MD11G1099800.v1.1

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012056
Physical Location & Seq
Reverse (-)
8343155 .. 8346044
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1099800.v1.1.491

Sequence Viewer

Length: 900 bp
ATGGCGGCCACGAGCGCCTCCTTCACTCCACACTTGGTGGGGTCCACAGTCCCCGAACTTTCCAGAAACCCTAGAACCACCGGAGCTCCGTTCTCCGTCCGAATCTCCTCAGGCAGTAACTACCCGACGACCCGCGATAAGCTCTCCGAGGGCCCCTACTGCATCTACGTCGGCCCGATCGAAACCGCCAGCAAAGAAACCCTCGAAGCCCTCCACCGTCAGGCAAGTGATGCGTATTACAGTGGCGACCCTTTGATTGTCGATGACATGTTTGACAGAGTCGAGATGAAGCTAAGATGGTACGGATCGAAATGCGTCGTGAAATACCCACGTTGTAGTCTTAGGAGACAATCAACTTATGCAGATGCTGAGGAAGATTTCTCACAGGTTTTTGCATTAGCGAGCATATGGATCCTCTTTCTTGCTTTTGGCAGTTCAGTGTGTCTTGTGCCTGTTTTTTACACTGTTGGCCTAGCTTATCAAGATGCTTTCAATCCAGTATTTTCGTATATAAACCAAGCGCCTGCTCTTTCGATGCTTAATTCCGTTCTCTTCGTGACGCTGGGTTCTGTCATCGGTTACCCAATTGCATCAGCTTCTGTGTCAGCATATACTAAAGTTTCCTTTCTCACAGTTAAAGTACTTAAAGGCCTGTGGAGAAATGACTTGGTGGCACTAAAAGGGGCATGCCCAAATTGCGGCGATGAGGTGTTTGCATTTGTGAAATCCGATCAGTCTAATAACTCCCCGCATAGAGCAAATTGTCATGTATGTGAATGCTTGTTAGAGTTCCGTACTAAGGTTGAGAAATCTGTTTCACCACTCGGTAGAAGATGGGTATACGGCCGTATCTATCTTGTTTCGCGAGGAGGCAGAAGCGAACTCCAAAGACGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.13

Weight (kDa)

