Rorug05G0371400

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015391
Physical Location & Seq
Forward (+)
49991692 .. 49993686
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0371400.1

Sequence Viewer

Length: 1995 bp
ATGAATTCTGGCCAAGTTATCAATAAAGCAAAGTCTTCTGTTTTTATTGGTAAGCATGCACGGCATAGAGCAATTATTATCCAGCGTCTACTTGGGTTCAGAGAAGGTGCGGTACCCTTCAACTATCTTGGGGTGCCAGTATTTCAAGGTAGACCGAAAGCAGCTTATTTCAGAATTATTGCTGATAAGGTTAGGTGTAAGCTAACATCCTGGAAGGGCCTGCAACTTTCTCAAGCAGCAAGACTACAACTTATTTCTGCTACCATACAAAGTCTTTTGATTTATAGTTTCCAAGTGTATGAGTGGCCTCATTCTTTGCTTCTTAAGGTTCAAGGGTGGACTCGGAATTTTTTCTGGACAGGAGACCCATTAAAAAAGGGTTCCAACCTTATAGCTTGGTCTAAATGTTGCACGCCAATTGATCAGGGTGGTCTTGGGTTGAAAAATCTCTTTCATCTAAATAGTGCTTTATTGCTCAAGCGTTGTTGGGAGGTGGTTGAAGGTTTGTCCCCATCTGCATGTTTTCTGAGGAGTAGATTCTTGAGAGCAGGTTTGTCCCCTTGTTCCTACTACAAAAAATCATCAGTTTGGTTAGGTTTGAAGAAGTTATGGCCTTCTATTGTTTCTAATGCTCGGTGGCTAATTGGCGATGGTGAGAAGGTGTCTTTTTGGAAAGATAATTGGTTGGGTGTTCCTTTATGTGCAATGTATAATGTGGACCCAGAGCTCATGAAGTTTCTCAATGATCAAGTAAGTAAGTTTATTGTTGATAATGAATGGGTGTTGCCTCCTATATTCTCTTCTTTTTTCAAGGAGGCTTCTGCACTGATTCTAGACACTGCTATACCTTTGGATGCTCAGCCGGATACAGCAGTTTGGTCTGGCAGTTCATCTGGAAAGTTAACTGCTAAAGCGGCTTATAAATATTTGTCTCCTTCTGGAGCGATTGTTGATTGGGGAAAACTAATTTGGCATAAATCAATTCAGCCAAGGAAGAGTCTAGTTGCATGGCAAGTTTTTAATGGCAGGGCCAAGACTGATAATTATCTGCAAAAAATTGGTGTGCATCTTTGCTCGCAATGCTCCTTTTGCATGGTACACAACGAAACCCTTGTTCATTTATTTTTGGATTGTGCTGTTATGAAAGAGGTTTGGGCTTGGCTCTTCTCCCTTTTTCGGCTCCAACCTTGGCAAGAACCAAATATAAGCTTTTTGTTTTCTACTGAGTTGCTTAAGCGGCTTTCCCCTGCATCAAAGCTGCTGTGGCGGATGGCTGTGTGCAGCCTTCTCTGGTTCACATGGACTGAACGTAATAGAATCAGAAACAATGGCTGTAAGTTTAATTTGGAGCGCTTTACACAGTGTTTCATCCTAGTTCTGAAGGAAGCTGCTCAGCTAGTCTTTAAACCTTATTCCAATTCTACTTCTGCTCTTCCAATCTTTCTATTGCTGGAATTATCATCGTTGCGGTGCAGTGCACAGTCTTTCAAGCCTGTGACTTGGATGGCTCCTCCTGCATCTTGGTTGAAAGTGAACACAGATGGGTCCTTTAGAGATGTTACAAGCGCTGGATATGGTGGTATTTTTAGGGATGCAGATGGTAATTTTGTGGGTGCTTTTTCAGCCAGAGTTGACGTCCCTAGTGCCATGGATGCTGAGGTACTTGCTGTTATTGAGGCCATTCAGGTGGCTTGGGTTCGGCGTTGGACTCATATATGGCTTGAGACGGACTCAATGCTTGTGTTACATTATTTTCGAAACCCAGGTCTTATTCCTTGGAGACTTAGAACCCGATGGCATAATTGTTTGTTTCAAGCTCGTCAACTTACTTTTCATGTCTCACATATATATCGAGAAGGCAATAGTGTTGCAGATAAGCTAGCAAATTATGGAGCTTTGAATGCGGGATCTGTCTGGTGGGCTTCCCTTCCTTCGTTCATCAGTACTCAATTCAGTCATGATTTTAATTCACGTACTAGTTATCGATTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

664

Amino Acids

75.68

Weight (kDa)

9.7

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 302 - 385 2.8e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 512 - 630 9.2e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59410
fragaria_vesca FvH4_3g36490
malus_domestica MD03G1090100.v1.1 MD11G1099700.v1.1
prunus_persica Prupe.6G074300_v2.0.a1
pyrus_communis pycom03g07170
rosa_chinensis RchiOBHm_Chr5g0065351
rosa_laevigata RLG00000035785
