FvH4_3g36480

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012056
Physical Location & Seq
Forward (+)
31253111 .. 31255874
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36480.t2

Sequence Viewer

Length: 864 bp
ATGGCCAGCACGGGCGCCTCCTTCGCTCCCCACTTAATCGGCTCCACCGAAAGTTCCAGAGCCCTCCGAACCGGAGCTCCATTCTCCGCCCGGATCTCCACCGGCGGCAACAACCACCTCGCCACCACTCGCGACGACCTCGCCGCCGGCCCCTACTGCATCTACGTCGGCCCTATCGAAACCGCCAGCAAAGAAACCCTCGAAGCCCTCTACCGTCAAGCACGTGATGCGTACTACAGTGGCGACCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGTTGAAATTGAGATGGTATGGTTCGAAATGCGTTGTGAAATACCCCCGGTGCAGTCTGCGGAGACAGTCGGCTTACGCTGATGCTGAGGCAGACGTATCACAGGTTTTTGCATTAGCGAGCATATGGATACTCTTTCTTGCGTTTGGCAGTGCATCGTGTCTCATGCCCATAATATACACTGTTGGCCTTGCTTATCATGATGCATTCAGTCCAGGACTTAGTTATGTAAATCAAGCAGCTGCTTTTTCCATGCTGAATGGTGTTCTCTTTATGACATTCGGTTCTGTCATTGGTTACCCAATTGCAGCTGCTTCGGTTAAGGTACTTGAAGGACTATGGAGGAACGACTTGATGGCACTGAAAGGGGCGTGCCCGAACTGTGGGGAGGAGGTGTTTGCATTTGTGAAAACAGATCAGTCTAATAACTCCCCACATAGAGCAAATTGTCATGTATGTGAATGCTTGCTAGAATTCCGCACCAAGGCTGAGAAATCCCTTTCGCCTCTGGGTAGAAGATGGGTTTATGGACGTATCTATCTGGTTTCAAGAAAAGGTCGAGGTCGACTTCAAAGAAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.55

Weight (kDa)

