MD03G1090200.v1.1

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012056
Physical Location & Seq
Reverse (-)
7428985 .. 7431830
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1090200.v1.1.491

Sequence Viewer

Length: 852 bp
ATGGCGGCCACGAGCTCCTCCTTCACTCCGCGCTTAGTGGGGTCCACAGTAAACCCTAGAACCGCCGGAGCTCCGTTCTCCGTTCGAATCTCCTCCGGCGGTAACTATCCGACGACCCGCGATACCCTCGCCGAGGGCCCCTACTGTATCTACGTCGGCCCCATCGAAACCGCCAGCAAGGAAACCCTCGAAGCCCTCTACAGCCAAGCACGTGATGCGTATTACAGCGGCGACCCTTTGATAGTCGATGACATGTTTGATAGAGTAGAGTTGAAGCTAAGATGGTACGGCTCGAAATGCGTCATGAAATACCCACGTTGTAGTCTTAGGAGACAATCAACTTATGCTGATGCTGAGGAAGATTTATCACAGGTTTTTGCATTAGCGAGCATATGGATCCTCTTTCTTGCCTTTGGCACTTCAGCGTGTCTTGTGCCCATGGTTTACTCTGTGGGAATAGCTTATAAAGATGCTTTCGATCCGGGATTTTCTTATATAAACCAAGCGTCTGCTCTTTCCATGCTAAATTCCATTCTCTGCATGACACTGGGTTGTGTCATCGGTTACCCAATTGCATCCGCTTCTGTTAAAGTACTTAAAGGCCTGTGGAGAAATGACTTGGTGGCACTAAAAGGAGTATGCCCAAATTGTGGGGATGAGGTGTTTGCATTTGTGCAATCCGATCAGTCTAATAACTCACCGCATAGAGCAAATTGTCATGTGTGCGAATGCTTGTTGGAGTTCCGTACCAAGGTTGAGAAATCTGTTTCACCACTCGGTAGAAGATGGGTCTACGGCCGTATCTATCTTGTTTCGCGAAGAGGCAGAAGCCAACTCCAAAGACGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.32

Weight (kDa)