rosa_multiflora Rmu_sc0009942.1_g000004
rosa_roxburghii Rroxscaffold_1G00015840
rosa_rugosa Rorug05G0371400
rosa_samantha Rh5AG429300 Rh5BG444600 Rh5CG466900 Rh5DG456900
rosa_wichuraiana Rw5G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AatII GACGTC 1 cut(s) 1638
Acc36I ACCTGC 1 cut(s) 539
Acc65I GGTACC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 112, 133
AccI GTMKAC 2 cut(s) 88, 151
AciI CCGC 6 cut(s) 110, 914, 1237, 1267, 1468, 1904
AclWI GGATC 1 cut(s) 1915
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 2 cut(s) 4, 346
AcuI CTGAAG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 1635
AfaI GTAC 5 cut(s) 114, 1098, 1662, 1945, 1975
AfeI AGCGCT 2 cut(s) 1352, 1567
AfiI CCNNNNNNNGG 1 cut(s) 1176
AflII CTTAAG 2 cut(s) 323, 1232
AhlI ACTAGT 1 cut(s) 1976
AjnI CCWGG 2 cut(s) 209, 1762
AjuI GAANNNNNNNTTGG 2 cut(s) 952, 984
Alw21I GWGCWC 2 cut(s) 729, 1480
Alw26I GTCTC 5 cut(s) 357, 936, 1718, 1774, 1843
Alw44I GTGCAC 1 cut(s) 1476
AlwI GGATC 1 cut(s) 1915
Aor51HI AGCGCT 2 cut(s) 1352, 1567
AoxI GGCC 6 cut(s) 10, 217, 305, 611, 1029, 1677
ApaLI GTGCAC 1 cut(s) 1476
ApeKI GCWGC 5 cut(s) 161, 236, 1258, 1281, 1388
ApoI RAATTY 2 cut(s) 4, 346
ArsI GACNNNNNNTTYG 2 cut(s) 1750, 1782
Asp700I GAANNNNTTC 1 cut(s) 350
Asp718I GGTACC 1 cut(s) 112
AspLEI GCGC 2 cut(s) 1353, 1568
AspS9I GGNCC 4 cut(s) 217, 718, 1029, 1545
AsuHPI GGTGA 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 1756
AsuNHI GCTAGC 1 cut(s) 1879
AvaII GGWCC 2 cut(s) 718, 1545
BaeGI GKGCMC 1 cut(s) 1480
BaeI ACNNNNGTAYC 2 cut(s) 858, 891
BalI TGGCCA 1 cut(s) 12
BanI GGYRCC 2 cut(s) 112, 133
BanII GRGCYC 1 cut(s) 729
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 729, 1480
BbvCI CCTCAGC 1 cut(s) 1656
BbvI GCAGC 5 cut(s) 173, 248, 1245, 1293, 1375
BccI CCATC 7 cut(s) 520, 644, 1264, 1498, 1535, 1592, 1788
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 211, 1764
BciVI GTATCC 1 cut(s) 859
BclI TGATCA 2 cut(s) 421, 745
BcoDI GTCTC 5 cut(s) 357, 936, 1718, 1774, 1843
BcuI ACTAGT 1 cut(s) 1976
BfaI CTAG 7 cut(s) 833, 1001, 1373, 1397, 1641, 1880, 1977
BfoI RGCGCY 2 cut(s) 1354, 1569
BfrI CTTAAG 2 cut(s) 323, 1232
BfuAI ACCTGC 1 cut(s) 539
BfuI GTATCC 1 cut(s) 859
BisI GCNGC 7 cut(s) 162, 237, 915, 1238, 1259, 1282, 1389
BlpI GCTNAGC 2 cut(s) 858, 1392
BlsI GCNGC 7 cut(s) 163, 238, 916, 1239, 1260, 1283, 1390
BmcAI AGTACT 1 cut(s) 1945
Bme1390I CCNGG 2 cut(s) 211, 1764
Bme18I GGWCC 2 cut(s) 718, 1545
BmgT120I GGNCC 4 cut(s) 217, 718, 1029, 1545
BmiI GGNNCC 7 cut(s) 114, 135, 382, 720, 1181, 1509, 1546
BmrFI CCNGG 2 cut(s) 211, 1764
BmsI GCATC 6 cut(s) 844, 1075, 1259, 1526, 1582, 1642
BmtI GCTAGC 1 cut(s) 1883
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 1715, 1747
BpmI CTGGAG 1 cut(s) 960
