pycom03g07170

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015391
Physical Location & Seq
Forward (+)
5725238 .. 5726937
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07170.2

Sequence Viewer

Length: 411 bp
ATGAAAGAAGGTAAATCAGTGAAATTGAACGGTCAACAGCAGCAGTCGCAGCAGCACCAGAACGGTCACTTGTCGCCGTTCAAATTCGCCAAGTTGTTGGATCCGGAAGCTACGTGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAAGCAATGGCCCTCACATGCGGGCTGCTGTGGGGTGCAATACCGTTGGTCGGAGGTATATGGTTCGTCATTTTTCTGGTGATATCAACTGGAATTATATATGGCTATTATGCAATGGTACTAAAGGTTGACGAAGAAGACTTTGGTGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTCGCTTCTATAACTCTTTTTCTGGTAGTTTTCATACTTTTAAAGGCCGCTGTCCCCTTGAGAAATTACCTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

137

Amino Acids

15.17

Weight (kDa)

6.39

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 2 cut(s) 177, 381
AclWI GGATC 3 cut(s) 95, 108, 132
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 28, 82
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 110, 314
AluI AGCT 2 cut(s) 110, 314
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 3 cut(s) 95, 108, 132
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 165, 378
ApeKI GCWGC 4 cut(s) 40, 49, 52, 181
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 247
BamHI GGATCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 4 cut(s) 52, 61, 64, 168
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BisI GCNGC 5 cut(s) 41, 50, 53, 182, 381
BlsI GCNGC 5 cut(s) 42, 51, 54, 183, 382
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 303, 335
BsaAI YACGTR 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 2 cut(s) 168, 276
BseAI TCCGGA 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 168, 276
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 4 cut(s) 52, 61, 64, 168
BshFI GGCC 2 cut(s) 167, 380
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 131, 371
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 131, 371
BsnI GGCC 2 cut(s) 167, 380
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 100, 124
BspACI CCGC 2 cut(s) 177, 381
BspANI GGCC 2 cut(s) 167, 380
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 3 cut(s) 95, 108, 132
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 168, 276
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 100, 124
Bst4CI ACNGT 3 cut(s) 32, 65, 201
Bst6I CTCTTC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 179
BstKTI GATC 2 cut(s) 103, 127
BstMBI GATC 2 cut(s) 100, 124
BstMWI GCNNNNNNNGC 2 cut(s) 46, 49
BstNSI RCATGY 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 52, 61, 64, 168
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 167, 380
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 174, 308
CviJI RGCY 7 cut(s) 110, 167, 181, 261, 314, 331, 380
CviKI_1 RGCY 7 cut(s) 110, 167, 181, 261, 314, 331, 380
CviQI GTAC 1 cut(s) 275
DpnI GATC 2 cut(s) 102, 126
DpnII GATC 2 cut(s) 100, 124
DraI TTTAAA 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoRV GATATC 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 177, 311
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 2 cut(s) 131, 371
FatI CATG 2 cut(s) 173, 307
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 5 cut(s) 41, 50, 53, 182, 381
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 5 cut(s) 41, 50, 53, 182, 381
GluI GCNGC 5 cut(s) 41, 50, 53, 182, 381
HaeIII GGCC 2 cut(s) 167, 380
HapII CCGG 1 cut(s) 104
Hin1II CATG 2 cut(s) 177, 311
HincII GTYRAC 2 cut(s) 35, 286
HindII GTYRAC 2 cut(s) 35, 286
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 35, 286
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 35, 286
HpyCH4III ACNGT 3 cut(s) 32, 65, 201
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 145, 194, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 49
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 2 cut(s) 177, 311
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 100, 124
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 5 cut(s) 71, 117, 218, 231, 341
Lsp1109I GCAGC 4 cut(s) 52, 61, 64, 168
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 65
MalI GATC 2 cut(s) 102, 126
MboI GATC 2 cut(s) 100, 124
MboII GAAGA 3 cut(s) 302, 305, 308
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 5 cut(s) 23, 83, 128, 249, 397
MmeI TCCRAC 2 cut(s) 78, 187
MnlI CCTC 3 cut(s) 179, 203, 319
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 46, 49
NdeII GATC 2 cut(s) 100, 124
NlaIII CATG 2 cut(s) 177, 311
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 5 cut(s) 42, 51, 54, 183, 382
Ppu21I YACGTR 1 cut(s) 114
PsiI TTATAA 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 5 cut(s) 41, 50, 53, 182, 381
Sau3AI GATC 2 cut(s) 100, 124
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 316
SetI ASST 7 cut(s) 13, 112, 116, 214, 285, 316, 405
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse9I AATT 5 cut(s) 23, 83, 128, 249, 397
SsiI CCGC 2 cut(s) 177, 381
SstI GAGCTC 1 cut(s) 316
TaaI ACNGT 3 cut(s) 32, 65, 201
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 154
TasI AATT 5 cut(s) 23, 83, 128, 249, 397
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 4 cut(s) 40, 49, 52, 181
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 17, 355
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.