Prupe.6G074400_v2.0.a1

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012056
Physical Location & Seq
Reverse (-)
5085051 .. 5088035
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G074400.2

Sequence Viewer

Length: 858 bp
ATGGCTGCCGCGAACTCCTCCTTCACTCCGCACATAATTGGGTCCACAGTACCCGAACTTTCCAGGAACCCTAGAAACGGAGCTCTATTTTCCGTTCGAATCTCTTCGAGCAGTAACTATCCAACGACTCGCGATGAGCTCGCCGAGGGGCCATACTGTATCTACGTCGGCCCAATTGAAACCGCCAGCAAAGAAACCCTTGAAGCCCTCTACCGTCAAGCACGTGATGCGTATTACAGTGGTGACCCTTTGATAGTTGATGATATGTTTGATAGAGTAGAGCTGAAGCTAAGATGGTATGGATCGAAATGCGTTGTGAAATACCCTCGTTGCAGTCTGAGGCGACAGTCAACTTATGCCGATGCTGAGGAAGATTTATCACAGGTTTTTGCATTAGCAAGCATATGGATCCTCTTTCTTGCTTTTGGCAGTTCAGCGTGTCTTGTGCCCATGGTTTACACTGTTGGCCTAGCTTATCAAGAGGCTTTTAATCCAGGATTTTCTTATATAAACCAAGCGTTTGCTTTTTCCATGCTAAATGCCATTCTCTTCATGGCATTGGGTTCTGTCATCGGTTATCCAATTGCATCAGCTTCTGTTAAAGTACTTGAAGGCTTGTGGAGGAATGACTTGGTGGCGCTAAAAGGGGCATGCCCAAATTGTGGGGAGGAGGTGTTTGCATTTGTGAAATCCAATCAATCTAACTCCCCACATAGAGCAAATTGTCATGTATGTGAATGCTTGTTAGAGTTCCGTACCAAGGTTGAGAAATCCATTTCACCACTAGGTAGAAGATGGGTATATGGCAGTATCTATCTGGTTTCACGAGGCAGAAGCAGATTGCAAAGACGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.76

Weight (kDa)

