGAACGAGGTGAAGGGTGGCTCTTCTTATGGTGCTGGAACATTTGCAGCAGATGGATCTCGTCAACCAACAGAGCTGGAACTACAACAAGCCTTTTACCAGGGTAAATACGTGGCTGGAATTGCAAAGAAGCTTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

202

Amino Acids

22.01

Weight (kDa)

5.86

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	7 - 146	1.6e-12	NADPH-dependent FMN reductase
Flavodoxin_1	PF00258	8 - 138	1.6e-06	Flavodoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	109, 337
AccB1I	GGYRCC	1 cut(s)	121
AccII	CGCG	1 cut(s)	244
AclWI	GGATC	1 cut(s)	529
AfaI	GTAC	4 cut(s)	29, 72, 349, 440
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	369, 564
AluBI	AGCT	5 cut(s)	215, 263, 376, 541, 598
AluI	AGCT	5 cut(s)	215, 263, 376, 541, 598
Alw26I	GTCTC	2 cut(s)	47, 122
AlwI	GGATC	1 cut(s)	529
AoxI	GGCC	4 cut(s)	162, 194, 273, 367
ApeKI	GCWGC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	3 cut(s)	212, 247, 512
BciT130I	CCWGG	2 cut(s)	371, 566
BcoDI	GTCTC	2 cut(s)	47, 122
BfuAI	ACCTGC	2 cut(s)	109, 337
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	371, 566
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	123, 165
BmrFI	CCNGG	2 cut(s)	371, 566
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	288, 355
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	371, 566
BseDI	CCNNGG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	288, 355
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	4 cut(s)	164, 196, 275, 369
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	47, 122
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	164, 196, 275, 369
Bsp143I	GATC	1 cut(s)	521
BspANI	GGCC	4 cut(s)	164, 196, 275, 369
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	123, 165
BspMI	ACCTGC	2 cut(s)	109, 337
BspPI	GGATC	1 cut(s)	529
BspQI	GCTCTTC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	288, 355
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	371, 566
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	524
BstMAI	GTCTC	2 cut(s)	47, 122
BstMBI	GATC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 389, 587
BstNI	CCWGG	2 cut(s)	371, 566
BstNSI	RCATGY	2 cut(s)	50, 460
BstSCI	CCNGG	2 cut(s)	369, 564
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	164, 196, 275, 369
BtgZI	GCGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	2 cut(s)	109, 337
Cac8I	GCNNGC	1 cut(s)	322
CciI	TCATGA	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	28, 71, 348, 439
CviAII	CATG	7 cut(s)	41, 47, 293, 359, 413, 418, 457
CviQI	GTAC	4 cut(s)	28, 71, 348, 439
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	523
DpnII	GATC	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	369, 564
FaeI	CATG	7 cut(s)	44, 50, 296, 362, 416, 421, 460
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 263, 295
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	7 cut(s)	40, 46, 292, 358, 412, 417, 456
Fnu4HI	GCNGC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	4 cut(s)	164, 196, 275, 369
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	7 cut(s)	44, 50, 296, 362, 416, 421, 460
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	3 cut(s)	28, 441, 530
Hpy188III	TCNNGA	3 cut(s)	137, 293, 343
Hpy8I	GTNNAC	3 cut(s)	28, 441, 530
HpyAV	CCTTC	5 cut(s)	89, 98, 154, 286, 472
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	7 cut(s)	89, 151, 173, 270, 383, 512, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 389, 587
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	7 cut(s)	44, 50, 296, 362, 416, 421, 460
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	521
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	523
MboI	GATC	1 cut(s)	521
MboII	GAAGA	2 cut(s)	331, 480
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	2 cut(s)	585, 604
MnlI	CCTC	5 cut(s)	71, 177, 359, 441, 466
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	4 cut(s)	84, 386, 600, 607
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	371, 566
MvaI	CCWGG	2 cut(s)	371, 566
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	170, 389, 587
NaeI	GCCGGC	1 cut(s)	322
NdeII	GATC	1 cut(s)	521
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	7 cut(s)	44, 50, 296, 362, 416, 421, 460
NlaIV	GGNNCC	2 cut(s)	123, 165
NspI	RCATGY	2 cut(s)	50, 460
PagI	TCATGA	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	577
PscI	ACATGT	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	369, 564
PspGI	CCWGG	2 cut(s)	369, 564
PspN4I	GGNNCC	2 cut(s)	123, 165
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	521
RsaI	GTAC	4 cut(s)	29, 72, 349, 440
RsaNI	GTAC	4 cut(s)	28, 71, 348, 439
RseI	CAYNNNNRTG	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	4 cut(s)	84, 386, 600, 607
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	1 cut(s)	521
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	371, 566
SfaNI	GCATC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	585, 604
SseBI	AGGCCT	1 cut(s)	275
SspI	AATATT	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	369, 564
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	579
TasI	AATT	2 cut(s)	585, 604
TatI	WGTACW	3 cut(s)	27, 70, 347
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	4 cut(s)	84, 386, 600, 607
Tru9I	TTAA	4 cut(s)	84, 386, 600, 607
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	173, 309, 347, 477, 482
TspRI	CASTG	1 cut(s)	96
XceI	RCATGY	2 cut(s)	50, 460
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.