Rh5DG456800

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012056
Physical Location & Seq
Forward (+)
72703566 .. 72706098
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG456800.1

Sequence Viewer

Length: 891 bp
ATGGCGGGCACGGGCGCCTCCTTCGCCCCCCACCACTTAATCGGGTCCACCGTCCCCGAAAGTTCCAGAACCCTCCGAACCGGAGCTCCATTCTCCGCTCGTATCTCCGCCAGCGGCAGCCACCTCGCCACCACTCGCGACGACCCCGCCGCCGGCCCCTCCTGCATCTACGTCGGCCCAATCGAAACCGCCAGCAAAGAAACCCTCGAAGCCCTCTACCGTCAAGCACGTGATGCGTACTACAGTGGCGACCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGTTGAAGTTGAGATGGTACGGTTCGAAATGCGTGGTGAAATACCCCCGTTGCAGTCTCCGGCGACAGTCGGCTTACTCCGATGCTGAGGCAGACGTATCACAGGTTTTTGCATTAGCGAGCATATGGATACTCATTCTTGCGTTTGGCACTGGATCGTTTCTCATGCCCATATTATACACTGTTGGCCTAGCTTATCAAAATGCATTCAGTCCAGGACTTTCTTATGTAAATCCAGCTGCTAGCCTTTCCATGCTGAATAGCATTCTCTTTATGATAGTCGGTTCTGTCGTTGGTCTCCCTATTGCATCTGCTTCGGTTAAAGTACTTGAAGGCCTATGGACGAACGACTTGATGGCACTGAAGGGGGTGTGCCCAAACTGTGGGGAGGAGGTATTTGCATTTGTGAAATCAGATCAGTCTAATAACTCCCCACATAGAGCAAATTGTCATGTATGTGAATGCTTGTTAGAATTCCGCACCAAGGCTGAGGTAATTTGGCTGCTTCTTGTTTCCCCCACCAAATTTCATGTGTTAAAACTTGTATTTTGTGAAGATCTAGATTCAAAGATGACAATTATAGAGAAGTCAGGAGTATTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.15

Weight (kDa)