8.93

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 844
AccII CGCG 1 cut(s) 132
AciI CCGC 6 cut(s) 87, 105, 144, 183, 340, 757
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 752
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 233, 606
AfiI CCNNNNNNNGG 2 cut(s) 662, 763
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 4 cut(s) 286, 611, 828, 851
AjnI CCWGG 1 cut(s) 493
AloI GAACNNNNNNTCC 2 cut(s) 61, 93
AluBI AGCT 3 cut(s) 77, 521, 590
AluI AGCT 3 cut(s) 77, 521, 590
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 337, 446
AlwI GGATC 1 cut(s) 101
AoxI GGCC 4 cut(s) 3, 148, 169, 466
ApeKI GCWGC 4 cut(s) 518, 521, 587, 590
ApoI RAATTY 1 cut(s) 752
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 149, 170
AsuC2I CCSGG 2 cut(s) 91, 328
AsuII TTCGAA 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 2 cut(s) 64, 79
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 508, 530, 577, 599
BccI CCATC 3 cut(s) 288, 628, 792
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 576, 610
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 402
BcnI CCSGG 2 cut(s) 91, 328
BcoDI GTCTC 2 cut(s) 337, 446
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 6 cut(s) 106, 144, 519, 522, 588, 591
BlsI GCNGC 6 cut(s) 107, 145, 520, 523, 589, 592
Bme1390I CCNGG 3 cut(s) 91, 328, 495
BmgT120I GGNCC 2 cut(s) 149, 170
BmiI GGNNCC 3 cut(s) 16, 43, 151
BmrFI CCNGG 3 cut(s) 91, 328, 495
BmsI GCATC 5 cut(s) 168, 217, 352, 443, 472
Bpu10I CCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 91, 328
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 326, 762
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 659, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 763
Bse118I RCCGGY 2 cut(s) 101, 146
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 326, 762
BseLI CCNNNNNNNGG 2 cut(s) 662, 763
BseMII CTCAG 2 cut(s) 357, 759
BseRI GAGGAG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 4 cut(s) 508, 530, 577, 599
BsgI GTGCAG 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 4 cut(s) 5, 150, 171, 468
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 5 cut(s) 72, 91, 102, 147, 328
BslI CCNNNNNNNGG 2 cut(s) 662, 763
BsmAI GTCTC 2 cut(s) 337, 446
BsmI GAATGC 2 cut(s) 485, 746
BsnI GGCC 4 cut(s) 5, 150, 171, 468
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 64, 79, 656
Bsp143I GATC 2 cut(s) 93, 694
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 6 cut(s) 87, 105, 144, 183, 340, 757
BspANI GGCC 4 cut(s) 5, 150, 171, 468
BspCNI CTCAG 2 cut(s) 358, 760
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 16, 43, 151
BspPI GGATC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 101, 146
BssAI RCCGGY 2 cut(s) 101, 146
BssECI CCNNGG 2 cut(s) 326, 762
BssMI GATC 2 cut(s) 93, 694
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 5 cut(s) 215, 239, 348, 463, 662
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 6 cut(s) 7, 148, 187, 400, 652, 746
BstDEI CTNAG 3 cut(s) 366, 500, 768
BstEII GGTNACC 1 cut(s) 575
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 96, 697
BstMAI GTCTC 2 cut(s) 337, 446
BstMBI GATC 2 cut(s) 93, 694
BstMWI GCNNNNNNNGC 3 cut(s) 23, 156, 227
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 89, 326, 493
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 508, 530, 577, 599
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 4 cut(s) 5, 150, 171, 468
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 4 cut(s) 244, 436, 459, 638
BtuMI TCGCGA 1 cut(s) 132
Cac8I GCNNGC 6 cut(s) 7, 148, 187, 400, 652, 746
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 2 cut(s) 101, 146
Cfr13I GGNCC 2 cut(s) 149, 170
Csp6I GTAC 2 cut(s) 232, 605
CviAII CATG 5 cut(s) 265, 445, 479, 532, 731
CviQI GTAC 2 cut(s) 232, 605
DdeI CTNAG 3 cut(s) 366, 500, 768
DinI GGCGCC 1 cut(s) 16
DpnI GATC 2 cut(s) 95, 696
DpnII GATC 2 cut(s) 93, 694
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 762
Eco24I GRGCYC 2 cut(s) 64, 79
Eco53kI GAGCTC 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 2 cut(s) 64, 79
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 5 cut(s) 268, 448, 482, 535, 734
FatI CATG 5 cut(s) 264, 444, 478, 531, 730
FauNDI CATATG 1 cut(s) 404
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 6 cut(s) 106, 144, 519, 522, 588, 591
