Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007641

Physical Location & Seq

Genomic Coordinates Forward (+)

6344557 .. 6346998

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08230.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGATAGCGACACTTTTCCAGTTAAACGCGCTTCCGACTCCTTCTTTTCTTTCACCTTACCCTACTAAAATATCCTTTCTCTCTATCTCTCTCTCTCTCTGCAACGTCGGTCATTCGGATCTGCCTTCTAGAAAACAGATGGAAAATCAGGTTCAATATCACCAATATGAGTGCCTTCTATTTGATCTAGACGACACCCTTTACCCTCTGAGTTCTGGAATTTCAGTACAAATCACTAAGAATATTAAAGAATATATGATTCAAAAGCTTGGCATGGACGAAAGTGAAGTTCCCGAATTGTGCATTTCTTTGTACAAGGATTATGGGACAACAATGGCCGGTCTTAAGGCTCAGGGCTATAACTTCGATTACGATGACTTTCATAGTTTTGTTCATGGGAGGTTGCCCTACGAGTTGCTTACTCCTGATCCTGTCCTGAGGGGTCTTTTACTTAGTCTGCCTATCCGCAAAGTAATTTTCACGAATTCGGATAAGAAACATGCGGATACTGTGCTCAAAAGGCTTGGAATAGAGGACTGCTTTGAGTCAGTTATATGCTTTGAGACAGTGAATCCCACCAACAATGCCGATGATTCTGTTGGTGCAGAAGAAACTGAACACACTGAACAACCAAATACTGGTGCGGTGGTTCCAAAGACCCCGGTTGTCTGCAAACCATTCGAGCTTGCATACGAAGAAGCCTTTAAATTTGCAAACATCGAACCTCAAAGAACATTATTCTTCGATGATAGCATTCGCAATATACAAACTGCAAAGCAGTGTGGCCTCCATACAGTATTGGTTGGCACCTCCCACCGCACCAAAGGCGCGGATTATGCACTTGAGAGCATCCATAATATGAAGGAAGCACTGCCAGAACTCTGGGAAATCACCACTGAGCAGTCTGAAAATGTCCAAACTACACGAGAGATTGCAATTGAGCAACTGGTGGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_like

Protein Analysis

321

Amino Acids

36.1

Weight (kDa)

