MD11G1099700.v1.1

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015391
Physical Location & Seq
Forward (+)
8340826 .. 8343049
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1099700.v1.1.491

Sequence Viewer

Length: 402 bp
ATGAAAGAAGGGAAATCAGTAAAATTGAACGGTCAACAGCAGCAGCCGCAGCCGCCGCAGCACCAGAACGGTCACTTGTCCCGGTTCAAATTCGCCAAGTTGTTGGATCCGGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAAGCAATGGCCCTCGCATGTGGGCTACTGTGGGGTGCAATACCATTGGTCGGAGGCATATGGTTCGTCATTTTTTTGGTAATATCAACTGGAATTATATATGGCTACTACGCAATGGTACTAAAGGTTGACGAAGAAGACTTCGGTGGCCATGGAGCTCTCCTCCAAGAGGGGCTTTTCGCTTCCATAACTCTTTTTCTGCTTGCCTGGATTCTAGTATACAGCTTGGGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

134

Amino Acids

14.87

Weight (kDa)

6.16

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 49 - 128 8.8e-18 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 3 cut(s) 47, 53, 56
AclWI GGATC 3 cut(s) 101, 114, 138
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 212, 331
AgsI TTSAA 2 cut(s) 28, 88
AjnI CCWGG 2 cut(s) 119, 368
AluBI AGCT 3 cut(s) 116, 320, 387
AluI AGCT 3 cut(s) 116, 320, 387
Alw21I GWGCWC 1 cut(s) 322
AlwI GGATC 3 cut(s) 101, 114, 138
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 2 cut(s) 171, 310
ApeKI GCWGC 4 cut(s) 40, 43, 49, 58
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 82
BalI TGGCCA 1 cut(s) 312
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 4 cut(s) 52, 55, 61, 70
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 208, 242
BciT130I CCWGG 2 cut(s) 121, 370
BcnI CCSGG 1 cut(s) 82
BfaI CTAG 1 cut(s) 377
BisI GCNGC 7 cut(s) 41, 44, 47, 50, 53, 56, 59
BlsI GCNGC 7 cut(s) 42, 45, 48, 51, 54, 57, 60
Bme1390I CCNGG 3 cut(s) 82, 121, 370
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 3 cut(s) 82, 121, 370
BpiI GAAGAC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 120, 313
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 331
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 2 cut(s) 174, 282
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 2 cut(s) 121, 370
BseDI CCNNGG 2 cut(s) 120, 313
BseLI CCNNNNNNNGG 2 cut(s) 212, 331
BseMI GCAATG 2 cut(s) 174, 282
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 4 cut(s) 52, 55, 61, 70
BshFI GGCC 2 cut(s) 173, 312
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 82, 110
BslFI GGGAC 2 cut(s) 64, 137
BslI CCNNNNNNNGG 2 cut(s) 212, 331
BsmFI GGGAC 2 cut(s) 64, 137
BsnI GGCC 2 cut(s) 173, 312
Bsp1286I GDGCHC 1 cut(s) 322
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 106, 130
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 3 cut(s) 47, 53, 56
BspANI GGCC 2 cut(s) 173, 312
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 3 cut(s) 101, 114, 138
BsrDI GCAATG 2 cut(s) 174, 282
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 120, 313
BssMI GATC 2 cut(s) 106, 130
BssNAI GTATAC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 2 cut(s) 121, 370
Bst4CI ACNGT 3 cut(s) 32, 71, 192
BstC8I GCNNGC 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 329
BstKTI GATC 2 cut(s) 109, 133
BstMBI GATC 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 52, 55, 58
BstNI CCWGG 2 cut(s) 121, 370
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 80, 119, 368
BstV1I GCAGC 4 cut(s) 52, 55, 61, 70
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 106
BstZ17I GTATAC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 173, 312
BtgI CCRYGG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 180, 314
CviQI GTAC 1 cut(s) 281
DpnI GATC 2 cut(s) 108, 132
DpnII GATC 2 cut(s) 106, 130
EaeI YGGCCR 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 119, 368
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 183, 317
FaiI YATR 9 cut(s) 181, 221, 223, 260, 262, 264, 315, 350, 382
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 64, 137
FatI CATG 2 cut(s) 179, 313
FauNDI CATATG 1 cut(s) 221
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 7 cut(s) 41, 44, 47, 50, 53, 56, 59
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 7 cut(s) 41, 44, 47, 50, 53, 56, 59
FspBI CTAG 1 cut(s) 377
GluI GCNGC 7 cut(s) 41, 44, 47, 50, 53, 56, 59
HaeIII GGCC 2 cut(s) 173, 312
HapII CCGG 2 cut(s) 82, 110
Hin1II CATG 2 cut(s) 183, 317
HincII GTYRAC 2 cut(s) 35, 292
HindII GTYRAC 2 cut(s) 35, 292
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 2 cut(s) 157, 373
HpaII CCGG 2 cut(s) 82, 110
Hpy166II GTNNAC 3 cut(s) 35, 292, 382
Hpy188I TCNGA 2 cut(s) 215, 401
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 3 cut(s) 35, 292, 382
HpyCH4III ACNGT 3 cut(s) 32, 71, 192
HpyCH4V TGCA 2 cut(s) 151, 200
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 52, 55, 58
Hsp92II CATG 2 cut(s) 183, 317
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 106, 130
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 8 cut(s) 77, 95, 106, 123, 133, 237, 355, 382
Lsp1109I GCAGC 4 cut(s) 52, 55, 61, 70
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 108, 132
MboI GATC 2 cut(s) 106, 130
MboII GAAGA 2 cut(s) 308, 311
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 4 cut(s) 23, 89, 134, 255
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 2 cut(s) 84, 193
MnlI CCTC 4 cut(s) 185, 209, 325, 335
Mox20I TGGCCA 1 cut(s) 312
MroI TCCGGA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 2 cut(s) 82, 110
MspR9I CCNGG 3 cut(s) 82, 121, 370
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 2 cut(s) 121, 370
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 52, 55, 58
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 221
NdeII GATC 2 cut(s) 106, 130
NlaIII CATG 2 cut(s) 183, 317
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 183
PfeI GAWTC 2 cut(s) 157, 373
PkrI GCNGC 7 cut(s) 42, 45, 48, 51, 54, 57, 60
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 119, 368
PspGI CCWGG 2 cut(s) 119, 368
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SacI GAGCTC 1 cut(s) 322
SatI GCNGC 7 cut(s) 41, 44, 47, 50, 53, 56, 59
Sau3AI GATC 2 cut(s) 106, 130
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 3 cut(s) 82, 121, 370
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 118, 291, 322, 389
Sse9I AATT 4 cut(s) 23, 89, 134, 255
SsiI CCGC 3 cut(s) 47, 53, 56
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 80, 119, 368
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 32, 71, 192
TaqI TCGA 1 cut(s) 160
TasI AATT 4 cut(s) 23, 89, 134, 255
TauI GCSGC 3 cut(s) 49, 55, 58
TfiI GAWTC 2 cut(s) 157, 373
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 40, 43, 49, 58
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.