RLG00000035784

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012056
Physical Location & Seq
Forward (+)
71574760 .. 71577617
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035784

Sequence Viewer

Length: 1014 bp
ATGAAAGAAGATTTCAAACAAGCAAGCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAGACGCATTCCTTTTCATTTCGTCTCTTTCCTATGTTTTTTCCCATTTCCTGGAAAACGACGTCGAATATTTGATCTAGAAAAGTATTCCTCTGCCTTATTCTTCTGCCCAGAAAGGCCAGACTCATCCTCAGCCAATCAACCAACCCAGATATTTACGCGCCAAAACCATTTCCGTGGCCCCAAACCCTCTCTCCCTCTCACAACCTCACCACTCAGCTTGAGGTGCTTCACCTCCACGCTCTTCAGTTTCATGGCGGGCACGGGCGCCTCCTTCGCCCCCCACCACTTAATCGGGTCTACCGTCCCCGAAAGTTCCAGAACCCTCCGAACCGGAGCTCCATTCTTGGCTCGTATCTCCGCCAGCGGCAGCCACCTCGCCACCACTCGCGACGACCCCGCCGCCGGCCCCTCCTGCATCTACGTCGGCCCAATTGAAACCGCCAGTAAAGAAACCCTCGAAGCCCTCTACCGTCAAGCACGTGATGCGTACTACAGTGGCGACCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGTTGAAGTTGAGATGGTACGGTTCGAAATGCGTGGTGAAATACCCCCGTTGCAGTCTCCGGCGACAGTCGGCTTACTCCGATGCTGAGGCAGACATATCACAGGTTTTTGCATTAGCGAGCATATGGATACTCATTCTTGCGTTTGGCACTGGATCGTTTCTCATGCCCATATTATACACTGTTGGCCTAGCTTATCAAAATGCATTCAGTCCAGGACTTTCTTATGTAAATCCAGCAGCTAGTCTTTCCATGCTGAATAGCATTCTCTTTATGATTGTCGGTTCTGTCGTTGGTCTCCCCATTGCATCTGCTTCGGGTAAGTTAATCTGCATCCATTATACTAGTGAATTCTGTTGTCAAATATGGAAAATTGAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.16

Weight (kDa)

