AT5G59400

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012056
Physical Location & Seq
Forward (+)
23957737 .. 23959707
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59400.1

Sequence Viewer

Length: 900 bp
ATGGCGGGTACTTGCACTTCGATAAGGCCTCGTCTCATTGGCTCTTCTTCAATTGTTGAGCTTTCAAGGTTGATTAATCGAGCTGGAGTTCCTTTCTCTGTACGATTCTCTACAAGAACCAGAGCCCTCCACGGTGGTGGTTTAACCGCACCTACCTCTCGTGAGGAAGGTCCTTCTTGTATCTTCGTTGGACCTATTGATTCTGCTCGCAAAGAAACTCTAGAAGCTCTTTATCGCCAAGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATGTTTGACAGAGTTGAGCTAAAGCTTCGGTGGTATGGTTCAAAATCTGTTGTCAAGTATCCTCGGTGTAGTCTACTAAGACAGTCAACATATGCTGATGCAGAGGATGATGCATCGCAAGTTCTCCTGTTAGCTACCGTATGGATTATGATTTTCTTATTTGGTAGTTCGGCATGTGTTTTACCCACGATATATGGCGTCGGCCTGGTTTATGGAGGAGATCCGTTTGACTCAGGGCTTGTCTATAGCAGTCAGTTGTCATCTTCTGTGCCTATTTTGTCAAAGTTTAATGGCATCCTCCTCTCCGTGCTAGGGCCTGCTTTTGGATATCCGATTGCATCTTCTGCAGTAAGAGTACTTAAAGGGTTATGGAGAAATGACTTAACGGCTCTAAAAGGAGACTGCCCGAATTGCGGGGAAGAGGTTTTCGCATTTGTGAGATCCGATCAATCGAACCGATCAGCTCACAAAGCCGACTGTCATGTCTGTGAGTGCACCTTGGAGTTCCGTACCAAAGTAGAGAAATCTGCCTCACGATTGGGGAGAAAATGGGTTTACGGTAGGATATACCTTGTTTCACGGCCAAGGAGAGATCGGCGTTCAAAGTTTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.05

Weight (kDa)