FriOI GRGCYC 2 cut(s) 64, 79
Fsp4HI GCNGC 6 cut(s) 106, 144, 519, 522, 588, 591
FspBI CTAG 1 cut(s) 749
GlaI GCGC 1 cut(s) 16
GluI GCNGC 6 cut(s) 106, 144, 519, 522, 588, 591
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 4 cut(s) 5, 150, 171, 468
HapII CCGG 5 cut(s) 72, 91, 102, 147, 328
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 5 cut(s) 268, 448, 482, 535, 734
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 845
HindII GTYRAC 1 cut(s) 845
HpaII CCGG 5 cut(s) 72, 91, 102, 147, 328
Hpy166II GTNNAC 1 cut(s) 845
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 4 cut(s) 57, 131, 479, 828
Hpy8I GTNNAC 1 cut(s) 845
Hpy99I CGWCG 2 cut(s) 137, 170
HpyAV CCTTC 3 cut(s) 31, 605, 849
HpyCH4III ACNGT 5 cut(s) 215, 239, 348, 463, 662
HpyCH4IV ACGT 4 cut(s) 165, 223, 375, 811
HpyCH4V TGCA 7 cut(s) 159, 333, 392, 434, 485, 587, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 156, 227
HpyF3I CTNAG 3 cut(s) 366, 500, 768
HpySE526I ACGT 4 cut(s) 165, 223, 375, 811
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 5 cut(s) 268, 448, 482, 535, 734
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 93, 694
LmnI GCTCC 4 cut(s) 31, 47, 74, 82
Lsp1109I GCAGC 4 cut(s) 508, 530, 577, 599
LweI GCATC 5 cut(s) 168, 217, 352, 443, 472
MaeI CTAG 1 cut(s) 749
MaeII ACGT 4 cut(s) 165, 223, 375, 811
MaeIII GTNAC 1 cut(s) 575
MalI GATC 2 cut(s) 95, 696
MboI GATC 2 cut(s) 93, 694
MboII GAAGA 1 cut(s) 807
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 64, 79, 656
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 287, 582, 724, 752
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 15
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 487
MroNI GCCGGC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 35, 600, 862
MslI CAYNNNNRTG 1 cut(s) 735
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 521, 590
MspI CCGG 5 cut(s) 72, 91, 102, 147, 328
MspR9I CCNGG 3 cut(s) 91, 328, 495
MunI CAATTG 1 cut(s) 582
Mva1269I GAATGC 2 cut(s) 485, 746
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 23, 156, 227
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 15
NciI CCSGG 2 cut(s) 91, 328
NdeI CATATG 1 cut(s) 404
NdeII GATC 2 cut(s) 93, 694
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 268, 448, 482, 535, 734
NlaIV GGNNCC 3 cut(s) 16, 43, 151
NruI TCGCGA 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 478
PciI ACATGT 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 174
PctI GAATGC 2 cut(s) 485, 746
PdiI GCCGGC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 6 cut(s) 107, 145, 520, 523, 589, 592
PluTI GGCGCC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PscI ACATGT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 493
PspCI CACGTG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 16, 43, 151
PspPI GGNCC 2 cut(s) 149, 170
PsuI RGATCY 1 cut(s) 93
PvuII CAGCTG 2 cut(s) 521, 590
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 2 cut(s) 233, 606
RsaNI GTAC 2 cut(s) 232, 605
RseI CAYNNNNRTG 1 cut(s) 735
SacI GAGCTC 1 cut(s) 79
SalI GTCGAC 1 cut(s) 843
SaqAI TTAA 3 cut(s) 35, 600, 862
SatI GCNGC 6 cut(s) 106, 144, 519, 522, 588, 591
Sau3AI GATC 2 cut(s) 93, 694
Sau96I GGNCC 2 cut(s) 149, 170
ScrFI CCNGG 3 cut(s) 91, 328, 495
SduI GDGCHC 3 cut(s) 64, 79, 656
SfaNI GCATC 5 cut(s) 168, 217, 352, 443, 472
SfcI CTRYAG 1 cut(s) 235
SfoI GGCGCC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 305
SgrAI CRCCGGYG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 735
Sse9I AATT 4 cut(s) 287, 582, 724, 752
SsiI CCGC 6 cut(s) 87, 105, 144, 183, 340, 757
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 1 cut(s) 749
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 89, 326, 493
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 5 cut(s) 215, 239, 348, 463, 662
TaiI ACGT 4 cut(s) 168, 226, 378, 814
TaqI TCGA 5 cut(s) 177, 201, 305, 838, 844
TasI AATT 4 cut(s) 287, 582, 724, 752
TauI GCSGC 2 cut(s) 108, 146
Tru1I TTAA 3 cut(s) 35, 600, 862
Tru9I TTAA 3 cut(s) 35, 600, 862
TscAI CASTG 4 cut(s) 244, 436, 466, 645
TseI GCWGC 4 cut(s) 518, 521, 587, 590
TspRI CASTG 4 cut(s) 244, 436, 466, 645
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 844
XspI CTAG 1 cut(s) 749
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.