9.08

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 389
AccII CGCG 2 cut(s) 250, 480
AciI CCGC 6 cut(s) 347, 450, 456, 489, 492, 531
AclWI GGATC 1 cut(s) 790
AcsI RAATTY 1 cut(s) 977
AcuI CTGAAG 1 cut(s) 319
AcvI CACGTG 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 151, 357
AfaI GTAC 2 cut(s) 581, 647
AfiI CCNNNNNNNGG 2 cut(s) 140, 494
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 4 cut(s) 16, 527, 634, 1004
AhlI ACTAGT 1 cut(s) 971
AjnI CCWGG 2 cut(s) 139, 841
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 4 cut(s) 309, 428, 821, 869
AluI AGCT 4 cut(s) 309, 428, 821, 869
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 118, 689, 929
AlwI GGATC 1 cut(s) 790
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 5 cut(s) 206, 268, 496, 517, 814
ApeKI GCWGC 2 cut(s) 459, 866
ApoI RAATTY 1 cut(s) 977
AspLEI GCGC 2 cut(s) 252, 359
AspS9I GGNCC 3 cut(s) 269, 497, 518
AsuC2I CCSGG 3 cut(s) 74, 75, 87
AsuHPI GGTGA 3 cut(s) 291, 313, 676
AsuII TTCGAA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 2 cut(s) 220, 714
BbvI GCAGC 2 cut(s) 471, 878
BccI CCATC 1 cut(s) 636
BcgI CGANNNNNNTGC 6 cut(s) 448, 482, 496, 530, 924, 958
BciT130I CCWGG 2 cut(s) 141, 843
BciVI GTATCC 1 cut(s) 750
BcnI CCSGG 3 cut(s) 74, 75, 87
BcoDI GTCTC 3 cut(s) 118, 689, 929
BcuI ACTAGT 1 cut(s) 971
BfaI CTAG 4 cut(s) 167, 818, 870, 972
BfmI CTRYAG 2 cut(s) 31, 583
BfoI RGCGCY 1 cut(s) 360
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 4 cut(s) 457, 460, 492, 867
BlsI GCNGC 4 cut(s) 458, 461, 493, 868
Bme1390I CCNGG 5 cut(s) 74, 75, 87, 141, 843
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 269, 497, 518
BmiI GGNNCC 3 cut(s) 271, 358, 499
BmrFI CCNGG 5 cut(s) 74, 75, 87, 141, 843
BmsI GCATC 5 cut(s) 516, 565, 700, 944, 969
Bpu10I CCTNAGC 2 cut(s) 220, 714
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 3 cut(s) 74, 75, 87
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 2 cut(s) 151, 357
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 2 cut(s) 73, 265
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 412, 442
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 494
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 534, 784
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 141, 843
BseDI CCNNGG 2 cut(s) 73, 265
BseGI GGATG 2 cut(s) 215, 960
BseLI CCNNNNNNNGG 2 cut(s) 140, 494
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 3 cut(s) 234, 319, 705
BseNI ACTGG 2 cut(s) 534, 784
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 471, 878
Bsh1236I CGCG 2 cut(s) 250, 480
BshFI GGCC 5 cut(s) 208, 270, 498, 519, 816
BshNI GGYRCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 5 cut(s) 74, 87, 423, 495, 688
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 140, 494
BsmAI GTCTC 3 cut(s) 118, 689, 929
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 3 cut(s) 96, 833, 891
BsnI GGCC 5 cut(s) 208, 270, 498, 519, 816
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 353, 430
Bsp143I GATC 2 cut(s) 163, 782
Bsp68I TCGCGA 1 cut(s) 480
BspACI CCGC 6 cut(s) 347, 450, 456, 489, 492, 531
BspANI GGCC 5 cut(s) 208, 270, 498, 519, 816
BspCNI CTCAG 3 cut(s) 233, 318, 706
BspFNI CGCG 2 cut(s) 250, 480
BspLI GGNNCC 3 cut(s) 271, 358, 499
BspPI GGATC 1 cut(s) 790
BspQI GCTCTTC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 2 cut(s) 534, 784
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 73, 265
BssMI GATC 2 cut(s) 163, 782
BssNI GRCGYC 2 cut(s) 151, 357
Bst2UI CCWGG 2 cut(s) 141, 843
Bst4CI ACNGT 7 cut(s) 43, 394, 563, 587, 650, 696, 811
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 2 cut(s) 151, 357
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 572
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 5 cut(s) 25, 349, 454, 496, 748
BstDEI CTNAG 3 cut(s) 220, 305, 714
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 215, 960
BstFNI CGCG 2 cut(s) 250, 480
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 252, 359
BstKTI GATC 2 cut(s) 166, 785
BstMAI GTCTC 3 cut(s) 118, 689, 929
BstMBI GATC 2 cut(s) 163, 782
BstMWI GCNNNNNNNGC 5 cut(s) 62, 315, 365, 504, 575
BstNI CCWGG 2 cut(s) 141, 843
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 5 cut(s) 72, 73, 85, 139, 841
BstSFI CTRYAG 2 cut(s) 31, 583
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 2 cut(s) 250, 480
BstV1I GCAGC 2 cut(s) 471, 878
BstXI CCANNNNNNTGG 1 cut(s) 266
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 5 cut(s) 208, 270, 498, 519, 816
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 215, 960
BtsIMutI CAGTG 3 cut(s) 592, 777, 807
BtuMI TCGCGA 1 cut(s) 480
Cac8I GCNNGC 5 cut(s) 25, 349, 454, 496, 748
CfoI GCGC 2 cut(s) 252, 359
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 3 cut(s) 269, 497, 518
Cfr9I CCCGGG 1 cut(s) 73
CseI GACGC 2 cut(s) 16, 102
Csp6I GTAC 2 cut(s) 580, 646
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 4 cut(s) 343, 613, 793, 880
CviQI GTAC 2 cut(s) 580, 646
DdeI CTNAG 3 cut(s) 220, 305, 714
DinI GGCGCC 1 cut(s) 358
DpnI GATC 2 cut(s) 165, 784
DpnII GATC 2 cut(s) 163, 782