Bpu10I CCTNAGC 1 cut(s) 1656
Bpu1102I GCTNAGC 2 cut(s) 858, 1392
Bpu14I TTCGAA 1 cut(s) 1756
BpuEI CTTGAG 4 cut(s) 216, 461, 562, 1742
Bsa29I ATCGAT 1 cut(s) 1984
BsaAI YACGTR 1 cut(s) 1973
BsaBI GATNNNNATC 1 cut(s) 1044
BsaHI GRCGYC 1 cut(s) 1635
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 5 cut(s) 989, 1187, 1647, 1762, 1775
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 1 cut(s) 1176
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 2 cut(s) 711, 1085
Bse8I GATNNNNATC 1 cut(s) 1044
BseBI CCWGG 2 cut(s) 211, 1764
BseCI ATCGAT 1 cut(s) 1984
BseDI CCNNGG 5 cut(s) 989, 1187, 1647, 1762, 1775
BseGI GGATG 7 cut(s) 206, 859, 1275, 1368, 1509, 1597, 1657
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 1 cut(s) 1176
BseMI GCAATG 2 cut(s) 711, 1085
BseMII CTCAG 5 cut(s) 518, 872, 1215, 1406, 1647
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 544, 1500
BseSI GKGCMC 1 cut(s) 1480
BseXI GCAGC 5 cut(s) 173, 248, 1245, 1293, 1375
BsgI GTGCAG 3 cut(s) 807, 1300, 1492
BshFI GGCC 6 cut(s) 12, 219, 307, 613, 1031, 1679
BshNI GGYRCC 2 cut(s) 112, 133
BshVI ATCGAT 1 cut(s) 1984
BsiHKAI GWGCWC 2 cut(s) 729, 1480
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 3 cut(s) 493, 541, 1622
BslI CCNNNNNNNGG 1 cut(s) 1176
BsmAI GTCTC 5 cut(s) 357, 936, 1718, 1774, 1843
BsmBI CGTCTC 1 cut(s) 1718
BsmFI GGGAC 3 cut(s) 493, 541, 1622
BsmI GAATGC 1 cut(s) 1906
BsnI GGCC 6 cut(s) 12, 219, 307, 613, 1031, 1679
Bso31I GGTCTC 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 1756
Bsp1286I GDGCHC 2 cut(s) 729, 1480
Bsp143I GATC 3 cut(s) 421, 745, 1907
Bsp1720I GCTNAGC 2 cut(s) 858, 1392
Bsp19I CCATGG 1 cut(s) 1647
BspACI CCGC 6 cut(s) 110, 914, 1237, 1267, 1468, 1904
BspANI GGCC 6 cut(s) 12, 219, 307, 613, 1031, 1679
BspCNI CTCAG 5 cut(s) 519, 871, 1216, 1405, 1648
BspDI ATCGAT 1 cut(s) 1984
BspHI TCATGA 2 cut(s) 729, 1957
BspLI GGNNCC 7 cut(s) 114, 135, 382, 720, 1181, 1509, 1546
BspMI ACCTGC 1 cut(s) 539
BspOI GCTAGC 1 cut(s) 1883
BspPI GGATC 1 cut(s) 1915
BspQI GCTCTTC 2 cut(s) 1169, 1437
BspT104I TTCGAA 1 cut(s) 1756
BspT107I GGYRCC 2 cut(s) 112, 133
BspTI CTTAAG 2 cut(s) 323, 1232
BspTNI GGTCTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 711, 1085
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 989, 1187, 1647, 1762, 1775
BssMI GATC 3 cut(s) 421, 745, 1907
BssNI GRCGYC 1 cut(s) 1635
BssT1I CCWWGG 4 cut(s) 989, 1187, 1647, 1775
Bst2UI CCWGG 2 cut(s) 211, 1764
Bst4CI ACNGT 2 cut(s) 1362, 1482
Bst6I CTCTTC 4 cut(s) 805, 989, 1169, 1437
BstACI GRCGYC 1 cut(s) 1635
BstAFI CTTAAG 2 cut(s) 323, 1232
BstBAI YACGTR 1 cut(s) 1973
BstBI TTCGAA 1 cut(s) 1756
BstC8I GCNNGC 5 cut(s) 57, 221, 413, 1076, 1881
BstDEI CTNAG 6 cut(s) 527, 858, 1224, 1392, 1656, 1784