8.9

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 840
AccII CGCG 2 cut(s) 135, 865
AciI CCGC 5 cut(s) 5, 133, 186, 699, 749
AclWI GGATC 3 cut(s) 313, 406, 419
AcoI YGGCCR 2 cut(s) 6, 844
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 3 cut(s) 302, 642, 796
AfiI CCNNNNNNNGG 3 cut(s) 220, 698, 799
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 493
AluBI AGCT 5 cut(s) 86, 142, 292, 476, 596
AluI AGCT 5 cut(s) 86, 142, 292, 476, 596
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 3 cut(s) 313, 406, 419
AlwNI CAGNNNCTG 2 cut(s) 368, 599
AoxI GGCC 6 cut(s) 6, 151, 172, 469, 649, 844
ApaI GGGCCC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 17, 523
AspS9I GGNCC 4 cut(s) 42, 151, 152, 173
AsuHPI GGTGA 1 cut(s) 810
AvaII GGWCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 155
BaeI ACNNNNGTAYC 2 cut(s) 832, 865
BamHI GGATCC 1 cut(s) 411
BanII GRGCYC 2 cut(s) 88, 155
BauI CACGAG 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 2 cut(s) 291, 828
BceAI ACGGC 2 cut(s) 831, 859
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 2 cut(s) 72, 473
BfoI RGCGCY 2 cut(s) 18, 524
BisI GCNGC 2 cut(s) 6, 700
BlsI GCNGC 2 cut(s) 7, 701
BmcAI AGTACT 1 cut(s) 642
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 4 cut(s) 42, 151, 152, 173
BmiI GGNNCC 4 cut(s) 43, 153, 154, 413
BmsI GCATC 6 cut(s) 171, 220, 355, 475, 525, 599
Bpu10I CCTNAGC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 698, 799
Bse1I ACTGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 220, 698, 799
BseMII CTCAG 2 cut(s) 123, 360
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 2 cut(s) 97, 882
BseSI GKGCMC 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 844
BseYI CCCAGC 1 cut(s) 562
Bsh1236I CGCG 2 cut(s) 135, 865
Bsh1285I CGRYCG 2 cut(s) 180, 847
BshFI GGCC 6 cut(s) 8, 153, 174, 471, 651, 846
BsiEI CGRYCG 2 cut(s) 180, 847
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 220, 698, 799
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 6 cut(s) 8, 153, 174, 471, 651, 846
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 88, 155
Bsp143I GATC 4 cut(s) 177, 305, 411, 730
Bsp68I TCGCGA 1 cut(s) 865
BspACI CCGC 5 cut(s) 5, 133, 186, 699, 749
BspANI GGCC 6 cut(s) 8, 153, 174, 471, 651, 846
BspCNI CTCAG 2 cut(s) 122, 361
BspFNI CGCG 2 cut(s) 135, 865
BspLI GGNNCC 4 cut(s) 43, 153, 154, 413
BspPI GGATC 3 cut(s) 313, 406, 419
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 177, 305, 411, 730
BssNAI GTATAC 1 cut(s) 841
BssSI CACGAG 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 841
Bst2BI CACGAG 1 cut(s) 10
Bst4CI ACNGT 5 cut(s) 49, 218, 242, 466, 634
Bst6I CTCTTC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 190, 403, 525, 688
BstDEI CTNAG 5 cut(s) 109, 293, 341, 369, 798
BstEII GGTNACC 1 cut(s) 578
BstFNI CGCG 2 cut(s) 135, 865
BstH2I RGCGCY 2 cut(s) 18, 524
BstHHI GCGC 2 cut(s) 17, 523
BstKTI GATC 4 cut(s) 180, 308, 414, 733
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 4 cut(s) 177, 305, 411, 730
BstMCI CGRYCG 2 cut(s) 180, 847
BstMWI GCNNNNNNNGC 4 cut(s) 14, 159, 230, 696
BstNSI RCATGY 2 cut(s) 271, 690
BstPI GGTNACC 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 2 cut(s) 135, 865
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 841
BstZI CGGCCG 1 cut(s) 844
Bsu36I CCTNAGG 1 cut(s) 109
BsuRI GGCC 6 cut(s) 8, 153, 174, 471, 651, 846
BtgZI GCGATG 1 cut(s) 717
BtsIMutI CAGTG 3 cut(s) 247, 444, 462
BtuMI TCGCGA 1 cut(s) 865
Cac8I GCNNGC 4 cut(s) 190, 403, 525, 688
CaiI CAGNNNCTG 2 cut(s) 368, 599
CfoI GCGC 2 cut(s) 17, 523
Cfr13I GGNCC 4 cut(s) 42, 151, 152, 173
CseI GACGC 2 cut(s) 304, 568
Csp6I GTAC 3 cut(s) 301, 641, 795
CviAII CATG 3 cut(s) 268, 687, 767
CviQI GTAC 3 cut(s) 301, 641, 795
DdeI CTNAG 5 cut(s) 109, 293, 341, 369, 798
DpnI GATC 4 cut(s) 179, 307, 413, 732
DpnII GATC 4 cut(s) 177, 305, 411, 730
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 6, 844
EagI CGGCCG 1 cut(s) 844
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 844
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 2 cut(s) 88, 155
Eco47I GGWCC 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 844