8.68

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 662
AccII CGCG 2 cut(s) 11, 132
AciI CCGC 3 cut(s) 9, 29, 183
AclWI GGATC 3 cut(s) 310, 403, 416
AcuI CTGAAG 1 cut(s) 305
AcvI CACGTG 1 cut(s) 224
AfaI GTAC 3 cut(s) 51, 606, 757
AfiI CCNNNNNNNGG 3 cut(s) 77, 662, 760
AgsI TTSAA 3 cut(s) 179, 203, 611
AjnI CCWGG 2 cut(s) 62, 493
AluBI AGCT 6 cut(s) 83, 139, 283, 289, 473, 593
AluI AGCT 6 cut(s) 83, 139, 283, 289, 473, 593
Alw21I GWGCWC 2 cut(s) 85, 141
AlwI GGATC 3 cut(s) 310, 403, 416
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 3 cut(s) 149, 169, 466
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 3 cut(s) 42, 149, 170
AsuHPI GGTGA 2 cut(s) 254, 771
AsuII TTCGAA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 450
BamHI GGATCC 1 cut(s) 408
BanII GRGCYC 2 cut(s) 85, 141
BauI CACGAG 1 cut(s) 825
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 85, 141
BbvCI CCTCAGC 1 cut(s) 366
BccI CCATC 2 cut(s) 288, 789
BciT130I CCWGG 2 cut(s) 64, 495
BfaI CTAG 3 cut(s) 72, 470, 785
BfoI RGCGCY 1 cut(s) 641
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 2 cut(s) 64, 495
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 42, 149, 170
BmiI GGNNCC 4 cut(s) 43, 68, 150, 410
BmrFI CCNGG 2 cut(s) 64, 495
BmsI GCATC 3 cut(s) 217, 352, 596
Bpu10I CCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 144, 450, 759
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 662, 760
BseBI CCWGG 2 cut(s) 64, 495
BseDI CCNNGG 3 cut(s) 144, 450, 759
BseLI CCNNNNNNNGG 3 cut(s) 77, 662, 760
BseMII CTCAG 2 cut(s) 329, 357
BseRI GAGGAG 2 cut(s) 7, 683
BseSI GKGCMC 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 11, 132
BshFI GGCC 3 cut(s) 151, 171, 468
BsiHKAI GWGCWC 2 cut(s) 85, 141
BslI CCNNNNNNNGG 3 cut(s) 77, 662, 760
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 151, 171, 468
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 85, 141, 450
Bsp143I GATC 2 cut(s) 302, 408
Bsp19I CCATGG 1 cut(s) 450
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 3 cut(s) 9, 29, 183
BspANI GGCC 3 cut(s) 151, 171, 468
BspCNI CTCAG 2 cut(s) 330, 358
BspFNI CGCG 2 cut(s) 11, 132
BspLI GGNNCC 4 cut(s) 43, 68, 150, 410
BspPI GGATC 3 cut(s) 310, 403, 416
BspT104I TTCGAA 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 144, 450, 759
BssMI GATC 2 cut(s) 302, 408
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 450, 759
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 2 cut(s) 64, 495
Bst4CI ACNGT 6 cut(s) 49, 158, 215, 239, 348, 463
Bst6I CTCTTC 2 cut(s) 109, 554
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 141, 187, 400, 652
BstDEI CTNAG 3 cut(s) 290, 338, 366
BstDSI CCRYGG 1 cut(s) 450
BstEII GGTNACC 1 cut(s) 242
BstFNI CGCG 2 cut(s) 11, 132
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 2 cut(s) 305, 411
BstMBI GATC 2 cut(s) 302, 408
BstMWI GCNNNNNNNGC 2 cut(s) 227, 850
BstNI CCWGG 2 cut(s) 64, 495
BstNSI RCATGY 1 cut(s) 654
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 62, 493
BstSLI GKGCMC 1 cut(s) 450
BstUI CGCG 2 cut(s) 11, 132
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 3 cut(s) 151, 171, 468
BtgI CCRYGG 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 244, 459
BtuMI TCGCGA 1 cut(s) 132
Cac8I GCNNGC 4 cut(s) 141, 187, 400, 652
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 1 cut(s) 640
Cfr13I GGNCC 3 cut(s) 42, 149, 170
Csp6I GTAC 3 cut(s) 50, 605, 756
CviAII CATG 5 cut(s) 451, 532, 553, 651, 728
CviQI GTAC 3 cut(s) 50, 605, 756
DdeI CTNAG 3 cut(s) 290, 338, 366
DpnI GATC 2 cut(s) 304, 410
DpnII GATC 2 cut(s) 302, 408
Eam1104I CTCTTC 2 cut(s) 109, 554
EarI CTCTTC 2 cut(s) 109, 554
Ecl136II GAGCTC 2 cut(s) 83, 139
Eco130I CCWWGG 2 cut(s) 450, 759
Eco24I GRGCYC 2 cut(s) 85, 141
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 2 cut(s) 83, 139
Eco57I CTGAAG 1 cut(s) 305
Eco72I CACGTG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 242
EcoICRI GAGCTC 2 cut(s) 83, 139
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 62, 493
EcoT14I CCWWGG 2 cut(s) 450, 759
EcoT38I GRGCYC 2 cut(s) 85, 141