8.83

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 650
AccI GTMKAC 1 cut(s) 792
AccII CGCG 3 cut(s) 31, 120, 817
AciI CCGC 9 cut(s) 5, 29, 63, 99, 118, 171, 228, 579, 701
AclWI GGATC 3 cut(s) 391, 404, 473
AcoI YGGCCR 2 cut(s) 6, 796
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 405
AcvI CACGTG 1 cut(s) 212
AfaI GTAC 3 cut(s) 287, 594, 748
AfiI CCNNNNNNNGG 3 cut(s) 133, 650, 751
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 4 cut(s) 15, 71, 277, 461
AluI AGCT 4 cut(s) 15, 71, 277, 461
Alw21I GWGCWC 2 cut(s) 17, 73
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 3 cut(s) 391, 404, 473
AoxI GGCC 5 cut(s) 6, 136, 157, 601, 796
ApaI GGGCCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 526
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 4 cut(s) 42, 136, 137, 158
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 690, 762
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 2 cut(s) 140, 438
BaeI ACNNNNGTAYC 2 cut(s) 784, 817
BamHI GGATCC 1 cut(s) 396
BanII GRGCYC 3 cut(s) 17, 73, 140
BauI CACGAG 1 cut(s) 10
BbrPI CACGTG 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 17, 73
BbvCI CCTCAGC 1 cut(s) 354
BccI CCATC 3 cut(s) 170, 276, 780
BceAI ACGGC 3 cut(s) 304, 783, 811
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 2 cut(s) 6, 229
BlsI GCNGC 2 cut(s) 7, 230
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 4 cut(s) 42, 136, 137, 158
BmiI GGNNCC 5 cut(s) 43, 138, 139, 160, 398
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 4 cut(s) 205, 340, 460, 584
BmuI ACTGGG 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 132, 438, 750
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 650, 751
Bse1I ACTGG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 132, 438, 750
BseGI GGATG 2 cut(s) 575, 661
BseLI CCNNNNNNNGG 3 cut(s) 133, 650, 751
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 2 cut(s) 7, 82
BseSI GKGCMC 2 cut(s) 140, 438
BseX3I CGGCCG 1 cut(s) 796
Bsh1236I CGCG 3 cut(s) 31, 120, 817
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 5 cut(s) 8, 138, 159, 603, 798
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 17, 73
BsiSI CCGG 3 cut(s) 66, 96, 482
BslI CCNNNNNNNGG 3 cut(s) 133, 650, 751
BsmAI GTCTC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 5 cut(s) 8, 138, 159, 603, 798
Bsp119I TTCGAA 1 cut(s) 85
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 4 cut(s) 17, 73, 140, 438
Bsp143I GATC 3 cut(s) 396, 478, 682
Bsp19I CCATGG 1 cut(s) 438
Bsp68I TCGCGA 1 cut(s) 817
BspACI CCGC 9 cut(s) 5, 29, 63, 99, 118, 171, 228, 579, 701
BspANI GGCC 5 cut(s) 8, 138, 159, 603, 798
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 3 cut(s) 31, 120, 817
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 5 cut(s) 43, 138, 139, 160, 398
BspPI GGATC 3 cut(s) 391, 404, 473
BspT104I TTCGAA 1 cut(s) 85
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 132, 438, 750
BssMI GATC 3 cut(s) 396, 478, 682
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 438, 750
Bst2BI CACGAG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 49, 146
Bst6I CTCTTC 1 cut(s) 814
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 175, 388
BstDEI CTNAG 4 cut(s) 34, 278, 326, 354
BstDSI CCRYGG 1 cut(s) 438
BstEII GGTNACC 1 cut(s) 563
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 575, 661
BstFNI CGCG 3 cut(s) 31, 120, 817
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 399, 481, 685
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 396, 478, 682
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 2 cut(s) 215, 297
BstNSI RCATGY 1 cut(s) 256
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 2 cut(s) 140, 438
BstUI CGCG 3 cut(s) 31, 120, 817
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BstZI CGGCCG 1 cut(s) 796
BsuRI GGCC 5 cut(s) 8, 138, 159, 603, 798
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 575, 661
BtsIMutI CAGTG 1 cut(s) 545
BtuMI TCGCGA 1 cut(s) 817
Cac8I GCNNGC 2 cut(s) 175, 388
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 4 cut(s) 42, 136, 137, 158
CseI GACGC 2 cut(s) 289, 495
Csp6I GTAC 3 cut(s) 286, 593, 747
CviAII CATG 6 cut(s) 253, 304, 439, 520, 541, 719
CviQI GTAC 3 cut(s) 286, 593, 747
DdeI CTNAG 4 cut(s) 34, 278, 326, 354
DpnI GATC 3 cut(s) 398, 480, 684
DpnII GATC 3 cut(s) 396, 478, 682
EaeI YGGCCR 2 cut(s) 6, 796
EagI CGGCCG 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Ecl136II GAGCTC 2 cut(s) 15, 71
EclXI CGGCCG 1 cut(s) 796
Eco130I CCWWGG 2 cut(s) 438, 750
