pycom03g07180

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012056
Physical Location & Seq
Reverse (-)
5729324 .. 5730525
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07180.3

Sequence Viewer

Length: 555 bp
ATGAAAACGACGTCGCGTATCGCCTTGAAAAGCATCCTCTCCATCTTTCCGACCAACCACAGCCAATCAAACCACCCAGATATTTACGCGCCAAAACCATTTCCGTGGCCCAAACTCTCTCGCTCTCTCTCCCCTCTCTCAACCGCTTACTTCAGCTCCAAATCCATGGCGGCCACGAGCGCCTCCTTCACTCCGCGCTTAGTGGGGTCCAGAGTAAACCCTAGAACCGCCGGAGCTCCGTTCTCCGTTCGAATCTCCTCCGGCGGTAACTATCCGACGACCCGCGATACCCTCGCCGAGGGCCCCTACTGTATCTACGTCGGCCCCATCGAAACCGCCAGCAAGGAAACCCTCGAAGCCCTCTACAGCCAAGCACGTGATGCGTATTACAGTGGCGACCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGTTGAAGCTAAGATGGTACGGCTCGAAATGCGTCATGAAATACCCACGTTGTAGTCTTAGGAGACAATCAACTTATGCAGATGCTGAGGGCAGGAAGATTTATCACAGGTTTTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.66

Weight (kDa)

9.71

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccII CGCG 4 cut(s) 16, 89, 196, 285
AciI CCGC 7 cut(s) 144, 170, 194, 228, 264, 283, 336
AcoI YGGCCR 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 136
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 2 cut(s) 28, 439
AluBI AGCT 3 cut(s) 156, 236, 442
AluI AGCT 3 cut(s) 156, 236, 442
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 490
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 4 cut(s) 107, 171, 301, 322
ApaI GGGCCC 1 cut(s) 305
AspLEI GCGC 3 cut(s) 91, 182, 198
AspS9I GGNCC 5 cut(s) 108, 207, 301, 302, 323
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 238, 305
BauI CACGAG 1 cut(s) 175
BbrPI CACGTG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 3 cut(s) 50, 335, 441
BceAI ACGGC 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 5 cut(s) 108, 207, 301, 302, 323
BmiI GGNNCC 4 cut(s) 208, 303, 304, 325
BmsI GCATC 3 cut(s) 42, 370, 505
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 104, 165, 297
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseDI CCNNGG 3 cut(s) 104, 165, 297
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 305
Bsh1236I CGCG 4 cut(s) 16, 89, 196, 285
BshFI GGCC 4 cut(s) 109, 173, 303, 324
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 231, 261
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 490
BsnI GGCC 4 cut(s) 109, 173, 303, 324
Bsp119I TTCGAA 1 cut(s) 250
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 238, 305
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 7 cut(s) 144, 170, 194, 228, 264, 283, 336
BspANI GGCC 4 cut(s) 109, 173, 303, 324
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 4 cut(s) 16, 89, 196, 285
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 4 cut(s) 208, 303, 304, 325
BspT104I TTCGAA 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 104, 165, 297
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 311, 392
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 4 cut(s) 199, 443, 491, 519
BstDSI CCRYGG 2 cut(s) 104, 165
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 4 cut(s) 16, 89, 196, 285
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 3 cut(s) 91, 182, 198
BstMAI GTCTC 1 cut(s) 490
BstMWI GCNNNNNNNGC 3 cut(s) 179, 380, 462
BstNSI RCATGY 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 4 cut(s) 16, 89, 196, 285
BstXI CCANNNNNNTGG 2 cut(s) 105, 166
BsuRI GGCC 4 cut(s) 109, 173, 303, 324
BtgI CCRYGG 2 cut(s) 104, 165
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 468
CfoI GCGC 3 cut(s) 91, 182, 198
Cfr13I GGNCC 5 cut(s) 108, 207, 301, 302, 323
CseI GACGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 166, 418, 469
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 4 cut(s) 199, 443, 491, 519
EaeI YGGCCR 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 238, 305
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 301, 302
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 238, 305
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 169, 421, 472
FaiI YATR 4 cut(s) 167, 419, 470, 510
FatI CATG 3 cut(s) 165, 417, 468
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 2 cut(s) 238, 305
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 222
GlaI GCGC 3 cut(s) 90, 181, 197
GluI GCNGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 4 cut(s) 109, 173, 303, 324
HapII CCGG 2 cut(s) 231, 261
HgaI GACGC 1 cut(s) 454
HhaI GCGC 3 cut(s) 91, 182, 198
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 3 cut(s) 169, 421, 472
Hin6I GCGC 3 cut(s) 89, 180, 196
HinP1I GCGC 3 cut(s) 89, 180, 196
HinfI GANTC 1 cut(s) 252
HpaII CCGG 2 cut(s) 231, 261
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 51, 276
Hpy188III TCNNGA 2 cut(s) 210, 469
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 4 cut(s) 13, 16, 280, 323
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 311, 392
HpyCH4IV ACGT 4 cut(s) 11, 318, 376, 481
HpyCH4V TGCA 2 cut(s) 512, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 380, 462
HpyF3I CTNAG 4 cut(s) 199, 443, 491, 519
HpySE526I ACGT 4 cut(s) 11, 318, 376, 481
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 169, 421, 472
HspAI GCGC 3 cut(s) 89, 180, 196
LmnI GCTCC 3 cut(s) 161, 233, 241
LpnPI CCDG 7 cut(s) 90, 223, 244, 274, 352, 511, 526
LweI GCATC 3 cut(s) 42, 370, 505
MaeI CTAG 1 cut(s) 222
MaeII ACGT 4 cut(s) 11, 318, 376, 481
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 238, 305
MmeI TCCRAC 2 cut(s) 74, 299
MnlI CCTC 9 cut(s) 47, 144, 193, 268, 292, 302, 362, 371, 514
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 2 cut(s) 231, 261
MvnI CGCG 4 cut(s) 16, 89, 196, 285
MwoI GCNNNNNNNGC 3 cut(s) 179, 380, 462
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 3 cut(s) 169, 421, 472
NlaIV GGNNCC 4 cut(s) 208, 303, 304, 325
NmeAIII GCCGAG 1 cut(s) 322
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 250
PagI TCATGA 1 cut(s) 468
PciI ACATGT 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 377
PscI ACATGT 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 238
PspCI CACGTG 1 cut(s) 377
PspN4I GGNNCC 4 cut(s) 208, 303, 304, 325
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 5 cut(s) 108, 207, 301, 302, 323
PstNI CAGNNNCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 103
SacI GAGCTC 1 cut(s) 238
SatI GCNGC 1 cut(s) 171
Sau96I GGNCC 5 cut(s) 108, 207, 301, 302, 323
SduI GDGCHC 2 cut(s) 238, 305
SetI ASST 8 cut(s) 14, 158, 238, 321, 379, 444, 484, 545
SfaNI GCATC 3 cut(s) 42, 370, 505
SfcI CTRYAG 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 103
SsiI CCGC 7 cut(s) 144, 170, 194, 228, 264, 283, 336
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 238
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 311, 392
TaiI ACGT 4 cut(s) 14, 321, 379, 484
TaqI TCGA 4 cut(s) 250, 330, 354, 458
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 17, 485
TspGWI ACGGA 3 cut(s) 93, 228, 235
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 1 cut(s) 421
XspI CTAG 1 cut(s) 222
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.