Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004397

Physical Location & Seq

Genomic Coordinates Forward (+)

4112986 .. 4114699

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTACCACCAAGATATACGTAGTGTACTACTCCTTACATGGACATGTCGAGACTATGGCACGCGAAGTACAGCGCGGTGTTAATGCAGTTGAAGGTGTTGAAGCAACACTTTGGCAGGTACCTGAGACACTTCCCAGTATCATTCTGCAGAAGGTGAAGGCCCCTCCCAAGGCAGATGATGTGCCGGAAATAAGGCCTGAGCAACTTGTGGAAGCTGATGGTTTCCTCTTCGGGTTTCCTTCTCGTTTTGGTGTGATGGCAGCGCAGTTCAAGGCCTTCTTTGATGCCACTCATGAGATATGGGAAAAGCAAGCACTTGCTGGCAAACCTGCTGGGATCTTCTGGAGTACTGGATTTCATGGGGGAGGGCAGGAGCTCACTGCATTAACCGCCGTAACACAATTGGCACATCATGGCATGATATTTGTCCCTCTTGGCTACACATTTGGAAGTGGCATGTTTGAAATGAGTGAGGTGAAGGGTGGATCGTCTTATGGCTCTGGAACTTTTGCAGCAGATGGATCTCGTCAACCGACGGAGATAGAACTCCAACAGGCATTTTACCAGGGTAAATATGTGGCTCAATTTGCAAAGAAGCTCAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009987 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0022900 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

204

Amino Acids

22.17

Weight (kDa)