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 3 cut(s) 17, 73, 140
Eco47I GGWCC 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 796
Eco53kI GAGCTC 2 cut(s) 15, 71
Eco57I CTGAAG 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 563
EcoICRI GAGCTC 2 cut(s) 15, 71
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoO109I RGGNCCY 2 cut(s) 136, 137
EcoO65I GGTNACC 1 cut(s) 563
EcoT14I CCWWGG 2 cut(s) 438, 750
EcoT38I GRGCYC 3 cut(s) 17, 73, 140
ErhI CCWWGG 2 cut(s) 438, 750
FaeI CATG 6 cut(s) 256, 307, 442, 523, 544, 722
FatI CATG 6 cut(s) 252, 303, 438, 519, 540, 718
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 392
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 2 cut(s) 6, 229
FokI GGATG 2 cut(s) 562, 668
FriOI GRGCYC 3 cut(s) 17, 73, 140
Fsp4HI GCNGC 2 cut(s) 6, 229
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 6, 229
HaeIII GGCC 5 cut(s) 8, 138, 159, 603, 798
HapII CCGG 3 cut(s) 66, 96, 482
HgaI GACGC 2 cut(s) 289, 495
HhaI GCGC 1 cut(s) 33
Hin1II CATG 6 cut(s) 256, 307, 442, 523, 544, 722
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 87
HpaII CCGG 3 cut(s) 66, 96, 482
HphI GGTGA 2 cut(s) 690, 762
Hpy166II GTNNAC 4 cut(s) 45, 52, 445, 793
Hpy188I TCNGA 2 cut(s) 111, 682
Hpy188III TCNNGA 2 cut(s) 304, 816
Hpy8I GTNNAC 4 cut(s) 45, 52, 445, 793
Hpy99I CGWCG 2 cut(s) 115, 158
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 49, 146
HpyCH4IV ACGT 3 cut(s) 153, 211, 316
HpyCH4V TGCA 5 cut(s) 380, 540, 575, 668, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 297
HpyF3I CTNAG 4 cut(s) 34, 278, 326, 354
HpySE526I ACGT 3 cut(s) 153, 211, 316
Hsp92II CATG 6 cut(s) 256, 307, 442, 523, 544, 722
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 396, 478, 682
LmnI GCTCC 3 cut(s) 20, 68, 76
LpnPI CCDG 7 cut(s) 79, 109, 187, 356, 495, 533, 617
LweI GCATC 4 cut(s) 205, 340, 460, 584
MaeI CTAG 1 cut(s) 57
MaeII ACGT 3 cut(s) 153, 211, 316
MaeIII GTNAC 2 cut(s) 101, 563
MalI GATC 3 cut(s) 398, 480, 684
MboI GATC 3 cut(s) 396, 478, 682
MboII GAAGA 3 cut(s) 371, 795, 831
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 4 cut(s) 17, 73, 140, 438
MluCI AATT 4 cut(s) 526, 570, 646, 712
MmeI TCCRAC 2 cut(s) 134, 717
MseI TTAA 2 cut(s) 588, 597
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 3 cut(s) 66, 96, 482
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 734
MvnI CGCG 3 cut(s) 31, 120, 817
MwoI GCNNNNNNNGC 2 cut(s) 215, 297
NciI CCSGG 1 cut(s) 483
NcoI CCATGG 1 cut(s) 438
NdeI CATATG 1 cut(s) 392
NdeII GATC 3 cut(s) 396, 478, 682
NlaIII CATG 6 cut(s) 256, 307, 442, 523, 544, 722
NlaIV GGNNCC 5 cut(s) 43, 138, 139, 160, 398
NmeAIII GCCGAG 1 cut(s) 157
NruI TCGCGA 1 cut(s) 817
NspI RCATGY 1 cut(s) 256
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 603
PciI ACATGT 1 cut(s) 252
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 1 cut(s) 87
PflMI CCANNNNNTGG 1 cut(s) 650
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 2 cut(s) 7, 230
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 212
PscI ACATGT 1 cut(s) 252
PsiI TTATAA 1 cut(s) 465
Psp124BI GAGCTC 2 cut(s) 17, 73
PspCI CACGTG 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 563
PspN4I GGNNCC 5 cut(s) 43, 138, 139, 160, 398
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 4 cut(s) 42, 136, 137, 158
PsuI RGATCY 1 cut(s) 396
RruI TCGCGA 1 cut(s) 817
RsaI GTAC 3 cut(s) 287, 594, 748
RsaNI GTAC 3 cut(s) 286, 593, 747
SacI GAGCTC 2 cut(s) 17, 73
SaqAI TTAA 2 cut(s) 588, 597
SatI GCNGC 2 cut(s) 6, 229
Sau3AI GATC 3 cut(s) 396, 478, 682
Sau96I GGNCC 4 cut(s) 42, 136, 137, 158
ScaI AGTACT 1 cut(s) 594
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 4 cut(s) 17, 73, 140, 438
SfaNI GCATC 4 cut(s) 205, 340, 460, 584
SfcI CTRYAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 42
Sse9I AATT 4 cut(s) 526, 570, 646, 712
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 9 cut(s) 5, 29, 63, 99, 118, 171, 228, 579, 701
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 2 cut(s) 17, 73
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 438, 750
TaaI ACNGT 2 cut(s) 49, 146
TaiI ACGT 3 cut(s) 156, 214, 319
TaqI TCGA 6 cut(s) 85, 165, 189, 246, 293, 477
TasI AATT 4 cut(s) 526, 570, 646, 712
TatI WGTACW 1 cut(s) 592
TauI GCSGC 2 cut(s) 8, 231
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 588, 597
Tru9I TTAA 2 cut(s) 588, 597
TscAI CASTG 1 cut(s) 552
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 3 cut(s) 63, 70, 734
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.