BstDSI CCRYGG 1 cut(s) 1647
BstF5I GGATG 7 cut(s) 206, 859, 1275, 1368, 1509, 1597, 1657
BstH2I RGCGCY 2 cut(s) 1354, 1569
BstHHI GCGC 2 cut(s) 1353, 1568
BstKTI GATC 3 cut(s) 424, 748, 1910
BstMAI GTCTC 5 cut(s) 357, 936, 1718, 1774, 1843
BstMBI GATC 3 cut(s) 421, 745, 1907
BstNI CCWGG 2 cut(s) 211, 1764
BstNSI RCATGY 2 cut(s) 59, 522
BstSCI CCNGG 2 cut(s) 209, 1762
BstSLI GKGCMC 1 cut(s) 1480
BstV1I GCAGC 5 cut(s) 173, 248, 1245, 1293, 1375
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 1907
BstXI CCANNNNNNTGG 1 cut(s) 1687
BstYI RGATCY 1 cut(s) 1907
Bsu15I ATCGAT 1 cut(s) 1984
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 6 cut(s) 12, 219, 307, 613, 1031, 1679
BsuTUI ATCGAT 1 cut(s) 1984
BtgI CCRYGG 1 cut(s) 1647
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 7 cut(s) 206, 859, 1275, 1368, 1509, 1597, 1657
BtsI GCAGTG 2 cut(s) 837, 1480
BtsIMutI CAGTG 4 cut(s) 824, 837, 1367, 1480
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 5 cut(s) 57, 221, 413, 1076, 1881
CciI TCATGA 2 cut(s) 729, 1957
CfoI GCGC 2 cut(s) 1353, 1568
Cfr13I GGNCC 4 cut(s) 217, 718, 1029, 1545
ClaI ATCGAT 1 cut(s) 1984
CseI GACGC 1 cut(s) 74
Csp6I GTAC 5 cut(s) 113, 1097, 1661, 1944, 1974
CviAII CATG 9 cut(s) 56, 519, 730, 1008, 1093, 1299, 1648, 1835, 1958
CviQI GTAC 5 cut(s) 113, 1097, 1661, 1944, 1974
DdeI CTNAG 6 cut(s) 527, 858, 1224, 1392, 1656, 1784
DpnI GATC 3 cut(s) 423, 747, 1909
DpnII GATC 3 cut(s) 421, 745, 1907
DraI TTTAAA 1 cut(s) 1405
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 4 cut(s) 805, 989, 1169, 1437
EarI CTCTTC 4 cut(s) 805, 989, 1169, 1437
EciI GGCGGA 1 cut(s) 1282
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 4 cut(s) 989, 1187, 1647, 1775
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 718, 1545
Eco47III AGCGCT 2 cut(s) 1352, 1567
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 1400
EcoICRI GAGCTC 1 cut(s) 727
EcoO109I RGGNCCY 2 cut(s) 217, 1545
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 209, 1762
EcoT14I CCWWGG 4 cut(s) 989, 1187, 1647, 1775
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 4 cut(s) 989, 1187, 1647, 1775
Esp3I CGTCTC 1 cut(s) 1718
FaeI CATG 9 cut(s) 59, 522, 733, 1011, 1096, 1302, 1651, 1838, 1961
FaqI GGGAC 3 cut(s) 493, 541, 1622
FatI CATG 9 cut(s) 55, 518, 729, 1007, 1092, 1298, 1647, 1834, 1957
FauI CCCGC 1 cut(s) 1897
FbaI TGATCA 2 cut(s) 421, 745
FblI GTMKAC 2 cut(s) 88, 151
Fnu4HI GCNGC 7 cut(s) 162, 237, 915, 1238, 1259, 1282, 1389
FokI GGATG 7 cut(s) 193, 866, 1282, 1355, 1516, 1604, 1664
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 7 cut(s) 162, 237, 915, 1238, 1259, 1282, 1389
FspBI CTAG 7 cut(s) 833, 1001, 1373, 1397, 1641, 1880, 1977
GlaI GCGC 2 cut(s) 1352, 1567