6.07

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58800 AT5G58800
fragaria_vesca	FvH4_1g14220 FvH4_3g38360 FvH4_3g38360 FvH4_3g38360
malus_domestica	MD03G1072400.v1.1
prunus_persica	Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1 Prupe.6G059300_v2.0.a1
pyrus_communis	pycom03g05860
rosa_chinensis	RchiOBHm_Chr2g0157081 RchiOBHm_Chr5g0068941 RchiOBHm_Chr5g0068961
rosa_laevigata	RLG00000036025
rosa_multiflora	Rmu_sc0000936.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011760
rosa_rugosa	Rorug05G0395100.1 Rorug07G0214400.1
rosa_samantha	Rh2BG537400 Rh2DG546200 Rh5AG451700 Rh5AG451900 Rh5BG470800 Rh5CG493200 Rh5DG483600 Rh7BG347900 Rh7DG336400
rosa_wichuraiana	Rw2G031020 Rw2G043240 Rw5G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	109, 340
Acc65I	GGTACC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	121
AccII	CGCG	2 cut(s)	66, 78
AciI	CCGC	2 cut(s)	78, 393
AclWI	GGATC	3 cut(s)	347, 496, 532
AfaI	GTAC	4 cut(s)	29, 72, 123, 352
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	95, 104, 274, 467
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	4 cut(s)	218, 379, 601, 609
AluI	AGCT	4 cut(s)	218, 379, 601, 609
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	47, 122
AlwI	GGATC	3 cut(s)	347, 496, 532
AoxI	GGCC	3 cut(s)	162, 197, 276
ApeKI	GCWGC	2 cut(s)	263, 515
Asp718I	GGTACC	1 cut(s)	121
AspLEI	GCGC	2 cut(s)	78, 268
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	169, 490
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	275, 527
BccI	CCATC	3 cut(s)	215, 253, 515
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	47, 122
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	2 cut(s)	109, 340
BisI	GCNGC	2 cut(s)	264, 516
BlsI	GCNGC	2 cut(s)	265, 517
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	123, 165
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	171, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	138, 358
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	171, 568
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	117, 192
BseNI	ACTGG	2 cut(s)	138, 358
BseXI	GCAGC	2 cut(s)	275, 527
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	66, 78
BshFI	GGCC	3 cut(s)	164, 199, 278
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	47, 122
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	164, 199, 278
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	339, 488, 524
BspACI	CCGC	2 cut(s)	78, 393
BspANI	GGCC	3 cut(s)	164, 199, 278
BspCNI	CTCAG	2 cut(s)	118, 193
BspFNI	CGCG	2 cut(s)	66, 78
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	123, 165
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	2 cut(s)	109, 340
BspPI	GGATC	3 cut(s)	347, 496, 532
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	138, 358
BssECI	CCNNGG	2 cut(s)	171, 568
BssMI	GATC	3 cut(s)	339, 488, 524
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	64, 315, 325
BstDEI	CTNAG	2 cut(s)	126, 201
BstFNI	CGCG	2 cut(s)	66, 78
BstHHI	GCGC	2 cut(s)	78, 268
BstKTI	GATC	3 cut(s)	342, 491, 527
BstMAI	GTCTC	2 cut(s)	47, 122
BstMBI	GATC	3 cut(s)	339, 488, 524
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 590
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	50, 463
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	22
BstUI	CGCG	2 cut(s)	66, 78
BstV1I	GCAGC	2 cut(s)	275, 527
BstX2I	RGATCY	2 cut(s)	339, 524
BstYI	RGATCY	2 cut(s)	339, 524
BsuRI	GGCC	3 cut(s)	164, 199, 278
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	2 cut(s)	109, 340
Cac8I	GCNNGC	3 cut(s)	64, 315, 325
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	2 cut(s)	78, 268
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	28, 71, 122, 351
CviAII	CATG	7 cut(s)	41, 47, 296, 362, 416, 421, 460
CviQI	GTAC	4 cut(s)	28, 71, 122, 351
DdeI	CTNAG	2 cut(s)	126, 201
DpnI	GATC	3 cut(s)	341, 490, 526
DpnII	GATC	3 cut(s)	339, 488, 524
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	379
Eco105I	TACGTA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	2 cut(s)	199, 278
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	7 cut(s)	44, 50, 299, 365, 419, 424, 463
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 266, 298
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	40, 46, 295, 361, 415, 420, 459
Fnu4HI	GCNGC	2 cut(s)	264, 516
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	264, 516
GlaI	GCGC	2 cut(s)	77, 267
GluI	GCNGC	2 cut(s)	264, 516
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	164, 199, 278
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	2 cut(s)	78, 268
Hin1II	CATG	7 cut(s)	44, 50, 299, 365, 419, 424, 463
Hin6I	GCGC	2 cut(s)	76, 266
HinP1I	GCGC	2 cut(s)	76, 266
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	169, 490
Hpy166II	GTNNAC	2 cut(s)	28, 533
Hpy188III	TCNNGA	4 cut(s)	52, 296, 346, 504
Hpy8I	GTNNAC	2 cut(s)	28, 533
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	6 cut(s)	89, 148, 154, 252, 289, 475
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	5 cut(s)	89, 151, 386, 515, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 590
HpyF3I	CTNAG	2 cut(s)	126, 201
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	44, 50, 299, 365, 419, 424, 463
HspAI	GCGC	2 cut(s)	76, 266
KpnI	GGTACC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	339, 488, 524
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	2 cut(s)	275, 527
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	341, 490, 526
MboI	GATC	3 cut(s)	339, 488, 524
MboII	GAAGA	2 cut(s)	223, 334
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	2 cut(s)	339, 524
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	404, 587
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	5 cut(s)	177, 239, 362, 444, 469
MseI	TTAA	2 cut(s)	84, 389
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	2 cut(s)	66, 78
MwoI	GCNNNNNNNGC	2 cut(s)	392, 590
NdeII	GATC	3 cut(s)	339, 488, 524
NlaIII	CATG	7 cut(s)	44, 50, 299, 365, 419, 424, 463
NlaIV	GGNNCC	2 cut(s)	123, 165
NspI	RCATGY	2 cut(s)	50, 463
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	2 cut(s)	199, 278
PciI	ACATGT	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	265, 517
Ppu21I	YACGTR	1 cut(s)	22
PscI	ACATGT	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	123, 165
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	339, 524
RsaI	GTAC	4 cut(s)	29, 72, 123, 352
RsaNI	GTAC	4 cut(s)	28, 71, 122, 351
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	84, 389
SatI	GCNGC	2 cut(s)	264, 516
Sau3AI	GATC	3 cut(s)	339, 488, 524
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	45
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	2 cut(s)	404, 587
SseBI	AGGCCT	2 cut(s)	199, 278
SsiI	CCGC	2 cut(s)	78, 393
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	2 cut(s)	199, 278
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	404, 587
TatI	WGTACW	3 cut(s)	27, 70, 350
Tru1I	TTAA	2 cut(s)	84, 389
Tru9I	TTAA	2 cut(s)	84, 389
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	2 cut(s)	263, 515
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	388
XceI	RCATGY	2 cut(s)	50, 463
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.