Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007641

Physical Location & Seq

Genomic Coordinates Reverse (-)

23979390 .. 23982208

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59480.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGTATGAGGAACACTTTCAGCAAACTTCTGAAGCTAAATATGATTGTCTTTTATTTGATATAGATGATACTCTTTACCCTCTCAGTTCTGGTTTGGCCATGGAAGTGAAAAAGAACATTCAAGAATATATGGTTCAGAAACTTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGCCTTTCCCTTTATAAAATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGATTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACTCAACACTGAAGCCTGACCCAATTCTGAGGAATATTATTCTTAGCTTGCCTATTCGGAAAGTTGTTTTTACGAATGCAGACAAGGCTCATGCAGCCAAGATTATTGCCAGGCTAGGCCTAGAGGGCTGCTTTGAGAAAATCATATCTTTCGAGACTCTGAACCCCATCACCAAAACTGAATCTCCTGTTGATACCAAAACCAGAGAAATCTTCGACATAATCAGTTACATGGCAAATCCTGATTCAAGCATTGAACTTCCAAAGACTTCTGTTGTATGCAAACCTTCTGAAGGAGCATTCGAACAGGTTTTCAAGATGGCCAACATCAATCCTAAGAAGACATTGTTCTTCGATGACAGCATCCGCAACATTCAAACTGGGAAGCGCGTTGGTCTCCACACCGTATGGGTTGGGACCTCACACAGAGAGGAAGGAGTAGATATTGCATTGGAGCATATTCACAACATACGTGAAGCTCTTCCTCAACTATGGGATGCTGTTGATGACAAAGCCAAGGAGATTAGAACCAGGCAAAAGGTCGCCATTGAAACCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

282

Amino Acids

32.1

Weight (kDa)

