AT5G59410

Rab5-interacting protein (Rab5ip)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015391
Physical Location & Seq
Reverse (-)
23959573 .. 23960988
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59410.1

Sequence Viewer

Length: 393 bp
ATGAAAGAATCGAAATCAGCCAAGCTGAATCAGCTACAACAACAAGAGAATCACCAGAATGCTCACTTGTCTCCATCGAAATTAGCGAAATTGTTCGATCCCGATGCTTCTTGGGACAAGGATCAATTAGGAGATGTGTTACATTGGATTCGACAAGTGGTGGGATTGATCTCTGGATTGTTATGGGGCTCTATTCCACTTGTTGGAGGCATTTGGATCATTCTGTTTTTGGCGATATCCTCTGGGATAGTTTATGGTTACTACGCAATGATTCTCAAGGTTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGGGTCTCTTTGCGTCACTTACTCTCTTTTTGCTCGCATGGATTCTTGTCTATAGCTTGGCACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

130

Amino Acids

14.49

Weight (kDa)

5.61

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 46 - 125 7.3e-17 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AclWI GGATC 3 cut(s) 92, 129, 224
AfiI CCNNNNNNNGG 1 cut(s) 203
AluBI AGCT 4 cut(s) 25, 34, 311, 378
AluI AGCT 4 cut(s) 25, 34, 311, 378
Alw26I GTCTC 2 cut(s) 75, 332
AlwI GGATC 3 cut(s) 92, 129, 224
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 44
BanII GRGCYC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 2 cut(s) 75, 332
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 75, 332
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 4 cut(s) 97, 121, 168, 216
BspANI GGCC 1 cut(s) 303
BspPI GGATC 3 cut(s) 92, 129, 224
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 273
BssMI GATC 4 cut(s) 97, 121, 168, 216
BstC8I GCNNGC 1 cut(s) 357
BstKTI GATC 4 cut(s) 100, 124, 171, 219
BstMAI GTCTC 2 cut(s) 75, 332
BstMBI GATC 4 cut(s) 97, 121, 168, 216
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 357
CseI GACGC 1 cut(s) 324
CviAII CATG 1 cut(s) 360
CviJI RGCY 7 cut(s) 20, 25, 34, 189, 303, 311, 378
CviKI_1 RGCY 7 cut(s) 20, 25, 34, 189, 303, 311, 378
DpnI GATC 4 cut(s) 99, 123, 170, 218
DpnII GATC 4 cut(s) 97, 121, 168, 216
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 237
EcoRV GATATC 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 1 cut(s) 363
FaiI YATR 4 cut(s) 184, 255, 361, 375
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 303
HgaI GACGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 363
HinfI GANTC 6 cut(s) 8, 28, 49, 148, 271, 364
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 299, 392
Hpy188III TCNNGA 2 cut(s) 101, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
Hsp92II CATG 1 cut(s) 363
Kzo9I GATC 4 cut(s) 97, 121, 168, 216
LpnPI CCDG 3 cut(s) 68, 159, 228
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 138, 257, 336
MalI GATC 4 cut(s) 99, 123, 170, 218
MboI GATC 4 cut(s) 97, 121, 168, 216
MboII GAAGA 2 cut(s) 299, 302
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 3 cut(s) 80, 89, 125
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 4 cut(s) 200, 250, 293, 316
MroXI GAANNNNTTC 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 4 cut(s) 97, 121, 168, 216
NlaIII CATG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 6 cut(s) 8, 28, 49, 148, 271, 364
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 4 cut(s) 97, 121, 168, 216
SduI GDGCHC 1 cut(s) 191
SetI ASST 5 cut(s) 27, 36, 282, 313, 380
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 3 cut(s) 80, 89, 125
TaqI TCGA 4 cut(s) 11, 77, 96, 151
TasI AATT 3 cut(s) 80, 89, 125
TfiI GAWTC 6 cut(s) 8, 28, 49, 148, 271, 364
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 17, 300
Van91I CCANNNNNTGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.