GluI GCNGC 7 cut(s) 162, 237, 915, 1238, 1259, 1282, 1389
GsuI CTGGAG 1 cut(s) 960
HaeII RGCGCY 2 cut(s) 1354, 1569
HaeIII GGCC 6 cut(s) 12, 219, 307, 613, 1031, 1679
HapII CCGG 1 cut(s) 863
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 1353, 1568
Hin1I GRCGYC 1 cut(s) 1635
Hin1II CATG 9 cut(s) 59, 522, 733, 1011, 1096, 1302, 1651, 1838, 1961
Hin6I GCGC 2 cut(s) 1351, 1566
HinP1I GCGC 2 cut(s) 1351, 1566
HincII GTYRAC 3 cut(s) 903, 1633, 1823
HindII GTYRAC 3 cut(s) 903, 1633, 1823
HindIII AAGCTT 1 cut(s) 1207
HinfI GANTC 8 cut(s) 340, 537, 829, 997, 1317, 1708, 1730, 1986
HpaI GTTAAC 1 cut(s) 903
HpaII CCGG 1 cut(s) 863
HphI GGTGA 1 cut(s) 665
Hpy188I TCNGA 6 cut(s) 101, 173, 345, 528, 1322, 1380
Hpy188III TCNNGA 8 cut(s) 355, 541, 730, 833, 894, 939, 1853, 1958
HpyCH4III ACNGT 2 cut(s) 1362, 1482
HpyCH4IV ACGT 3 cut(s) 1309, 1635, 1972
HpyF3I CTNAG 6 cut(s) 527, 858, 1224, 1392, 1656, 1784
HpySE526I ACGT 3 cut(s) 1309, 1635, 1972
Hsp92I GRCGYC 1 cut(s) 1635
Hsp92II CATG 9 cut(s) 59, 522, 733, 1011, 1096, 1302, 1651, 1838, 1961
HspAI GCGC 2 cut(s) 1351, 1566
KpnI GGTACC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 421, 745
KspAI GTTAAC 1 cut(s) 903
Kzo9I GATC 3 cut(s) 421, 745, 1907
LguI GCTCTTC 2 cut(s) 1169, 1437
LmnI GCTCC 6 cut(s) 941, 1088, 1185, 1348, 1513, 1892
Lsp1109I GCAGC 5 cut(s) 173, 248, 1245, 1293, 1375
LweI GCATC 6 cut(s) 844, 1075, 1259, 1526, 1582, 1642
MaeI CTAG 7 cut(s) 833, 1001, 1373, 1397, 1641, 1880, 1977
MaeII ACGT 3 cut(s) 1309, 1635, 1972
MaeIII GTNAC 3 cut(s) 1495, 1558, 1743
MalI GATC 3 cut(s) 423, 747, 1909
MboI GATC 3 cut(s) 421, 745, 1907
MboII GAAGA 6 cut(s) 27, 613, 792, 1006, 1156, 1424
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 1907
MhlI GDGCHC 2 cut(s) 729, 1480
MlsI TGGCCA 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 12
MlyI GAGTC 4 cut(s) 334, 1006, 1702, 1724
MmeI TCCRAC 3 cut(s) 408, 1207, 1685
MnlI CCTC 9 cut(s) 318, 484, 522, 798, 808, 1141, 1521, 1651, 1669
Mox20I TGGCCA 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 12
MseI TTAA 8 cut(s) 324, 371, 902, 1020, 1233, 1341, 1404, 1965
MslI CAYNNNNRTG 2 cut(s) 517, 1685
Msp20I TGGCCA 1 cut(s) 12
MspCI CTTAAG 2 cut(s) 323, 1232
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 2 cut(s) 211, 1764
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 1906
MvaI CCWGG 2 cut(s) 211, 1764
NcoI CCATGG 1 cut(s) 1647
NdeII GATC 3 cut(s) 421, 745, 1907
NheI GCTAGC 1 cut(s) 1879
NlaIII CATG 9 cut(s) 59, 522, 733, 1011, 1096, 1302, 1651, 1838, 1961
NlaIV GGNNCC 7 cut(s) 114, 135, 382, 720, 1181, 1509, 1546
NmuCI GTSAC 1 cut(s) 1495
NspI RCATGY 2 cut(s) 59, 522
NspV TTCGAA 1 cut(s) 1756
PaeI GCATGC 1 cut(s) 59
PagI TCATGA 2 cut(s) 729, 1957
PciSI GCTCTTC 2 cut(s) 1169, 1437