ErhI CCWWGG 2 cut(s) 450, 759
FaeI CATG 5 cut(s) 454, 535, 556, 654, 731
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 5 cut(s) 450, 531, 552, 650, 727
FauNDI CATATG 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 6, 9
FriOI GRGCYC 2 cut(s) 85, 141
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 3 cut(s) 72, 470, 785
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 6, 9
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 3 cut(s) 151, 171, 468
HhaI GCGC 1 cut(s) 640
Hin1II CATG 5 cut(s) 454, 535, 556, 654, 731
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 2 cut(s) 99, 127
HphI GGTGA 2 cut(s) 254, 771
Hpy166II GTNNAC 3 cut(s) 45, 351, 457
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 3 cut(s) 131, 479, 825
Hpy8I GTNNAC 3 cut(s) 45, 351, 457
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 31, 605
HpyCH4III ACNGT 6 cut(s) 49, 158, 215, 239, 348, 463
HpyCH4IV ACGT 2 cut(s) 165, 223
HpyCH4V TGCA 5 cut(s) 333, 392, 587, 680, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 850
HpyF3I CTNAG 3 cut(s) 290, 338, 366
HpySE526I ACGT 2 cut(s) 165, 223
Hsp92II CATG 5 cut(s) 454, 535, 556, 654, 731
HspAI GCGC 1 cut(s) 638
Kzo9I GATC 2 cut(s) 302, 408
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 7 cut(s) 49, 76, 199, 368, 480, 507, 803
LweI GCATC 3 cut(s) 217, 352, 596
MaeI CTAG 3 cut(s) 72, 470, 785
MaeII ACGT 2 cut(s) 165, 223
MaeIII GTNAC 2 cut(s) 113, 242
MalI GATC 2 cut(s) 304, 410
MboI GATC 2 cut(s) 302, 408
MboII GAAGA 4 cut(s) 96, 383, 541, 804
MfeI CAATTG 2 cut(s) 174, 582
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 85, 141, 450
MluCI AATT 5 cut(s) 36, 174, 582, 658, 721
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 2 cut(s) 489, 600
MslI CAYNNNNRTG 1 cut(s) 732
MspR9I CCNGG 2 cut(s) 64, 495
MunI CAATTG 2 cut(s) 174, 582
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 2 cut(s) 64, 495
MvnI CGCG 2 cut(s) 11, 132
MwoI GCNNNNNNNGC 2 cut(s) 227, 850
NcoI CCATGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 404
NdeII GATC 2 cut(s) 302, 408
NlaIII CATG 5 cut(s) 454, 535, 556, 654, 731
NlaIV GGNNCC 4 cut(s) 43, 68, 150, 410
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 242
NruI TCGCGA 1 cut(s) 132
NspI RCATGY 1 cut(s) 654
NspV TTCGAA 1 cut(s) 97
PaeI GCATGC 1 cut(s) 654
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 662
PfoI TCCNGGA 2 cut(s) 62, 493
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 224
Psp124BI GAGCTC 2 cut(s) 85, 141
Psp6I CCWGG 2 cut(s) 62, 493
PspCI CACGTG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 62, 493
PspN4I GGNNCC 4 cut(s) 43, 68, 150, 410
PspPI GGNCC 3 cut(s) 42, 149, 170
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 408
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 3 cut(s) 51, 606, 757
RsaNI GTAC 3 cut(s) 50, 605, 756
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 2 cut(s) 85, 141
SaqAI TTAA 2 cut(s) 489, 600
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 302, 408
Sau96I GGNCC 3 cut(s) 42, 149, 170
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 64, 495
SduI GDGCHC 3 cut(s) 85, 141, 450
SfaNI GCATC 3 cut(s) 217, 352, 596
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 732
SphI GCATGC 1 cut(s) 654
Sse9I AATT 5 cut(s) 36, 174, 582, 658, 721
SsiI CCGC 3 cut(s) 9, 29, 183
SspMI CTAG 3 cut(s) 72, 470, 785
SstI GAGCTC 2 cut(s) 85, 141
StyD4I CCNGG 2 cut(s) 62, 493
StyI CCWWGG 2 cut(s) 450, 759
TaaI ACNGT 6 cut(s) 49, 158, 215, 239, 348, 463
TaiI ACGT 2 cut(s) 168, 226
TaqI TCGA 3 cut(s) 97, 107, 305
TasI AATT 5 cut(s) 36, 174, 582, 658, 721
TatI WGTACW 1 cut(s) 604
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 489, 600
Tru9I TTAA 2 cut(s) 489, 600
TscAI CASTG 2 cut(s) 244, 466
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 541
TspGWI ACGGA 3 cut(s) 82, 93, 743
TspRI CASTG 2 cut(s) 244, 466
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 42
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 3 cut(s) 72, 470, 785
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.