Prupe.6G074300_v2.0.a1

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015391
Physical Location & Seq
Forward (+)
5081697 .. 5084953
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G074300.1

Sequence Viewer

Length: 399 bp
ATGAAAGAAGGGAAATCAGTGAAATTGAACGGTCAACTGCAGCAGCAGCAGCAGCAGCACCAGAACGGTCACTTGTCTCCGTTCAAATTCGCCAAGTTGTTGGATCCAGAAGCCTCATGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAAGCAATGGCCCTTGTATGTGGGCTACTATGGGGTGCGATACCGTTGGTTGGAGGCATATGGTTCATCATTTTTCTGGTCATATCTACCGGAATTATATATGGCTATTACGCAATGATACTAAATGTTGATGAAGAAGACTTTGGTGGCCATGGAGCTCTCCTCCAAGAGGGGCTTTTCGCTTCTATAACTCTTTTTCTGCTTGCCTGGATTCTAGTATACAGCTTGGGACACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

133

Amino Acids

14.8

Weight (kDa)

5.6

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 378
AclWI GGATC 3 cut(s) 98, 111, 135
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 209, 328
AgsI TTSAA 2 cut(s) 28, 85
AjnI CCWGG 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 317, 384
AluI AGCT 2 cut(s) 317, 384
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 3 cut(s) 98, 111, 135
AoxI GGCC 2 cut(s) 168, 307
ApeKI GCWGC 6 cut(s) 40, 43, 46, 49, 52, 55
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 309
BamHI GGATCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 6 cut(s) 52, 55, 58, 61, 64, 67
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 38
BisI GCNGC 6 cut(s) 41, 44, 47, 50, 53, 56
BlsI GCNGC 6 cut(s) 42, 45, 48, 51, 54, 57
Bme1390I CCNGG 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 328
Bse3DI GCAATG 2 cut(s) 171, 279
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 209, 328
BseMI GCAATG 2 cut(s) 171, 279
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 6 cut(s) 52, 55, 58, 61, 64, 67
BshFI GGCC 2 cut(s) 170, 309
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 209, 328
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 170, 309
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 103, 127
Bsp19I CCATGG 1 cut(s) 310
BspANI GGCC 2 cut(s) 170, 309
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 3 cut(s) 98, 111, 135
BsrDI GCAATG 2 cut(s) 171, 279
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 103, 127
BssNAI GTATAC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 310
Bst1107I GTATAC 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 3 cut(s) 32, 68, 204
BstC8I GCNNGC 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 326
BstKTI GATC 2 cut(s) 106, 130
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 103, 127
BstMWI GCNNNNNNNGC 4 cut(s) 46, 49, 52, 55
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 6 cut(s) 52, 55, 58, 61, 64, 67
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 170, 309
BtgI CCRYGG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 2 cut(s) 117, 311
CviJI RGCY 8 cut(s) 113, 170, 184, 264, 309, 317, 334, 384
CviKI_1 RGCY 8 cut(s) 113, 170, 184, 264, 309, 317, 334, 384
DpnI GATC 2 cut(s) 105, 129
DpnII GATC 2 cut(s) 103, 127
EaeI YGGCCR 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 120, 314
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 116, 310
FauNDI CATATG 1 cut(s) 218
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 6 cut(s) 41, 44, 47, 50, 53, 56
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 6 cut(s) 41, 44, 47, 50, 53, 56
FspBI CTAG 1 cut(s) 374
GluI GCNGC 6 cut(s) 41, 44, 47, 50, 53, 56
HaeIII GGCC 2 cut(s) 170, 309
HapII CCGG 1 cut(s) 249
Hin1II CATG 2 cut(s) 120, 314
HincII GTYRAC 1 cut(s) 35
HindII GTYRAC 1 cut(s) 35
HinfI GANTC 2 cut(s) 154, 370
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 35, 379
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 35, 379
HpyCH4III ACNGT 3 cut(s) 32, 68, 204
HpyCH4V TGCA 2 cut(s) 40, 148
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 49, 52, 55
Hsp92II CATG 2 cut(s) 120, 314
Kzo9I GATC 2 cut(s) 103, 127
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 74, 120, 221, 262, 352, 379
Lsp1109I GCAGC 6 cut(s) 52, 55, 58, 61, 64, 67
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 105, 129
MboI GATC 2 cut(s) 103, 127
MboII GAAGA 2 cut(s) 305, 308
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 319
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 4 cut(s) 23, 86, 131, 252
MluNI TGGCCA 1 cut(s) 309
MmeI TCCRAC 2 cut(s) 81, 190
MnlI CCTC 4 cut(s) 124, 206, 322, 332
Mox20I TGGCCA 1 cut(s) 309
MscI TGGCCA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 367
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 4 cut(s) 46, 49, 52, 55
NcoI CCATGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 218
NdeII GATC 2 cut(s) 103, 127
NlaIII CATG 2 cut(s) 120, 314
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 154, 370
PkrI GCNGC 6 cut(s) 42, 45, 48, 51, 54, 57
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 103
SacI GAGCTC 1 cut(s) 319
SatI GCNGC 6 cut(s) 41, 44, 47, 50, 53, 56
Sau3AI GATC 2 cut(s) 103, 127
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 319
SetI ASST 2 cut(s) 319, 386
SfcI CTRYAG 1 cut(s) 38
Sse9I AATT 4 cut(s) 23, 86, 131, 252
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 32, 68, 204
TaqI TCGA 1 cut(s) 157
TasI AATT 4 cut(s) 23, 86, 131, 252
TfiI GAWTC 2 cut(s) 154, 370
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 6 cut(s) 40, 43, 46, 49, 52, 55
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 17, 214, 306
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.