Rh5AG429200

PGR5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012056
Physical Location & Seq
Forward (+)
73850118 .. 73852411
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG429200.1

Sequence Viewer

Length: 672 bp
ATGGCGGGCACGGGCGCCTCCTTCGCCCCCCACCACTTAATCGGGTCCACCGTCCCCGAAAGTTCCAGAACCCTCCGAACCGGAGCTCCATTCTCCGCTCGTATCTCCGCCAGCGGCAGCCACCTCGCCACCACTCCCGACGACCCCGCCGCCGGCCCCTCCTGCATCTACGTCGGCCCAATCGAAACCGCCAGCAAAGAAACCCTCGAAGCCCTCTACCGTCAAGCACGTGATGCGTACTACAGTGGCGACCCTTTGATAGTTGATGACATGTTTGATAGAGTAGAGTTGAAGTTGAGATGGTACGGTTCGAAATGCGTGGTGAAATACCCCCGTTGCAGTCTCCGGCGACAGTCGGCTTACTCCGATGCTGAGGCAGACGTATCACAGGTTTTTGCATTAGCGAGCATATGGATACTCATTCTTGCGTTTGGCACTGGATCGTTTCTCATGCCCATATTATACACTGTTGGCCTAGCTTATCAAAATGCATTCAGTCCAGGACTTTCTTATGTAAATCCAGCTGCTAGTCTTTCCATGCTGAATAGCATTCTCTTTATGATAGTCGGTTCTGTCGTTGGTCTCCCTATTGCATCTGCTTCGGGTAAGTTAATCTGCATCCATTATACTAGTGAATTCTGTTGTCAAATATGGAAAATTGAAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.04

Weight (kDa)

