Rroxscaffold_1G00015840

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015391
Physical Location & Seq
Forward (+)
19726468 .. 19728849
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015840.1

Sequence Viewer

Length: 393 bp
ATGAAAGAAGCGAAGGCCAACGGTCAGTACCAGCAGCCGCAGCAGCACCAGAACGGCGGCGCCCACTTGTCGCCGTTCAAATTCGCCAAGTTGTTCGATCCAGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAAGGCATGGCCCTTGTGTGTGGGCTGCTATGGGGTGCGGTACCCTTGGTAGGAGGCCTATGGTTCATCCTTTTTCTCGTGTTATCCACTGGGATTATATATGGCTACTATGCAATGATACTGAAGGTTGACGAAGAAGAATTTGGCGGTCATGGAGCTCTCCTCCAAGAGGGACTTTTTGCATCCGTAACTCTTTTTCTGCTTGCATGGGTTCTAGTATACAGCTTGGGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

130

Amino Acids

14.48

Weight (kDa)

5.61

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 46 - 125 3.3e-17 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 193
AccB1I GGYRCC 2 cut(s) 59, 193
AccI GTMKAC 1 cut(s) 372
AciI CCGC 4 cut(s) 38, 57, 191, 300
AclWI GGATC 2 cut(s) 92, 129
AcsI RAATTY 2 cut(s) 80, 293
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 2 cut(s) 29, 195
AfiI CCNNNNNNNGG 2 cut(s) 203, 322
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 3 cut(s) 107, 311, 378
AluI AGCT 3 cut(s) 107, 311, 378
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 2 cut(s) 92, 129
AoxI GGCC 3 cut(s) 15, 162, 208
ApeKI GCWGC 4 cut(s) 34, 40, 43, 178
ApoI RAATTY 2 cut(s) 80, 293
Asp718I GGTACC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 163
BanI GGYRCC 2 cut(s) 59, 193
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 4 cut(s) 46, 52, 55, 165
BceAI ACGGC 2 cut(s) 58, 70
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 6 cut(s) 35, 38, 41, 44, 58, 179
BlsI GCNGC 6 cut(s) 36, 39, 42, 45, 59, 180
Bme1390I CCNGG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 61, 195
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 344
BmuI ACTGGG 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 300, 332
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 111, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 322
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 111, 198
BseGI GGATG 2 cut(s) 219, 335
BseLI CCNNNNNNNGG 2 cut(s) 203, 322
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 4 cut(s) 46, 52, 55, 165
BshFI GGCC 3 cut(s) 17, 164, 210
BshNI GGYRCC 2 cut(s) 59, 193
BsiHKAI GWGCWC 1 cut(s) 313
BslFI GGGAC 2 cut(s) 128, 339
BslI CCNNNNNNNGG 2 cut(s) 203, 322
BsmFI GGGAC 2 cut(s) 128, 339
BsnI GGCC 3 cut(s) 17, 164, 210
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 97, 121
BspACI CCGC 4 cut(s) 38, 57, 191, 300
BspANI GGCC 3 cut(s) 17, 164, 210
BspLI GGNNCC 2 cut(s) 61, 195
BspPI GGATC 2 cut(s) 92, 129
BspT107I GGYRCC 2 cut(s) 59, 193
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 111, 198
BssMI GATC 2 cut(s) 97, 121
BssNAI GTATAC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 357
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 219, 335
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 100, 124
BstMBI GATC 2 cut(s) 97, 121
BstMWI GCNNNNNNNGC 2 cut(s) 40, 43
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstV1I GCAGC 4 cut(s) 46, 52, 55, 165
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 17, 164, 210
BtsCI GGATG 2 cut(s) 219, 335
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 28, 194
CviAII CATG 3 cut(s) 160, 305, 360
CviJI RGCY 9 cut(s) 17, 37, 107, 164, 178, 210, 258, 311, 378
CviKI_1 RGCY 9 cut(s) 17, 37, 107, 164, 178, 210, 258, 311, 378
CviQI GTAC 2 cut(s) 28, 194
DinI GGCGCC 1 cut(s) 61
DpnI GATC 2 cut(s) 99, 123
DpnII GATC 2 cut(s) 97, 121
Ecl136II GAGCTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 163, 308, 363
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 128, 339
FatI CATG 3 cut(s) 159, 304, 359
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 6 cut(s) 35, 38, 41, 44, 58, 179
FokI GGATG 2 cut(s) 206, 322
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 6 cut(s) 35, 38, 41, 44, 58, 179
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 61
GluI GCNGC 6 cut(s) 35, 38, 41, 44, 58, 179
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 3 cut(s) 17, 164, 210
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 163, 308, 363
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 283, 373
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 283, 373
HpyAV CCTTC 2 cut(s) 7, 271
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 142, 266, 335, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 43
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 163, 308, 363
HspAI GCGC 1 cut(s) 60
KasI GGCGCC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 97, 121
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 6 cut(s) 44, 62, 97, 114, 124, 228
Lsp1109I GCAGC 4 cut(s) 46, 52, 55, 165
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 340
MalI GATC 2 cut(s) 99, 123
MboI GATC 2 cut(s) 97, 121
MboII GAAGA 2 cut(s) 299, 302
MfeI CAATTG 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 80, 125, 293
Mly113I GGCGCC 1 cut(s) 60
MnlI CCTC 3 cut(s) 200, 316, 326
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 40, 43
NarI GGCGCC 1 cut(s) 60
NdeII GATC 2 cut(s) 97, 121
NlaIII CATG 3 cut(s) 163, 308, 363
NlaIV GGNNCC 2 cut(s) 61, 195
PceI AGGCCT 1 cut(s) 210
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 6 cut(s) 36, 39, 42, 45, 59, 180
PluTI GGCGCC 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 61, 195
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 2 cut(s) 29, 195
RsaNI GTAC 2 cut(s) 28, 194
SacI GAGCTC 1 cut(s) 313
SatI GCNGC 6 cut(s) 35, 38, 41, 44, 58, 179
Sau3AI GATC 2 cut(s) 97, 121
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 313
SetI ASST 4 cut(s) 109, 282, 313, 380
SfaNI GCATC 1 cut(s) 344
SfoI GGCGCC 1 cut(s) 61
Sse9I AATT 3 cut(s) 80, 125, 293
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 4 cut(s) 38, 57, 191, 300
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 313
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 96, 151
TasI AATT 3 cut(s) 80, 125, 293
TauI GCSGC 2 cut(s) 40, 60
TfiI GAWTC 1 cut(s) 148
TscAI CASTG 1 cut(s) 247
TseI GCWGC 4 cut(s) 34, 40, 43, 178
TspDTI ATGAA 2 cut(s) 17, 208
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 2 cut(s) 80, 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.