Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007641

Physical Location & Seq

Genomic Coordinates Forward (+)

5577187 .. 5579412

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07020.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGTCTTCTTCTATTCTTTCACTTTACCCTACTTAAAGTCCCCCCCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGCTCTGCAACGTCGGTCAAGCGGATCTGCTTTGTGGATAAAGATGGAAAATCAGCTTCAGTATCACCAATATGAGTGCCTTCTGTTTGATCTAGATGACACCCTTTACCCTCTGAGTTCTGGAATTTCAGTGCAAATCACTACGAATATTAAAGAATATATGATTCAAAAGCTTGGCATGGACGAAAGTGAAGTTCCGGAATTGTGTATTTCTTTGTACAAGGATTATGGAACAACAATGGCTGGTCTTAAGGCGAAGGGCTATAACTTCGACTATGATGACTTTCATAGTTTTGTTCATGGGAGGTTGCCATATGAATTGCTTCATCCTGATCCTGTTCTGAGGGGTCTTTTACTTAGACTGCCTGTCCGGAAAGTCATTTTCACGAATTCGGATAAGGCACATGCGGCTACTGTGCTCAAAAGGCTTGGAATTGAGGACTGCTTTGAGTCGGTTATATGCTTTGAGACACTGAATCCCACCAACTGTGCTGATGATTCTGTGGGTGCAGGTGTAGCTGAACACATTGAACAACCAGATACTGGTGCGGTAATTCCAAAGACCCCAGTTGTCTCCAAACCATTTGAACAGGCATATGAAGAAGCTTTTAAGATAGCAAACATCGACCCTCAAAGAACGTTATTCTTCGACGATAGCATTCGGAATTTACAAACTGCAAAGCAGTGTGGCCTTCACACAGTATTGGTTGGCACCTCTCACCGAACTAAAGGCGTGGACCATGCACTTGAGAGCATCCATAATATGAAGGAAGCACTGCCAGAACTCTGGGAAACCAGCACCGGGGAGTCTGAAAATGTCCGGAATTCACGAGAGATTGCAATTGAGCAACTGGTAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

325

Amino Acids

36.24

Weight (kDa)