6.4

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59400 AT5G59400
fragaria_vesca FvH4_3g36480 FvH4_3g36480
malus_domestica MD03G1090200.v1.1 MD11G1099800.v1.1
prunus_persica Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1 Prupe.6G074400_v2.0.a1
pyrus_communis pycom03g07180
rosa_chinensis RchiOBHm_Chr5g0065341
rosa_laevigata RLG00000035784
rosa_roxburghii Rroxscaffold_1G00015850
rosa_rugosa Rorug05G0371300
rosa_samantha Rh5AG429200 Rh5BG444500 Rh5CG466800 Rh5DG456800
rosa_wichuraiana Rw5G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 7 cut(s) 5, 96, 108, 114, 147, 150, 189
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 1 cut(s) 635
AcvI CACGTG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 239, 305
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 2 cut(s) 292, 662
AhlI ACTAGT 1 cut(s) 629
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 3 cut(s) 86, 479, 524
AluI AGCT 3 cut(s) 86, 479, 524
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 347, 587
AlwI GGATC 1 cut(s) 448
AoxI GGCC 3 cut(s) 154, 175, 472
ApeKI GCWGC 2 cut(s) 117, 524
ApoI RAATTY 1 cut(s) 635
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 45, 155, 176
AsuHPI GGTGA 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 88
BbrPI CACGTG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 129, 511
BccI CCATC 1 cut(s) 294
BcgI CGANNNNNNTGC 6 cut(s) 106, 140, 154, 188, 582, 616
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 347, 587
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 3 cut(s) 476, 528, 630
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 408
BisI GCNGC 4 cut(s) 115, 118, 150, 525
BlsI GCNGC 4 cut(s) 116, 119, 151, 526
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 45, 155, 176
BmiI GGNNCC 3 cut(s) 16, 46, 157
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 5 cut(s) 174, 223, 358, 602, 627
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 587
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 442
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 129, 511
BshFI GGCC 3 cut(s) 156, 177, 474
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 81, 153, 346
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 347, 587
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 491, 549
BsnI GGCC 3 cut(s) 156, 177, 474
Bso31I GGTCTC 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 11, 88
Bsp143I GATC 1 cut(s) 440
BspACI CCGC 7 cut(s) 5, 96, 108, 114, 147, 150, 189
BspANI GGCC 3 cut(s) 156, 177, 474
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 16, 46, 157
BspPI GGATC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 1 cut(s) 440
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 6 cut(s) 52, 221, 245, 308, 354, 469
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 5 cut(s) 7, 112, 154, 193, 406
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 2 cut(s) 347, 587
BstMBI GATC 1 cut(s) 440
BstMWI GCNNNNNNNGC 3 cut(s) 23, 162, 233
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 129, 511
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 3 cut(s) 156, 177, 474
BtsCI GGATG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 250, 435, 465
Cac8I GCNNGC 5 cut(s) 7, 112, 154, 193, 406
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 45, 155, 176
Csp6I GTAC 2 cut(s) 238, 304
CviAII CATG 3 cut(s) 271, 451, 538
CviJI RGCY 9 cut(s) 86, 120, 156, 177, 212, 359, 474, 479, 524
CviKI_1 RGCY 9 cut(s) 86, 120, 156, 177, 212, 359, 474, 479, 524
CviQI GTAC 2 cut(s) 238, 304
DdeI CTNAG 1 cut(s) 372
DinI GGCGCC 1 cut(s) 16
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
FaeI CATG 3 cut(s) 274, 454, 541
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 270, 450, 537
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 410
Fnu4HI GCNGC 4 cut(s) 115, 118, 150, 525
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 4 cut(s) 115, 118, 150, 525
FspBI CTAG 3 cut(s) 476, 528, 630
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 115, 118, 150, 525
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 156, 177, 474
HapII CCGG 3 cut(s) 81, 153, 346
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 274, 454, 541
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 3 cut(s) 81, 153, 346
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 77, 367
Hpy188III TCNNGA 2 cut(s) 66, 137
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 143, 176
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 6 cut(s) 52, 221, 245, 308, 354, 469
HpyCH4IV ACGT 3 cut(s) 171, 229, 381
HpyCH4V TGCA 6 cut(s) 165, 339, 398, 491, 593, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 162, 233
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 3 cut(s) 171, 229, 381
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 274, 454, 541
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 83, 91
Lsp1109I GCAGC 2 cut(s) 129, 511
LweI GCATC 5 cut(s) 174, 223, 358, 602, 627
MaeI CTAG 3 cut(s) 476, 528, 630
MaeII ACGT 3 cut(s) 171, 229, 381
MalI GATC 1 cut(s) 442
MbiI CCGCTC 1 cut(s) 98
MboI GATC 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 11, 88
MluCI AATT 2 cut(s) 635, 657
Mly113I GGCGCC 1 cut(s) 15
MnlI CCTC 7 cut(s) 28, 83, 134, 169, 215, 224, 367
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 2 cut(s) 38, 611
MspA1I CMGCKG 2 cut(s) 114, 524
MspI CCGG 3 cut(s) 81, 153, 346
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 491, 549
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 23, 162, 233
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 15
NdeI CATATG 1 cut(s) 410
NdeII GATC 1 cut(s) 440
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 3 cut(s) 274, 454, 541
NlaIV GGNNCC 3 cut(s) 16, 46, 157
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 311
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 180, 573
PctI GAATGC 2 cut(s) 491, 549
PdiI GCCGGC 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 116, 119, 151, 526
PluTI GGCGCC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 499
PspCI CACGTG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 16, 46, 157
PspPI GGNCC 3 cut(s) 45, 155, 176
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 239, 305
RsaNI GTAC 2 cut(s) 238, 304
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 38, 611
SatI GCNGC 4 cut(s) 115, 118, 150, 525
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 3 cut(s) 45, 155, 176
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 2 cut(s) 11, 88
SetI ASST 8 cut(s) 88, 126, 174, 232, 384, 393, 481, 526
SfaNI GCATC 5 cut(s) 174, 223, 358, 602, 627
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 311
SinI GGWCC 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 2 cut(s) 635, 657
SsiI CCGC 7 cut(s) 5, 96, 108, 114, 147, 150, 189
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 3 cut(s) 476, 528, 630
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 6 cut(s) 52, 221, 245, 308, 354, 469
TaiI ACGT 3 cut(s) 174, 232, 384
TaqI TCGA 3 cut(s) 183, 207, 311
TasI AATT 2 cut(s) 635, 657
TauI GCSGC 2 cut(s) 117, 152
Tru1I TTAA 2 cut(s) 38, 611
Tru9I TTAA 2 cut(s) 38, 611
TscAI CASTG 3 cut(s) 250, 442, 472
TseI GCWGC 2 cut(s) 117, 524
TspRI CASTG 3 cut(s) 250, 442, 472
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 635
XceI RCATGY 1 cut(s) 274
XspI CTAG 3 cut(s) 476, 528, 630
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.