9.49

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AccI GTMKAC 1 cut(s) 358
AciI CCGC 3 cut(s) 5, 147, 699
AclWI GGATC 2 cut(s) 500, 720
AcoI YGGCCR 1 cut(s) 866
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 4 cut(s) 10, 102, 642, 796
AfiI CCNNNNNNNGG 4 cut(s) 244, 597, 608, 698
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 51, 66, 327, 888
AjnI CCWGG 1 cut(s) 489
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 8 cut(s) 61, 83, 227, 242, 304, 310, 419, 749
AluI AGCT 8 cut(s) 61, 83, 227, 242, 304, 310, 419, 749
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 2 cut(s) 38, 678
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 2 cut(s) 500, 720
AoxI GGCC 4 cut(s) 26, 487, 599, 866
ApaLI GTGCAC 1 cut(s) 778
AseI ATTAAT 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 170, 191, 599
AvaII GGWCC 2 cut(s) 170, 191
BaeGI GKGCMC 1 cut(s) 782
BanII GRGCYC 1 cut(s) 127
BarI GAAGNNNNNNTAC 1 cut(s) 33
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 782
BceAI ACGGC 2 cut(s) 687, 881
BciT130I CCWGG 1 cut(s) 491
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 38, 678
BfaI CTAG 2 cut(s) 221, 596
BfmI CTRYAG 2 cut(s) 529, 630
BfuI GTATCC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 642
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 2 cut(s) 170, 191
BmgT120I GGNCC 3 cut(s) 170, 191, 599
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 6 cut(s) 238, 373, 385, 407, 588, 632
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 130, 347, 783, 869
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 597, 608, 698
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 4 cut(s) 130, 347, 783, 869
BseGI GGATG 3 cut(s) 253, 397, 579
BseLI CCNNNNNNNGG 4 cut(s) 244, 597, 608, 698
BseMII CTCAG 1 cut(s) 531
BseRI GAGGAG 2 cut(s) 516, 575
BseSI GKGCMC 1 cut(s) 782
BshFI GGCC 4 cut(s) 28, 489, 601, 868
BsiHKAI GWGCWC 1 cut(s) 782
BslI CCNNNNNNNGG 4 cut(s) 244, 597, 608, 698
BsmAI GTCTC 2 cut(s) 38, 678
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 4 cut(s) 28, 489, 601, 868
Bsp1286I GDGCHC 2 cut(s) 127, 782
Bsp143I GATC 5 cut(s) 505, 725, 730, 743, 877
BspACI CCGC 3 cut(s) 5, 147, 699
BspANI GGCC 4 cut(s) 28, 489, 601, 868
BspCNI CTCAG 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 500, 720
BspQI GCTCTTC 1 cut(s) 49
BssECI CCNNGG 4 cut(s) 130, 347, 783, 869
BssMI GATC 5 cut(s) 505, 725, 730, 743, 877
BssNI GRCGYC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 783, 869
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 5 cut(s) 134, 369, 424, 764, 845
Bst6I CTCTTC 2 cut(s) 49, 699
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 208, 266, 603
BstDEI CTNAG 3 cut(s) 243, 362, 517
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 3 cut(s) 253, 397, 579
BstKTI GATC 5 cut(s) 508, 728, 733, 746, 880
BstMAI GTCTC 2 cut(s) 38, 678
BstMBI GATC 5 cut(s) 505, 725, 730, 743, 877
BstMWI GCNNNNNNNGC 4 cut(s) 248, 629, 696, 755
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 2 cut(s) 289, 462
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 529, 630
BstSLI GKGCMC 1 cut(s) 782
BstX2I RGATCY 2 cut(s) 505, 725
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 2 cut(s) 505, 725
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 4 cut(s) 28, 489, 601, 868
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 3 cut(s) 253, 397, 579
Cac8I GCNNGC 3 cut(s) 208, 266, 603
Cfr13I GGNCC 3 cut(s) 170, 191, 599
CseI GACGC 1 cut(s) 472
Csp6I GTAC 4 cut(s) 9, 101, 641, 795
CviAII CATG 3 cut(s) 286, 459, 767
CviQI GTAC 4 cut(s) 9, 101, 641, 795
DdeI CTNAG 3 cut(s) 243, 362, 517
DpnI GATC 5 cut(s) 507, 727, 732, 745, 879
DpnII GATC 5 cut(s) 505, 725, 730, 743, 877
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 1 cut(s) 866
Eam1104I CTCTTC 2 cut(s) 49, 699
EarI CTCTTC 2 cut(s) 49, 699
Eco130I CCWWGG 2 cut(s) 783, 869
Eco147I AGGCCT 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 614
Eco47I GGWCC 2 cut(s) 170, 191
EcoO109I RGGNCCY 2 cut(s) 170, 599
EcoRII CCWGG 1 cut(s) 489
EcoRV GATATC 1 cut(s) 614
EcoT14I CCWWGG 2 cut(s) 783, 869
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 783, 869
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 289, 462, 770
FatI CATG 3 cut(s) 285, 458, 766
FauI CCCGC 1 cut(s) 692
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 358
FokI GGATG 3 cut(s) 260, 404, 566
FriOI GRGCYC 1 cut(s) 127
FspBI CTAG 2 cut(s) 221, 596
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 4 cut(s) 28, 489, 601, 868
HgaI GACGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 3 cut(s) 289, 462, 770
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 105, 200, 515
Hpy166II GTNNAC 5 cut(s) 359, 372, 780, 841, 894
Hpy188I TCNGA 2 cut(s) 618, 730
Hpy188III TCNNGA 3 cut(s) 161, 221, 819
Hpy8I GTNNAC 5 cut(s) 359, 372, 780, 841, 894
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 161, 183
HpyCH4III ACNGT 5 cut(s) 134, 369, 424, 764, 845
HpyCH4V TGCA 6 cut(s) 15, 386, 398, 623, 632, 780
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 629, 696, 755
HpyF3I CTNAG 3 cut(s) 243, 362, 517
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 3 cut(s) 289, 462, 770
Kzo9I GATC 5 cut(s) 505, 725, 730, 743, 877
LguI GCTCTTC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 69, 133, 425, 476, 503, 504, 615
LweI GCATC 6 cut(s) 238, 373, 385, 407, 588, 632
MaeI CTAG 2 cut(s) 221, 596
MalI GATC 5 cut(s) 507, 727, 732, 745, 879
MboI GATC 5 cut(s) 505, 725, 730, 743, 877
MboII GAAGA 6 cut(s) 36, 39, 175, 540, 618, 716
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 2 cut(s) 505, 725
MhlI GDGCHC 2 cut(s) 127, 782
MluCI AATT 2 cut(s) 51, 694
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 5 cut(s) 75, 143, 573, 645, 668
MslI CAYNNNNRTG 2 cut(s) 135, 771
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 248, 629, 696, 755
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 505, 725, 730, 743, 877
NlaIII CATG 3 cut(s) 289, 462, 770
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 289, 462
OliI CACNNNNGTG 1 cut(s) 135
PceI AGGCCT 1 cut(s) 28
PciI ACATGT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 105, 200
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 170
PscI ACATGT 1 cut(s) 285
PshBI ATTAAT 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspPI GGNCC 3 cut(s) 170, 191, 599
PspPPI RGGWCCY 1 cut(s) 170
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 2 cut(s) 505, 725
RsaI GTAC 4 cut(s) 10, 102, 642, 796
RsaNI GTAC 4 cut(s) 9, 101, 641, 795
RseI CAYNNNNRTG 2 cut(s) 135, 771
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 5 cut(s) 75, 143, 573, 645, 668
Sau3AI GATC 5 cut(s) 505, 725, 730, 743, 877
Sau96I GGNCC 3 cut(s) 170, 191, 599
ScaI AGTACT 1 cut(s) 642
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 2 cut(s) 127, 782
SfaNI GCATC 6 cut(s) 238, 373, 385, 407, 588, 632
SfcI CTRYAG 2 cut(s) 529, 630
SinI GGWCC 2 cut(s) 170, 191
SmiMI CAYNNNNRTG 2 cut(s) 135, 771
Sse9I AATT 2 cut(s) 51, 694
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 3 cut(s) 5, 147, 699
SspMI CTAG 2 cut(s) 221, 596
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 2 cut(s) 783, 869
TaaI ACNGT 5 cut(s) 134, 369, 424, 764, 845
TaqI TCGA 3 cut(s) 20, 79, 737
TasI AATT 2 cut(s) 51, 694
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 2 cut(s) 105, 200
Tru1I TTAA 5 cut(s) 75, 143, 573, 645, 668
Tru9I TTAA 5 cut(s) 75, 143, 573, 645, 668
TspGWI ACGGA 3 cut(s) 498, 580, 782
VneI GTGCAC 1 cut(s) 778
VpaK11BI GGWCC 2 cut(s) 170, 191
VspI ATTAAT 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 220
XceI RCATGY 2 cut(s) 289, 462
XmiI GTMKAC 1 cut(s) 358
XspI CTAG 2 cut(s) 221, 596
ZrmI AGTACT 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.