Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Forward (+)

4627103 .. 4628023

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTACTACGAAGATATACATCGTGTACTACTCCTTGCATGGACATGTAGAGATTATGGCACGTGAAATACATCGTGGAGTTAATTCGGTTGAAGGTGTTGAAGCAACACTTTGGCAGGTGCCCGAGACGCTCTCCAGTGTCATACTGCAAAAGGTGAAGGCCCCTCCTAAGGCAGATGATGTGCCGGAAATAAGGCCAGAGCAGCTTGTGGAAGCTGATGGCTTCCTCTTTGGCTCACCTTCTCGTTTTGGTGTGATGGCATCACAGTTCAAGGCCTTCTTTGATGCCACCGACGAGATATGGAAAAAGCAAGCACTTGCTGGCAAACCTGCTGGAATCTTCTGGAGTACTGGATTTCATGGCGGAGGGCAGGAGCTTACCGCATTAACAGCCGTAACACAGTTGGCACATCATGGCATGATTTTTGTGCCTCTTGGGTACACCTTCGGGAGCGGCATGTTTGAGATGGATGCTGTAAAGGGTGGATCAGCCTATGGCTCTGGAACTTTTGCCGCAGATGGATCACGTCAACCAACAGAGCTAGAACTCCAGCAGGCATTTTACCAGGGTAAATATGTGGCTCAAATTGCAAAGAAACTCAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

204

Amino Acids

22.09

Weight (kDa)

6.3

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	109, 340
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	456
AciI	CCGC	4 cut(s)	366, 384, 456, 516
AclWI	GGATC	2 cut(s)	496, 532
AcvI	CACGTG	1 cut(s)	65
AfaI	GTAC	3 cut(s)	29, 352, 443
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	95, 104, 274
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	4 cut(s)	208, 218, 379, 544
AluI	AGCT	4 cut(s)	208, 218, 379, 544
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	496, 532
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	162, 197, 276
ApeKI	GCWGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	169, 231
AvaI	CYCGRG	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	121
BbrPI	CACGTG	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	4 cut(s)	215, 253, 463, 515
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	545
BfuAI	ACCTGC	2 cut(s)	109, 340
BisI	GCNGC	3 cut(s)	206, 457, 516
BlsI	GCNGC	3 cut(s)	207, 458, 517
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	123, 165
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	3 cut(s)	272, 277, 463
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	3 cut(s)	121, 367, 536
BsaAI	YACGTR	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	138, 358
Bse21I	CCTNAGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	138, 358
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	3 cut(s)	164, 199, 278
BshNI	GGYRCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	164, 199, 278
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	488, 524
BspACI	CCGC	4 cut(s)	366, 384, 456, 516
BspANI	GGCC	3 cut(s)	164, 199, 278
BspLI	GGNNCC	2 cut(s)	123, 165
BspMI	ACCTGC	2 cut(s)	109, 340
BspPI	GGATC	2 cut(s)	496, 532
BspT107I	GGYRCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	138, 358
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	488, 524
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	270, 405
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	315, 325, 558
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	491, 527
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	488, 524
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 205, 392, 590
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	50, 463
BstSCI	CCNGG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	164, 199, 278
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	2 cut(s)	109, 340
Cac8I	GCNNGC	3 cut(s)	315, 325, 558
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	28, 351, 442
CviAII	CATG	6 cut(s)	41, 47, 362, 416, 421, 460
CviQI	GTAC	3 cut(s)	28, 351, 442
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	490, 526
DpnII	GATC	2 cut(s)	488, 524
EciI	GGCGGA	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	278
Eco72I	CACGTG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	6 cut(s)	44, 50, 365, 419, 424, 463
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 266, 298
FatI	CATG	6 cut(s)	40, 46, 361, 415, 420, 459
Fnu4HI	GCNGC	3 cut(s)	206, 457, 516
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	206, 457, 516
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	3 cut(s)	206, 457, 516
GsuI	CTGGAG	3 cut(s)	121, 367, 536
HaeIII	GGCC	3 cut(s)	164, 199, 278
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	139
Hin1II	CATG	6 cut(s)	44, 50, 365, 419, 424, 463
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	169, 231
Hpy166II	GTNNAC	3 cut(s)	28, 444, 533
Hpy188III	TCNNGA	3 cut(s)	346, 451, 504
Hpy8I	GTNNAC	3 cut(s)	28, 444, 533
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	5 cut(s)	89, 154, 252, 289, 457
HpyCH4III	ACNGT	2 cut(s)	270, 405
HpyCH4IV	ACGT	2 cut(s)	64, 529
HpyCH4V	TGCA	3 cut(s)	40, 151, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 205, 392, 590
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	64, 529
Hsp92II	CATG	6 cut(s)	44, 50, 365, 419, 424, 463
Kzo9I	GATC	2 cut(s)	488, 524
LmnI	GCTCC	2 cut(s)	376, 453
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	272, 277, 463
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	64, 529
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	490, 526
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	2 cut(s)	488, 524
MboII	GAAGA	2 cut(s)	25, 334
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	85, 588, 607
MnlI	CCTC	4 cut(s)	177, 239, 362, 444
MseI	TTAA	3 cut(s)	84, 389, 610
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	4 cut(s)	130, 205, 392, 590
NdeII	GATC	2 cut(s)	488, 524
NlaIII	CATG	6 cut(s)	44, 50, 365, 419, 424, 463
NlaIV	GGNNCC	2 cut(s)	123, 165
NspI	RCATGY	2 cut(s)	50, 463
PaqCI	CACCTGC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	278
PciI	ACATGT	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	207, 458, 517
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	567
PspCI	CACGTG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	123, 165
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	3 cut(s)	29, 352, 443
RsaNI	GTAC	3 cut(s)	28, 351, 442
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	84, 389, 610
SatI	GCNGC	3 cut(s)	206, 457, 516
Sau3AI	GATC	2 cut(s)	488, 524
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	3 cut(s)	272, 277, 463
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	3 cut(s)	85, 588, 607
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	4 cut(s)	366, 384, 456, 516
SspMI	CTAG	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	270, 405
TaiI	ACGT	2 cut(s)	67, 532
TasI	AATT	3 cut(s)	85, 588, 607
TatI	WGTACW	2 cut(s)	27, 350
TauI	GCSGC	2 cut(s)	459, 518
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	3 cut(s)	84, 389, 610
Tru9I	TTAA	3 cut(s)	84, 389, 610
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	145
XceI	RCATGY	2 cut(s)	50, 463
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.