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 2 cut(s) 139, 841
EcoT22I ATGCAT 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 4 cut(s) 346, 616, 796, 883
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 342, 612, 792, 879
FauI CCCGC 2 cut(s) 340, 496
FauNDI CATATG 1 cut(s) 752
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 4 cut(s) 457, 460, 492, 867
FokI GGATG 2 cut(s) 202, 947
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 457, 460, 492, 867
FspBI CTAG 4 cut(s) 167, 818, 870, 972
GlaI GCGC 2 cut(s) 251, 358
GluI GCNGC 4 cut(s) 457, 460, 492, 867
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 208, 270, 498, 519, 816
HapII CCGG 5 cut(s) 74, 87, 423, 495, 688
HgaI GACGC 2 cut(s) 16, 102
HhaI GCGC 2 cut(s) 252, 359
Hin1I GRCGYC 2 cut(s) 151, 357
Hin1II CATG 4 cut(s) 346, 616, 796, 883
Hin6I GCGC 2 cut(s) 250, 357
HinP1I GCGC 2 cut(s) 250, 357
HinfI GANTC 2 cut(s) 82, 212
HpaII CCGG 5 cut(s) 74, 87, 423, 495, 688
HphI GGTGA 3 cut(s) 291, 313, 676
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 2 cut(s) 419, 709
Hpy188III TCNNGA 3 cut(s) 167, 408, 479
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 4 cut(s) 153, 156, 485, 518
HpyAV CCTTC 2 cut(s) 67, 373
HpyCH4III ACNGT 7 cut(s) 43, 394, 563, 587, 650, 696, 811
HpyCH4IV ACGT 3 cut(s) 151, 513, 571
HpyCH4V TGCA 6 cut(s) 507, 681, 740, 833, 935, 960
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 315, 365, 504, 575
HpyF3I CTNAG 3 cut(s) 220, 305, 714
HpySE526I ACGT 3 cut(s) 151, 513, 571
Hsp92I GRCGYC 2 cut(s) 151, 357
Hsp92II CATG 4 cut(s) 346, 616, 796, 883
HspAI GCGC 2 cut(s) 250, 357
KasI GGCGCC 1 cut(s) 356
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
Kzo9I GATC 2 cut(s) 163, 782
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 2 cut(s) 425, 433
Lsp1109I GCAGC 2 cut(s) 471, 878
LweI GCATC 5 cut(s) 516, 565, 700, 944, 969
MaeI CTAG 4 cut(s) 167, 818, 870, 972
MaeII ACGT 3 cut(s) 151, 513, 571
MalI GATC 2 cut(s) 165, 784
MboI GATC 2 cut(s) 163, 782
MboII GAAGA 3 cut(s) 20, 184, 325
MfeI CAATTG 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 353, 430
MluCI AATT 4 cut(s) 51, 522, 977, 999
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 2 cut(s) 76, 206
MmeI TCCRAC 1 cut(s) 62
Mph1103I ATGCAT 1 cut(s) 835
MroNI GCCGGC 1 cut(s) 494
MseI TTAA 2 cut(s) 380, 953
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 5 cut(s) 74, 87, 423, 495, 688
MspR9I CCNGG 5 cut(s) 74, 75, 87, 141, 843
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 3 cut(s) 96, 833, 891
MvaI CCWGG 2 cut(s) 141, 843
MvnI CGCG 2 cut(s) 250, 480
MwoI GCNNNNNNNGC 5 cut(s) 62, 315, 365, 504, 575
NaeI GCCGGC 1 cut(s) 496
NarI GGCGCC 1 cut(s) 357
NciI CCSGG 3 cut(s) 74, 75, 87
NdeI CATATG 1 cut(s) 752
NdeII GATC 2 cut(s) 163, 782
NgoMIV GCCGGC 1 cut(s) 494
NlaIII CATG 4 cut(s) 346, 616, 796, 883
NlaIV GGNNCC 3 cut(s) 271, 358, 499
NruI TCGCGA 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 653
PciI ACATGT 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 915
PctI GAATGC 3 cut(s) 96, 833, 891
PdiI GCCGGC 1 cut(s) 496
PflMI CCANNNNNTGG 1 cut(s) 140
PfoI TCCNGGA 2 cut(s) 139, 841
PkrI GCNGC 4 cut(s) 458, 461, 493, 868
PleI GAGTC 2 cut(s) 76, 206
PluTI GGCGCC 1 cut(s) 360
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 2 cut(s) 76, 206
Ppu21I YACGTR 1 cut(s) 572
PscI ACATGT 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 139, 841
PspCI CACGTG 1 cut(s) 572
PspGI CCWGG 2 cut(s) 139, 841
PspN4I GGNNCC 3 cut(s) 271, 358, 499
PspPI GGNCC 3 cut(s) 269, 497, 518
RruI TCGCGA 1 cut(s) 480
RsaI GTAC 2 cut(s) 581, 647
RsaNI GTAC 2 cut(s) 580, 646
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 380, 953
SatI GCNGC 4 cut(s) 457, 460, 492, 867
Sau3AI GATC 2 cut(s) 163, 782
Sau96I GGNCC 3 cut(s) 269, 497, 518
SchI GAGTC 2 cut(s) 76, 206
ScrFI CCNGG 5 cut(s) 74, 75, 87, 141, 843
SduI GDGCHC 2 cut(s) 353, 430
SfaNI GCATC 5 cut(s) 516, 565, 700, 944, 969
SfcI CTRYAG 2 cut(s) 31, 583
SfoI GGCGCC 1 cut(s) 358
SfuI TTCGAA 1 cut(s) 653
SmaI CCCGGG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 971
Sse9I AATT 4 cut(s) 51, 522, 977, 999
SsiI CCGC 6 cut(s) 347, 450, 456, 489, 492, 531
SspDI GGCGCC 1 cut(s) 356
SspI AATATT 1 cut(s) 159
SspMI CTAG 4 cut(s) 167, 818, 870, 972
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 5 cut(s) 72, 73, 85, 139, 841
TaaI ACNGT 7 cut(s) 43, 394, 563, 587, 650, 696, 811
TaiI ACGT 3 cut(s) 154, 516, 574
TaqI TCGA 4 cut(s) 80, 154, 549, 653
TasI AATT 4 cut(s) 51, 522, 977, 999
TauI GCSGC 2 cut(s) 459, 494
Tru1I TTAA 2 cut(s) 380, 953
Tru9I TTAA 2 cut(s) 380, 953
TscAI CASTG 3 cut(s) 592, 784, 814
TseI GCWGC 2 cut(s) 459, 866
TspDTI ATGAA 3 cut(s) 17, 95, 331
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 73
TspRI CASTG 3 cut(s) 592, 784, 814
Van91I CCANNNNNTGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 977
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 616
XmaI CCCGGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 4 cut(s) 167, 818, 870, 972
ZraI GACGTC 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.