5.68

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59480 AT5G59480 AT5G59480 AT5G59480 AT5G59480
fragaria_vesca	FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780
malus_domestica	MD11G1097600.v1.1
prunus_persica	Prupe.6G072800_v2.0.a1
pyrus_communis	pycom03g07020 pycom11g08230
rosa_chinensis	RchiOBHm_Chr5g0065831
rosa_laevigata	RLG00000035820
rosa_multiflora	Rmu_sc0042868.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015320
rosa_rugosa	Rorug05G0374100
rosa_samantha	Rh5AG432800 Rh5BG449100 Rh5CG471300 Rh5DG462700
rosa_wichuraiana	Rw5G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AccII	CGCG	1 cut(s)	675
AciI	CCGC	1 cut(s)	652
AcoI	YGGCCR	2 cut(s)	99, 606
AcuI	CTGAAG	3 cut(s)	54, 317, 597
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	7 cut(s)	125, 155, 534, 542, 601, 662, 836
AjnI	CCWGG	2 cut(s)	395, 815
AluBI	AGCT	3 cut(s)	38, 333, 764
AluI	AGCT	3 cut(s)	38, 333, 764
Alw26I	GTCTC	3 cut(s)	224, 434, 686
AoxI	GGCC	3 cut(s)	99, 403, 606
ApeKI	GCWGC	2 cut(s)	380, 414
Asp700I	GAANNNNTTC	2 cut(s)	18, 765
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	448
AsuII	TTCGAA	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	702
BalI	TGGCCA	2 cut(s)	101, 608
BbsI	GAAGAC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	392, 401
BccI	CCATC	3 cut(s)	267, 461, 598
BciT130I	CCWGG	2 cut(s)	397, 817
BcoDI	GTCTC	3 cut(s)	224, 434, 686
BfaI	CTAG	2 cut(s)	401, 407
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	381, 415
BlsI	GCNGC	2 cut(s)	382, 416
Bme1390I	CCNGG	2 cut(s)	397, 817
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	2 cut(s)	397, 817
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	657, 772
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	758
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	224, 686
BsaJI	CCNNGG	2 cut(s)	102, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	397, 817
BseDI	CCNNGG	2 cut(s)	102, 801
BseGI	GGATG	2 cut(s)	648, 787
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	2 cut(s)	100, 305
BseNI	ACTGG	1 cut(s)	670
BseXI	GCAGC	2 cut(s)	392, 401
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	101, 405, 608
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	3 cut(s)	224, 434, 686
BsmFI	GGGAC	1 cut(s)	715
BsmI	GAATGC	2 cut(s)	367, 584
BsnI	GGCC	3 cut(s)	101, 405, 608
Bso31I	GGTCTC	2 cut(s)	224, 686
Bsp119I	TTCGAA	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	652
BspANI	GGCC	3 cut(s)	101, 405, 608
BspCNI	CTCAG	2 cut(s)	99, 306
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	771
BspT104I	TTCGAA	1 cut(s)	588
BspTNI	GGTCTC	2 cut(s)	224, 686
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	102, 801
BssT1I	CCWWGG	2 cut(s)	102, 801
Bst2UI	CCWGG	2 cut(s)	397, 817
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	1 cut(s)	771
BstBAI	YACGTR	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	86, 314, 329, 621
BstDSI	CCRYGG	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	648, 787
BstFNI	CGCG	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	675
BstMAI	GTCTC	3 cut(s)	224, 434, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 380, 411
BstNI	CCWGG	2 cut(s)	397, 817
BstSCI	CCNGG	2 cut(s)	395, 815
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	392, 401
BstV2I	GAAGAC	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	101, 405, 608
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	648, 787
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	702
CviAII	CATG	4 cut(s)	103, 272, 377, 517
DdeI	CTNAG	4 cut(s)	86, 314, 329, 621
EaeI	YGGCCR	2 cut(s)	99, 606
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	2 cut(s)	102, 801
Eco147I	AGGCCT	1 cut(s)	405
Eco31I	GGTCTC	2 cut(s)	224, 686
Eco47I	GGWCC	1 cut(s)	702
Eco57I	CTGAAG	3 cut(s)	54, 317, 597
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	395, 815
EcoT14I	CCWWGG	2 cut(s)	102, 801
ErhI	CCWWGG	2 cut(s)	102, 801
FaeI	CATG	4 cut(s)	106, 275, 380, 520
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	4 cut(s)	102, 271, 376, 516
Fnu4HI	GCNGC	2 cut(s)	381, 415
FokI	GGATG	2 cut(s)	635, 794
Fsp4HI	GCNGC	2 cut(s)	381, 415
FspBI	CTAG	2 cut(s)	401, 407
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	2 cut(s)	381, 415
HaeIII	GGCC	3 cut(s)	101, 405, 608
HhaI	GCGC	1 cut(s)	675
Hin1II	CATG	4 cut(s)	106, 275, 380, 520
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	442, 467, 530
HphI	GGTGA	1 cut(s)	448
Hpy188I	TCNGA	6 cut(s)	34, 141, 315, 345, 447, 577
Hpy188III	TCNNGA	4 cut(s)	125, 439, 527, 601
HpyAV	CCTTC	3 cut(s)	572, 582, 713
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	757
HpyCH4V	TGCA	4 cut(s)	365, 380, 567, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 380, 411
HpyF3I	CTNAG	4 cut(s)	86, 314, 329, 621
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	4 cut(s)	106, 275, 380, 520
HspAI	GCGC	1 cut(s)	673
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	2 cut(s)	581, 739
Lsp1109I	GCAGC	2 cut(s)	392, 401
LweI	GCATC	2 cut(s)	657, 772
MaeI	CTAG	2 cut(s)	401, 407
MaeII	ACGT	1 cut(s)	757
MaeIII	GTNAC	1 cut(s)	512
MboII	GAAGA	6 cut(s)	167, 170, 490, 628, 637, 758
MlsI	TGGCCA	2 cut(s)	101, 608
MluCI	AATT	1 cut(s)	309
MluNI	TGGCCA	2 cut(s)	101, 608
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	7 cut(s)	4, 93, 309, 403, 709, 715, 780
Mox20I	TGGCCA	2 cut(s)	101, 608
MroXI	GAANNNNTTC	2 cut(s)	18, 765
MscI	TGGCCA	2 cut(s)	101, 608
MseI	TTAA	1 cut(s)	847
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	2 cut(s)	101, 608
MspR9I	CCNGG	2 cut(s)	397, 817
Mva1269I	GAATGC	2 cut(s)	367, 584
MvaI	CCWGG	2 cut(s)	397, 817
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	371, 380, 411
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	4 cut(s)	106, 275, 380, 520
NlaIV	GGNNCC	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	588
PceI	AGGCCT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	771
PctI	GAATGC	2 cut(s)	367, 584
PdmI	GAANNNNTTC	2 cut(s)	18, 765
PfeI	GAWTC	2 cut(s)	467, 530
PkrI	GCNGC	2 cut(s)	382, 416
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	395, 815
PspGI	CCWGG	2 cut(s)	395, 815
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	1 cut(s)	702
PspPPI	RGGWCCY	1 cut(s)	702
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	2 cut(s)	381, 415
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	397, 817
SetI	ASST	8 cut(s)	40, 335, 574, 597, 707, 760, 766, 828
SfaNI	GCATC	2 cut(s)	657, 772
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	652
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	401, 407
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	395, 815
StyI	CCWWGG	2 cut(s)	102, 801
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	4 cut(s)	438, 501, 588, 639
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	467, 530
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	380, 414
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	702
XagI	CCTNNNNNAGG	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	18, 765
XspI	CTAG	2 cut(s)	401, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.