4.83

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59480 AT5G59480 AT5G59480 AT5G59480 AT5G59480
fragaria_vesca	FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780
malus_domestica	MD11G1097600.v1.1
prunus_persica	Prupe.6G072800_v2.0.a1
pyrus_communis	pycom03g07020 pycom11g08230
rosa_chinensis	RchiOBHm_Chr5g0065831
rosa_laevigata	RLG00000035820
rosa_multiflora	Rmu_sc0042868.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015320
rosa_rugosa	Rorug05G0374100
rosa_samantha	Rh5AG432800 Rh5BG449100 Rh5CG471300 Rh5DG462700
rosa_wichuraiana	Rw5G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	809
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccII	CGCG	2 cut(s)	32, 833
AciI	CCGC	5 cut(s)	469, 506, 647, 820, 833
AclWI	GGATC	2 cut(s)	129, 425
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	222, 487, 710
AfaI	GTAC	2 cut(s)	231, 317
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	158, 266
AluBI	AGCT	3 cut(s)	271, 688, 959
AluI	AGCT	3 cut(s)	271, 688, 959
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	129, 425
AoxI	GGCC	2 cut(s)	339, 787
ApoI	RAATTY	3 cut(s)	222, 487, 710
AspLEI	GCGC	2 cut(s)	34, 833
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	48, 155, 886
AxyI	CCTNAGG	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	809
BauI	CACGAG	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	132, 191
BfrI	CTTAAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	654, 811
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	22, 646, 954
Bse21I	CCTNAGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	1 cut(s)	852
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	4 cut(s)	203, 368, 431, 891
BseNI	ACTGG	3 cut(s)	22, 646, 954
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	32, 833
BshFI	GGCC	2 cut(s)	341, 789
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	342, 665
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	341, 789
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	121, 187, 430
BspACI	CCGC	5 cut(s)	469, 506, 647, 820, 833
BspANI	GGCC	2 cut(s)	341, 789
BspCNI	CTCAG	4 cut(s)	204, 367, 432, 892
BspFNI	CGCG	2 cut(s)	32, 833
BspLI	GGNNCC	2 cut(s)	654, 811
BspPI	GGATC	2 cut(s)	129, 425
BspT107I	GGYRCC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	22, 646, 954
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	3 cut(s)	121, 187, 430
BssSI	CACGAG	1 cut(s)	927
Bst2BI	CACGAG	1 cut(s)	927
Bst4CI	ACNGT	3 cut(s)	514, 571, 799
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	7 cut(s)	212, 240, 354, 440, 455, 900, 960
BstF5I	GGATG	1 cut(s)	852
BstFNI	CGCG	2 cut(s)	32, 833
BstHHI	GCGC	2 cut(s)	34, 833
BstKTI	GATC	3 cut(s)	124, 190, 433
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	3 cut(s)	121, 187, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 828, 839
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	663
BstUI	CGCG	2 cut(s)	32, 833
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	885
BstYI	RGATCY	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	341, 789
BtsCI	GGATG	1 cut(s)	852
BtsI	GCAGTG	2 cut(s)	788, 872
BtsIMutI	CAGTG	5 cut(s)	576, 624, 788, 872, 897
Cac8I	GCNNGC	1 cut(s)	690
CfoI	GCGC	2 cut(s)	34, 833
Cfr10I	RCCGGY	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	230, 316
CviAII	CATG	3 cut(s)	277, 398, 503
CviJI	RGCY	9 cut(s)	271, 341, 353, 360, 526, 688, 704, 789, 959
CviKI_1	RGCY	9 cut(s)	271, 341, 353, 360, 526, 688, 704, 789, 959
CviQI	GTAC	2 cut(s)	230, 316
DdeI	CTNAG	7 cut(s)	212, 240, 354, 440, 455, 900, 960
DpnI	GATC	3 cut(s)	123, 189, 432
DpnII	GATC	3 cut(s)	121, 187, 430
DraI	TTTAAA	1 cut(s)	709
EaeI	YGGCCR	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	487
FaeI	CATG	3 cut(s)	280, 401, 506
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	3 cut(s)	276, 397, 502
FokI	GGATG	1 cut(s)	839
FspBI	CTAG	2 cut(s)	132, 191
GlaI	GCGC	2 cut(s)	33, 832
HaeIII	GGCC	2 cut(s)	341, 789
HapII	CCGG	2 cut(s)	342, 665
HhaI	GCGC	2 cut(s)	34, 833
Hin1II	CATG	3 cut(s)	280, 401, 506
Hin6I	GCGC	2 cut(s)	32, 831
HinP1I	GCGC	2 cut(s)	32, 831
HindIII	AAGCTT	2 cut(s)	269, 957
HinfI	GANTC	5 cut(s)	40, 262, 548, 574, 596
HpaII	CCGG	2 cut(s)	342, 665
HphI	GGTGA	3 cut(s)	48, 155, 886
Hpy188I	TCNGA	5 cut(s)	39, 121, 213, 493, 910
Hpy188III	TCNNGA	7 cut(s)	132, 191, 219, 296, 428, 439, 484
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	54, 138, 188, 859
HpyCH4III	ACNGT	3 cut(s)	514, 571, 799
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	9 cut(s)	105, 306, 608, 675, 692, 716, 776, 842, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 828, 839
HpyF3I	CTNAG	7 cut(s)	212, 240, 354, 440, 455, 900, 960
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	280, 401, 506
HspAI	GCGC	2 cut(s)	32, 831
Kzo9I	GATC	3 cut(s)	121, 187, 430
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	2 cut(s)	132, 191
MaeII	ACGT	1 cut(s)	108
MalI	GATC	3 cut(s)	123, 189, 432
MboI	GATC	3 cut(s)	121, 187, 430
MboII	GAAGA	3 cut(s)	623, 710, 736
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	6 cut(s)	222, 299, 477, 487, 710, 939
MlyI	GAGTC	2 cut(s)	34, 557
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	219, 396, 435, 529, 738, 800, 823
MseI	TTAA	4 cut(s)	26, 249, 348, 708
MslI	CAYNNNNRTG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	342, 665
MspR9I	CCNGG	1 cut(s)	665
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	756
MvnI	CGCG	2 cut(s)	32, 833
MwoI	GCNNNNNNNGC	3 cut(s)	523, 828, 839
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	121, 187, 430
NlaIII	CATG	3 cut(s)	280, 401, 506
NlaIV	GGNNCC	2 cut(s)	654, 811
NspI	RCATGY	1 cut(s)	506
PctI	GAATGC	1 cut(s)	756
PfeI	GAWTC	3 cut(s)	262, 574, 596
PflMI	CCANNNNNTGG	1 cut(s)	641
PleI	GAGTC	2 cut(s)	34, 556
PpsI	GAGTC	2 cut(s)	34, 556
PspN4I	GGNNCC	2 cut(s)	654, 811
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	231, 317
RsaNI	GTAC	2 cut(s)	230, 316
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	26, 249, 348, 708
Sau3AI	GATC	3 cut(s)	121, 187, 430
SchI	GAGTC	2 cut(s)	34, 557
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	9 cut(s)	61, 111, 156, 273, 407, 690, 730, 815, 961
SfaNI	GCATC	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	347, 845
SmoI	CTYRAG	2 cut(s)	347, 845
Sse9I	AATT	6 cut(s)	222, 299, 477, 487, 710, 939
SsiI	CCGC	5 cut(s)	469, 506, 647, 820, 833
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	132, 191
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	514, 571, 799
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	369, 684, 723, 747
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	6 cut(s)	222, 299, 477, 487, 710, 939
TatI	WGTACW	2 cut(s)	229, 315
TfiI	GAWTC	3 cut(s)	262, 574, 596
Tru1I	TTAA	4 cut(s)	26, 249, 348, 708
Tru9I	TTAA	4 cut(s)	26, 249, 348, 708
TscAI	CASTG	5 cut(s)	576, 631, 788, 879, 904
TspDTI	ATGAA	3 cut(s)	374, 386, 878
TspRI	CASTG	5 cut(s)	576, 631, 788, 879, 904
Van91I	CCANNNNNTGG	1 cut(s)	641
Vha464I	CTTAAG	1 cut(s)	347
XapI	RAATTY	3 cut(s)	222, 487, 710
XbaI	TCTAGA	2 cut(s)	131, 190
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	2 cut(s)	132, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.