FvH4_3g36490

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015391
Physical Location & Seq
Reverse (-)
31255899 .. 31258648
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36490.t1

Sequence Viewer

Length: 390 bp
ATGAAAGAAGCGAAAGCGAACGGTCAGTATCAGCAGACGCAGCAGCACCAGAACGGCGGTCACTTGTCTCCGTTCAAGTTCGCCAAGTTGCTCGATCCAGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATTCGACAAGGCGTGGCGCTTGTGTGTGGGCTACTATGGGGTGCGGTGCCCTTGGTAGGAGGCATATGGTTTCTCCTTTTTCTCGCGTTATCCACTGGGATTATATATGGCTACTATGCGATGATACTGAAGGTTGATGAAGAAGAATTTGGCGGTCATGGAGCTCTCCTCCAAGAGGGACTTTTTGCATCTACAACTCTTTTTCTGCTTGCATGGGTTCTAGTATACAGCTTGGGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

5.61

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 45 - 124 1.2e-16 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 369
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 57, 188, 297
AclWI GGATC 2 cut(s) 89, 126
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 200, 319
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 3 cut(s) 104, 308, 375
AluI AGCT 3 cut(s) 104, 308, 375
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 2 cut(s) 89, 126
ApeKI GCWGC 2 cut(s) 40, 43
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 52, 55
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 2 cut(s) 41, 44
BlsI GCNGC 2 cut(s) 42, 45
Bme1390I CCNGG 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 297, 329
BsaJI CCNNGG 2 cut(s) 108, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 319
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 108, 195
BseLI CCNNNNNNNGG 2 cut(s) 200, 319
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 52, 55
Bsh1236I CGCG 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 310
BslFI GGGAC 2 cut(s) 125, 336
BslI CCNNNNNNNGG 2 cut(s) 200, 319
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 2 cut(s) 125, 336
Bsp1286I GDGCHC 2 cut(s) 195, 310
Bsp143I GATC 2 cut(s) 94, 118
BspACI CCGC 3 cut(s) 57, 188, 297
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 89, 126
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 108, 195
BssMI GATC 2 cut(s) 94, 118
BssNAI GTATAC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 354
BstENI CCTNNNNNAGG 1 cut(s) 317
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 97, 121
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 94, 118
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 52, 55
BstZ17I GTATAC 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 163
CseI GACGC 1 cut(s) 46
CviAII CATG 2 cut(s) 302, 357
CviJI RGCY 5 cut(s) 104, 175, 255, 308, 375
CviKI_1 RGCY 5 cut(s) 104, 175, 255, 308, 375
DpnI GATC 2 cut(s) 96, 120
DpnII GATC 2 cut(s) 94, 118
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 305, 360
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 125, 336
FatI CATG 2 cut(s) 301, 356
FauNDI CATATG 1 cut(s) 209
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 41, 44
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 41, 44
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 41, 44
HaeII RGCGCY 1 cut(s) 164
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 305, 360
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 389
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 139, 332, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 305, 360
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 94, 118
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 62, 94, 111, 121, 225
Lsp1109I GCAGC 2 cut(s) 52, 55
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 96, 120
MboI GATC 2 cut(s) 94, 118
MboII GAAGA 2 cut(s) 296, 299
MfeI CAATTG 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 195, 310
MluCI AATT 2 cut(s) 122, 290
MnlI CCTC 3 cut(s) 197, 313, 323
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 209
NdeII GATC 2 cut(s) 94, 118
NlaIII CATG 2 cut(s) 305, 360
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 42, 45
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 192
SacI GAGCTC 1 cut(s) 310
SatI GCNGC 2 cut(s) 41, 44
Sau3AI GATC 2 cut(s) 94, 118
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 195, 310
SetI ASST 4 cut(s) 106, 279, 310, 377
SfaNI GCATC 1 cut(s) 341
Sse9I AATT 2 cut(s) 122, 290
SsiI CCGC 3 cut(s) 57, 188, 297
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 93, 148
TasI AATT 2 cut(s) 122, 290
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 40, 43
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 17, 297
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 317
XapI RAATTY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.