Eco53kI GAGCTC 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 86
EcoO109I RGGNCCY 2 cut(s) 151, 152
EcoO65I GGTNACC 1 cut(s) 578
EcoT38I GRGCYC 2 cut(s) 88, 155
FaeI CATG 3 cut(s) 271, 690, 770
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 267, 686, 766
FauI CCCGC 2 cut(s) 140, 756
FauNDI CATATG 1 cut(s) 407
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 6, 700
FriOI GRGCYC 2 cut(s) 88, 155
Fsp4HI GCNGC 2 cut(s) 6, 700
FspBI CTAG 2 cut(s) 72, 473
GlaI GCGC 2 cut(s) 16, 522
GluI GCNGC 2 cut(s) 6, 700
GsaI CCCAGC 1 cut(s) 566
HaeII RGCGCY 2 cut(s) 18, 524
HaeIII GGCC 6 cut(s) 8, 153, 174, 471, 651, 846
HapII CCGG 1 cut(s) 81
HgaI GACGC 2 cut(s) 304, 568
HhaI GCGC 2 cut(s) 17, 523
Hin1II CATG 3 cut(s) 271, 690, 770
Hin6I GCGC 2 cut(s) 15, 521
HinP1I GCGC 2 cut(s) 15, 521
HinfI GANTC 2 cut(s) 102, 279
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 810
Hpy166II GTNNAC 2 cut(s) 45, 841
Hpy188I TCNGA 3 cut(s) 101, 148, 730
Hpy188III TCNNGA 6 cut(s) 63, 283, 319, 482, 556, 864
Hpy8I GTNNAC 2 cut(s) 45, 841
Hpy99I CGWCG 3 cut(s) 130, 173, 320
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 5 cut(s) 49, 218, 242, 466, 634
HpyCH4IV ACGT 2 cut(s) 168, 331
HpyCH4V TGCA 5 cut(s) 162, 362, 395, 590, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 159, 230, 696
HpyF3I CTNAG 5 cut(s) 109, 293, 341, 369, 798
HpySE526I ACGT 2 cut(s) 168, 331
Hsp92II CATG 3 cut(s) 271, 690, 770
HspAI GCGC 2 cut(s) 15, 521
Kzo9I GATC 4 cut(s) 177, 305, 411, 730
LmnI GCTCC 2 cut(s) 83, 91
LweI GCATC 6 cut(s) 171, 220, 355, 475, 525, 599
MaeI CTAG 2 cut(s) 72, 473
MaeII ACGT 2 cut(s) 168, 331
MaeIII GTNAC 3 cut(s) 116, 556, 578
MalI GATC 4 cut(s) 179, 307, 413, 732
MboI GATC 4 cut(s) 177, 305, 411, 730
MboII GAAGA 3 cut(s) 386, 544, 843
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 88, 155
MluCI AATT 4 cut(s) 541, 585, 694, 760
MlyI GAGTC 1 cut(s) 288
MseI TTAA 3 cut(s) 540, 636, 645
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 782
MvnI CGCG 2 cut(s) 135, 865
MwoI GCNNNNNNNGC 4 cut(s) 14, 159, 230, 696
NdeI CATATG 1 cut(s) 407
NdeII GATC 4 cut(s) 177, 305, 411, 730
NlaIII CATG 3 cut(s) 271, 690, 770
NlaIV GGNNCC 4 cut(s) 43, 153, 154, 413
NmuCI GTSAC 1 cut(s) 556
NruI TCGCGA 1 cut(s) 865
NspI RCATGY 2 cut(s) 271, 690
PaeI GCATGC 1 cut(s) 690
PceI AGGCCT 1 cut(s) 651
PciI ACATGT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 102
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 7, 701
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PscI ACATGT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 562
PspN4I GGNNCC 4 cut(s) 43, 153, 154, 413
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 42, 151, 152, 173
PstNI CAGNNNCTG 2 cut(s) 368, 599
PsuI RGATCY 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 278
PvuI CGATCG 1 cut(s) 180
RruI TCGCGA 1 cut(s) 865
RsaI GTAC 3 cut(s) 302, 642, 796
RsaNI GTAC 3 cut(s) 301, 641, 795
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 540, 636, 645
SatI GCNGC 2 cut(s) 6, 700
Sau3AI GATC 4 cut(s) 177, 305, 411, 730
Sau96I GGNCC 4 cut(s) 42, 151, 152, 173
ScaI AGTACT 1 cut(s) 642
SchI GAGTC 1 cut(s) 288
SduI GDGCHC 2 cut(s) 88, 155
SfaNI GCATC 6 cut(s) 171, 220, 355, 475, 525, 599
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 771
SphI GCATGC 1 cut(s) 690
Sse9I AATT 4 cut(s) 541, 585, 694, 760
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 5 cut(s) 5, 133, 186, 699, 749
SspMI CTAG 2 cut(s) 72, 473
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 651
TaaI ACNGT 5 cut(s) 49, 218, 242, 466, 634
TaiI ACGT 2 cut(s) 171, 334
TaqI TCGA 6 cut(s) 180, 204, 261, 282, 308, 533
TasI AATT 4 cut(s) 541, 585, 694, 760
TatI WGTACW 1 cut(s) 640
TauI GCSGC 2 cut(s) 8, 702
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 540, 636, 645
Tru9I TTAA 3 cut(s) 540, 636, 645
TscAI CASTG 3 cut(s) 247, 444, 469
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 5 cut(s) 78, 85, 318, 535, 782
TspRI CASTG 3 cut(s) 247, 444, 469
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 42
XceI RCATGY 2 cut(s) 271, 690
XmiI GTMKAC 1 cut(s) 840
XspI CTAG 2 cut(s) 72, 473
ZrmI AGTACT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.