Rh5CG466900

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015391
Physical Location & Seq
Reverse (-)
65060071 .. 65061986
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG466900.1

Sequence Viewer

Length: 384 bp
ATGAAAGAAGCGAAAGCCAACGGTCAGTACCAGCAGCACCAGAACGGCGGTGCCCACTTGTCGCCGTTCAAATTCGCCAAGTTGTTCGATCCAGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAGGGCATGGCCCTCGTGTGTGGGCTGCTATGGGGTGCGGTACCCTTGGTAGGAGGCATATGGTTCATCCTTTTTCTCTTGTTATCCACTGGGATTATATATGGCTACTATGCGATGATACTGAAGGTTGATGAAGAAGAATTTGGCGGTCATGGAGCTCTCCTCCAAGAGGGACTTTTTGCATCCATAACTCTTTTTCTGCTTGCATGGGTTCTAGTATACAGCTTGGGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

5.61

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 43 - 122 3.1e-17 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 184
AccB1I GGYRCC 2 cut(s) 50, 184
AccI GTMKAC 1 cut(s) 363
AciI CCGC 3 cut(s) 48, 182, 291
AclWI GGATC 2 cut(s) 83, 120
AcsI RAATTY 2 cut(s) 71, 284
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 2 cut(s) 29, 186
AfiI CCNNNNNNNGG 2 cut(s) 194, 313
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 3 cut(s) 98, 302, 369
AluI AGCT 3 cut(s) 98, 302, 369
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 2 cut(s) 83, 120
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 34, 169
ApoI RAATTY 2 cut(s) 71, 284
Asp718I GGTACC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 50, 184
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 46, 156
BceAI ACGGC 2 cut(s) 49, 61
BcgI CGANNNNNNTGC 4 cut(s) 122, 139, 156, 173
BciT130I CCWGG 1 cut(s) 103
BfaI CTAG 1 cut(s) 359
BisI GCNGC 2 cut(s) 35, 170
BlsI GCNGC 2 cut(s) 36, 171
Bme1390I CCNGG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 52, 186
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BsaJI CCNNGG 2 cut(s) 102, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 313
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 102, 189
BseGI GGATG 2 cut(s) 210, 326
BseLI CCNNNNNNNGG 2 cut(s) 194, 313
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 46, 156
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 50, 184
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 2 cut(s) 119, 330
BslI CCNNNNNNNGG 2 cut(s) 194, 313
BsmFI GGGAC 2 cut(s) 119, 330
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 55, 304
Bsp143I GATC 2 cut(s) 88, 112
BspACI CCGC 3 cut(s) 48, 182, 291
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 52, 186
BspPI GGATC 2 cut(s) 83, 120
BspT107I GGYRCC 2 cut(s) 50, 184
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 102, 189
BssMI GATC 2 cut(s) 88, 112
BssNAI GTATAC 1 cut(s) 364
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 189
Bst1107I GTATAC 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 348
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 210, 326
BstKTI GATC 2 cut(s) 91, 115
BstMBI GATC 2 cut(s) 88, 112
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 46, 156
BstZ17I GTATAC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 210, 326
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 28, 185
CviAII CATG 3 cut(s) 151, 296, 351
CviJI RGCY 7 cut(s) 17, 98, 155, 169, 249, 302, 369
CviKI_1 RGCY 7 cut(s) 17, 98, 155, 169, 249, 302, 369
CviQI GTAC 2 cut(s) 28, 185
DpnI GATC 2 cut(s) 90, 114
DpnII GATC 2 cut(s) 88, 112
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 154, 299, 354
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 2 cut(s) 119, 330
FatI CATG 3 cut(s) 150, 295, 350
FauNDI CATATG 1 cut(s) 203
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 35, 170
FokI GGATG 2 cut(s) 197, 313
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 35, 170
FspBI CTAG 1 cut(s) 359
GluI GCNGC 2 cut(s) 35, 170
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 3 cut(s) 154, 299, 354
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 133, 326, 350
Hsp92II CATG 3 cut(s) 154, 299, 354
KpnI GGTACC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 88, 112
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 44, 53, 88, 105, 115, 131, 219
Lsp1109I GCAGC 2 cut(s) 46, 156
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 359
MalI GATC 2 cut(s) 90, 114
MboI GATC 2 cut(s) 88, 112
MboII GAAGA 2 cut(s) 290, 293
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 55, 304
MluCI AATT 3 cut(s) 71, 116, 284
MnlI CCTC 4 cut(s) 167, 191, 307, 317
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 103
NdeI CATATG 1 cut(s) 203
NdeII GATC 2 cut(s) 88, 112
NlaIII CATG 3 cut(s) 154, 299, 354
NlaIV GGNNCC 2 cut(s) 52, 186
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 36, 171
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 52, 186
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 29, 186
RsaNI GTAC 2 cut(s) 28, 185
SacI GAGCTC 1 cut(s) 304
SatI GCNGC 2 cut(s) 35, 170
Sau3AI GATC 2 cut(s) 88, 112
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 55, 304
SetI ASST 4 cut(s) 100, 273, 304, 371
SfaNI GCATC 1 cut(s) 335
Sse9I AATT 3 cut(s) 71, 116, 284
SsiI CCGC 3 cut(s) 48, 182, 291
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 87, 142
TasI AATT 3 cut(s) 71, 116, 284
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 238
TseI GCWGC 2 cut(s) 34, 169
TspDTI ATGAA 3 cut(s) 17, 199, 291
TspRI CASTG 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 2 cut(s) 71, 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.