6.31

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 98
AccII CGCG 1 cut(s) 138
AciI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 2 cut(s) 758, 809
AcuI CTGAAG 1 cut(s) 668
AcvI CACGTG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 239, 305, 612
AfiI CCNNNNNNNGG 3 cut(s) 152, 668, 769
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 3 cut(s) 292, 617, 852
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 3 cut(s) 86, 479, 524
AluI AGCT 3 cut(s) 86, 479, 524
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 347, 587
AlwI GGATC 1 cut(s) 448
AoxI GGCC 4 cut(s) 154, 175, 472, 619
ApeKI GCWGC 3 cut(s) 117, 524, 787
ApoI RAATTY 2 cut(s) 758, 809
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 45, 155, 176
AsuHPI GGTGA 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 527
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 2 cut(s) 11, 662
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 88
BbrPI CACGTG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 2 cut(s) 372, 774
BbvI GCAGC 3 cut(s) 129, 511, 774
BccI CCATC 2 cut(s) 294, 634
BcgI CGANNNNNNTGC 6 cut(s) 106, 140, 154, 188, 582, 616
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 347, 587
BfaI CTAG 3 cut(s) 476, 528, 845
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 841
BisI GCNGC 5 cut(s) 115, 118, 150, 525, 788
BlsI GCNGC 5 cut(s) 116, 119, 151, 526, 789
BmcAI AGTACT 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 45, 155, 176
BmiI GGNNCC 3 cut(s) 16, 46, 157
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 4 cut(s) 174, 223, 358, 602
BmtI GCTAGC 1 cut(s) 531
Bpu10I CCTNAGC 2 cut(s) 372, 774
Bpu14I TTCGAA 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 668, 769
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 768
BseLI CCNNNNNNNGG 3 cut(s) 152, 668, 769
BseMII CTCAG 2 cut(s) 363, 765
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 2 cut(s) 11, 662
BseXI GCAGC 3 cut(s) 129, 511, 774
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 4 cut(s) 156, 177, 474, 621
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 81, 153, 346
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 152, 668, 769
BsmAI GTCTC 2 cut(s) 347, 587
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 3 cut(s) 491, 549, 752
BsnI GGCC 4 cut(s) 156, 177, 474, 621
Bso31I GGTCTC 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 11, 88, 662
Bsp143I GATC 3 cut(s) 440, 700, 841
Bsp68I TCGCGA 1 cut(s) 138
BspACI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
BspANI GGCC 4 cut(s) 156, 177, 474, 621
BspCNI CTCAG 2 cut(s) 364, 766
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 16, 46, 157
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 3 cut(s) 440, 700, 841
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 6 cut(s) 7, 112, 154, 193, 406, 529
BstDEI CTNAG 2 cut(s) 372, 774
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 443, 703, 844
BstMAI GTCTC 2 cut(s) 347, 587
BstMBI GATC 3 cut(s) 440, 700, 841
BstMWI GCNNNNNNNGC 3 cut(s) 23, 162, 233
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 11, 662
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 129, 511, 774
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 156, 177, 474, 621
BtsIMutI CAGTG 4 cut(s) 250, 435, 465, 644
BtuMI TCGCGA 1 cut(s) 138
Cac8I GCNNGC 6 cut(s) 7, 112, 154, 193, 406, 529
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 45, 155, 176
Csp6I GTAC 3 cut(s) 238, 304, 611
CviAII CATG 5 cut(s) 271, 451, 538, 737, 815
CviQI GTAC 3 cut(s) 238, 304, 611
DdeI CTNAG 2 cut(s) 372, 774
DinI GGCGCC 1 cut(s) 16
DpnI GATC 3 cut(s) 442, 702, 843
DpnII GATC 3 cut(s) 440, 700, 841
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 768
Eco147I AGGCCT 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 668
Eco72I CACGTG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 768
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 5 cut(s) 274, 454, 541, 740, 818
FaqI GGGAC 1 cut(s) 38
FatI CATG 5 cut(s) 270, 450, 537, 736, 814
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 410
Fnu4HI GCNGC 5 cut(s) 115, 118, 150, 525, 788
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 5 cut(s) 115, 118, 150, 525, 788
FspBI CTAG 3 cut(s) 476, 528, 845
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 115, 118, 150, 525, 788
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 4 cut(s) 156, 177, 474, 621
HapII CCGG 3 cut(s) 81, 153, 346
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 5 cut(s) 274, 454, 541, 740, 818
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 848
HpaII CCGG 3 cut(s) 81, 153, 346
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 77, 367, 700
Hpy188III TCNNGA 4 cut(s) 66, 137, 845, 876
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 143, 176
HpyAV CCTTC 3 cut(s) 31, 611, 643
HpyCH4III ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
HpyCH4IV ACGT 3 cut(s) 171, 229, 381
HpyCH4V TGCA 6 cut(s) 165, 339, 398, 491, 593, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 162, 233
HpyF3I CTNAG 2 cut(s) 372, 774
HpySE526I ACGT 3 cut(s) 171, 229, 381
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 5 cut(s) 274, 454, 541, 740, 818
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 3 cut(s) 440, 700, 841
LmnI GCTCC 2 cut(s) 83, 91
Lsp1109I GCAGC 3 cut(s) 129, 511, 774
LweI GCATC 4 cut(s) 174, 223, 358, 602
MaeI CTAG 3 cut(s) 476, 528, 845
MaeII ACGT 3 cut(s) 171, 229, 381
MalI GATC 3 cut(s) 442, 702, 843
MbiI CCGCTC 1 cut(s) 98
MboI GATC 3 cut(s) 440, 700, 841
MboII GAAGA 1 cut(s) 851
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 3 cut(s) 11, 88, 662
MluCI AATT 5 cut(s) 730, 758, 780, 809, 861
Mly113I GGCGCC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 3 cut(s) 38, 606, 821
MslI CAYNNNNRTG 1 cut(s) 741
MspA1I CMGCKG 2 cut(s) 114, 524
MspI CCGG 3 cut(s) 81, 153, 346
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 3 cut(s) 491, 549, 752
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 23, 162, 233
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 15
NdeI CATATG 1 cut(s) 410
NdeII GATC 3 cut(s) 440, 700, 841
NgoMIV GCCGGC 1 cut(s) 152
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 5 cut(s) 274, 454, 541, 740, 818
NlaIV GGNNCC 3 cut(s) 16, 46, 157
NruI TCGCGA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 311
PceI AGGCCT 1 cut(s) 621
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 180, 573
PctI GAATGC 3 cut(s) 491, 549, 752
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 848
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 5 cut(s) 116, 119, 151, 526, 789
PluTI GGCGCC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 499
PspCI CACGTG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 16, 46, 157
PspPI GGNCC 3 cut(s) 45, 155, 176
PsuI RGATCY 1 cut(s) 841
PvuII CAGCTG 1 cut(s) 524
RruI TCGCGA 1 cut(s) 138
RsaI GTAC 3 cut(s) 239, 305, 612
RsaNI GTAC 3 cut(s) 238, 304, 611
RseI CAYNNNNRTG 1 cut(s) 741
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 38, 606, 821
SatI GCNGC 5 cut(s) 115, 118, 150, 525, 788
Sau3AI GATC 3 cut(s) 440, 700, 841
Sau96I GGNCC 3 cut(s) 45, 155, 176
ScaI AGTACT 1 cut(s) 612
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 11, 88, 662
SfaNI GCATC 4 cut(s) 174, 223, 358, 602
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 311
SinI GGWCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 741
Sse9I AATT 5 cut(s) 730, 758, 780, 809, 861
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 8 cut(s) 5, 96, 108, 114, 147, 150, 189, 763
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 3 cut(s) 476, 528, 845
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 7 cut(s) 52, 221, 245, 308, 354, 469, 668
TaiI ACGT 3 cut(s) 174, 232, 384
TaqI TCGA 3 cut(s) 183, 207, 311
TasI AATT 5 cut(s) 730, 758, 780, 809, 861
TatI WGTACW 1 cut(s) 610
TauI GCSGC 2 cut(s) 117, 152
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 3 cut(s) 38, 606, 821
Tru9I TTAA 3 cut(s) 38, 606, 821
TscAI CASTG 4 cut(s) 250, 442, 472, 651
TseI GCWGC 3 cut(s) 117, 524, 787
TspDTI ATGAA 1 cut(s) 803
TspRI CASTG 4 cut(s) 250, 442, 472, 651
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 2 cut(s) 758, 809
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 1 cut(s) 274
XspI CTAG 3 cut(s) 476, 528, 845
ZrmI AGTACT 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.