5.22

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59480 AT5G59480 AT5G59480 AT5G59480 AT5G59480
fragaria_vesca	FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780
malus_domestica	MD11G1097600.v1.1
prunus_persica	Prupe.6G072800_v2.0.a1
pyrus_communis	pycom03g07020 pycom11g08230
rosa_chinensis	RchiOBHm_Chr5g0065831
rosa_laevigata	RLG00000035820
rosa_multiflora	Rmu_sc0042868.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015320
rosa_rugosa	Rorug05G0374100
rosa_samantha	Rh5AG432800 Rh5BG449100 Rh5CG471300 Rh5DG462700
rosa_wichuraiana	Rw5G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	821
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccIII	TCCGGA	3 cut(s)	307, 480, 930
AciI	CCGC	3 cut(s)	132, 518, 659
AclI	AACGTT	1 cut(s)	749
AclWI	GGATC	2 cut(s)	142, 437
AcsI	RAATTY	4 cut(s)	234, 499, 775, 934
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	653, 912
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	278, 641, 698
AhdI	GACNNNNNGTC	1 cut(s)	476
AluBI	AGCT	5 cut(s)	166, 283, 629, 716, 971
AluI	AGCT	5 cut(s)	166, 283, 629, 716, 971
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	572, 688
AlwI	GGATC	2 cut(s)	142, 437
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	3 cut(s)	307, 480, 930
AoxI	GGCC	1 cut(s)	799
ApoI	RAATTY	4 cut(s)	234, 499, 775, 934
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	847
AsuC2I	CCSGG	1 cut(s)	913
AsuHPI	GGTGA	2 cut(s)	167, 821
AvaII	GGWCC	1 cut(s)	847
BanI	GGYRCC	1 cut(s)	821
BauI	CACGAG	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	531
BccI	CCATC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	572, 688
BfaI	CTAG	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	913
Bme18I	GGWCC	1 cut(s)	847
BmeRI	GACNNNNNGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	1 cut(s)	823
BmrFI	CCNGG	1 cut(s)	913
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	913
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	3 cut(s)	307, 480, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 912
Bse1I	ACTGG	3 cut(s)	658, 677, 966
BseAI	TCCGGA	3 cut(s)	307, 480, 930
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	2 cut(s)	436, 864
BseLI	CCNNNNNNNGG	2 cut(s)	653, 912
BseMII	CTCAG	2 cut(s)	215, 443
BseNI	ACTGG	3 cut(s)	658, 677, 966
BseRI	GAGGAG	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	801
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	4 cut(s)	308, 481, 912, 931
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	653, 912
BsmAI	GTCTC	2 cut(s)	572, 688
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	801
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	3 cut(s)	307, 480, 930
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	134, 199, 442
BspACI	CCGC	3 cut(s)	132, 518, 659
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	2 cut(s)	216, 444
BspEI	TCCGGA	3 cut(s)	307, 480, 930
BspLI	GGNNCC	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	142, 437
BspT107I	GGYRCC	1 cut(s)	821
BspTI	CTTAAG	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	658, 677, 966
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	3 cut(s)	134, 199, 442
BssSI	CACGAG	1 cut(s)	939
Bst2BI	CACGAG	1 cut(s)	939
Bst4CI	ACNGT	3 cut(s)	526, 599, 811
BstAFI	CTTAAG	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	224, 452, 467, 972
BstF5I	GGATG	2 cut(s)	436, 864
BstKTI	GATC	3 cut(s)	137, 202, 445
BstMAI	GTCTC	2 cut(s)	572, 688
BstMBI	GATC	3 cut(s)	134, 199, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 535, 626
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	911
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	436, 864
BtsI	GCAGTG	2 cut(s)	800, 884
BtsIMutI	CAGTG	4 cut(s)	246, 581, 800, 884
BveI	ACCTGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	289, 410, 515, 851
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	224, 452, 467, 972
DpnI	GATC	3 cut(s)	136, 201, 444
DpnII	GATC	3 cut(s)	134, 199, 442
DriI	GACNNNNNGTC	1 cut(s)	476
Eam1105I	GACNNNNNGTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	2 cut(s)	499, 934
FaeI	CATG	4 cut(s)	292, 413, 518, 854
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	288, 409, 514, 850
FauNDI	CATATG	2 cut(s)	424, 706
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	2 cut(s)	423, 851
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	801
HapII	CCGG	4 cut(s)	308, 481, 912, 931
Hin1II	CATG	4 cut(s)	292, 413, 518, 854
HindIII	AAGCTT	3 cut(s)	281, 714, 969
HinfI	GANTC	6 cut(s)	4, 274, 560, 586, 608, 917
HpaII	CCGG	4 cut(s)	308, 481, 912, 931
HphI	GGTGA	2 cut(s)	167, 821
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	5 cut(s)	225, 453, 505, 774, 922
Hpy188III	TCNNGA	8 cut(s)	203, 231, 308, 440, 481, 496, 931, 939
Hpy8I	GTNNAC	1 cut(s)	847
Hpy99I	CGWCG	2 cut(s)	126, 764
HpyAV	CCTTC	4 cut(s)	200, 361, 812, 871
HpyCH4III	ACNGT	3 cut(s)	526, 599, 811
HpyCH4IV	ACGT	2 cut(s)	121, 749
HpyCH4V	TGCA	6 cut(s)	118, 244, 620, 788, 854, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 535, 626
HpyF3I	CTNAG	4 cut(s)	224, 452, 467, 972
HpySE526I	ACGT	2 cut(s)	121, 749
Hsp92II	CATG	4 cut(s)	292, 413, 518, 854
Kpn2I	TCCGGA	3 cut(s)	307, 480, 930
Kzo9I	GATC	3 cut(s)	134, 199, 442
LweI	GCATC	1 cut(s)	873
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	121, 749
MalI	GATC	3 cut(s)	136, 201, 444
MboI	GATC	3 cut(s)	134, 199, 442
MboII	GAAGA	2 cut(s)	722, 748
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	9 cut(s)	234, 311, 428, 499, 543, 663, 775, 934, 951
MlyI	GAGTC	3 cut(s)	13, 569, 926
MnlI	CCTC	8 cut(s)	60, 63, 231, 408, 447, 541, 750, 835
MroI	TCCGGA	3 cut(s)	307, 480, 930
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	4 cut(s)	36, 261, 360, 720
MslI	CAYNNNNRTG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	4 cut(s)	308, 481, 912, 931
MspR9I	CCNGG	1 cut(s)	913
MunI	CAATTG	1 cut(s)	951
Mva1269I	GAATGC	1 cut(s)	768
MwoI	GCNNNNNNNGC	3 cut(s)	518, 535, 626
NciI	CCSGG	1 cut(s)	913
NdeI	CATATG	2 cut(s)	424, 706
NdeII	GATC	3 cut(s)	134, 199, 442
NlaIII	CATG	4 cut(s)	292, 413, 518, 854
NlaIV	GGNNCC	1 cut(s)	823
NspI	RCATGY	1 cut(s)	518
PaqCI	CACCTGC	1 cut(s)	611
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	274, 586, 608
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	3 cut(s)	12, 568, 925
PpsI	GAGTC	3 cut(s)	12, 568, 925
Psp1406I	AACGTT	1 cut(s)	749
PspN4I	GGNNCC	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	36, 261, 360, 720
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	134, 199, 442
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	3 cut(s)	13, 569, 926
ScrFI	CCNGG	1 cut(s)	913
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	873
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	359, 857
SmoI	CTYRAG	2 cut(s)	359, 857
Sse9I	AATT	9 cut(s)	234, 311, 428, 499, 543, 663, 775, 934, 951
SsiI	CCGC	3 cut(s)	132, 518, 659
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	911
TaaI	ACNGT	3 cut(s)	526, 599, 811
TaiI	ACGT	2 cut(s)	124, 752
TaqI	TCGA	3 cut(s)	381, 735, 759
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	9 cut(s)	234, 311, 428, 499, 543, 663, 775, 934, 951
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	274, 586, 608
Tru1I	TTAA	4 cut(s)	36, 261, 360, 720
Tru9I	TTAA	4 cut(s)	36, 261, 360, 720
TscAI	CASTG	4 cut(s)	246, 588, 800, 891
TspDTI	ATGAA	6 cut(s)	386, 398, 425, 441, 723, 890
TspRI	CASTG	4 cut(s)	246, 588, 800, 891
Van91I	CCANNNNNTGG	1 cut(s)	653
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	4 cut(s)	234, 499, 775, 934
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.