PctI GAATGC 1 cut(s) 1906
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 4 cut(s) 537, 829, 1317, 1986
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 7 cut(s) 163, 238, 916, 1239, 1260, 1283, 1390
PleI GAGTC 4 cut(s) 334, 1005, 1702, 1724
PpsI GAGTC 4 cut(s) 334, 1005, 1702, 1724
Ppu21I YACGTR 1 cut(s) 1973
PpuMI RGGWCCY 1 cut(s) 1545
PsiI TTATAA 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 1545
Psp6I CCWGG 2 cut(s) 209, 1762
PspGI CCWGG 2 cut(s) 209, 1762
PspN4I GGNNCC 7 cut(s) 114, 135, 382, 720, 1181, 1509, 1546
PspPI GGNCC 4 cut(s) 217, 718, 1029, 1545
PspPPI RGGWCCY 1 cut(s) 1545
PsuI RGATCY 1 cut(s) 1907
RsaI GTAC 5 cut(s) 114, 1098, 1662, 1945, 1975
RsaNI GTAC 5 cut(s) 113, 1097, 1661, 1944, 1974
RseI CAYNNNNRTG 2 cut(s) 517, 1685
SacI GAGCTC 1 cut(s) 729
SapI GCTCTTC 2 cut(s) 1169, 1437
SaqAI TTAA 8 cut(s) 324, 371, 902, 1020, 1233, 1341, 1404, 1965
SatI GCNGC 7 cut(s) 162, 237, 915, 1238, 1259, 1282, 1389
Sau3AI GATC 3 cut(s) 421, 745, 1907
Sau96I GGNCC 4 cut(s) 217, 718, 1029, 1545
ScaI AGTACT 1 cut(s) 1945
SchI GAGTC 4 cut(s) 334, 1006, 1702, 1724
ScrFI CCNGG 2 cut(s) 211, 1764
SduI GDGCHC 2 cut(s) 729, 1480
SfaNI GCATC 6 cut(s) 844, 1075, 1259, 1526, 1582, 1642
SfuI TTCGAA 1 cut(s) 1756
SinI GGWCC 2 cut(s) 718, 1545
SmiMI CAYNNNNRTG 2 cut(s) 517, 1685
SmlI CTYRAG 6 cut(s) 231, 323, 476, 541, 1232, 1721
SmoI CTYRAG 6 cut(s) 231, 323, 476, 541, 1232, 1721
SpeI ACTAGT 1 cut(s) 1976
SphI GCATGC 1 cut(s) 59
SsiI CCGC 6 cut(s) 110, 914, 1237, 1267, 1468, 1904
SspI AATATT 1 cut(s) 926
SspMI CTAG 7 cut(s) 833, 1001, 1373, 1397, 1641, 1880, 1977
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 209, 1762
StyI CCWWGG 4 cut(s) 989, 1187, 1647, 1775
TaaI ACNGT 2 cut(s) 1362, 1482
TaiI ACGT 3 cut(s) 1312, 1638, 1975
TaqI TCGA 3 cut(s) 1756, 1852, 1984
TaqII GACCGA 1 cut(s) 169
TatI WGTACW 1 cut(s) 1943
TauI GCSGC 2 cut(s) 917, 1240
TfiI GAWTC 4 cut(s) 537, 829, 1317, 1986
Tru1I TTAA 8 cut(s) 324, 371, 902, 1020, 1233, 1341, 1404, 1965
Tru9I TTAA 8 cut(s) 324, 371, 902, 1020, 1233, 1341, 1404, 1965
TscAI CASTG 4 cut(s) 831, 844, 1367, 1480
TseFI GTSAC 1 cut(s) 1495
TseI GCWGC 5 cut(s) 161, 236, 1258, 1281, 1388
Tsp45I GTSAC 1 cut(s) 1495
TspGWI ACGGA 1 cut(s) 1742
TspRI CASTG 4 cut(s) 831, 844, 1367, 1480
Vha464I CTTAAG 2 cut(s) 323, 1232
VneI GTGCAC 1 cut(s) 1476
VpaK11BI GGWCC 2 cut(s) 718, 1545
XapI RAATTY 2 cut(s) 4, 346
XbaI TCTAGA 1 cut(s) 832
XceI RCATGY 2 cut(s) 59, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 2 cut(s) 88, 151
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 7 cut(s) 833, 1001, 1373, 1397, 1641, 1880, 1977
ZraI GACGTC 1 cut(s) 1636
ZrmI AGTACT 1 cut(s) 1945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.