Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042868.1

Orthogroup ID

OG0007641

Physical Location & Seq

Genomic Coordinates Forward (+)

16672 .. 18201

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042868.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggaaaataaggatcaataccaacaatctccggaaccaaaatacgagtgccttctatttgatatagatgacaccctctatcccctgagttccggcatttcagtacaaatcaccaagaatattcaagaatatatgcttcataagcttgggatggaagaaagtacagttcctgaattgtgtctttcgttgtacaaggattatgggacgacaatggccggtcttaaggctcaaggctataactttgagtatgatgacttccacagttttgttcatgggaggttgccctacgatttgcttaagcctgaccatgttctgaggggtcttttacttagtctgcctgttcggaaagtaatctttacgaattcagataagaatcatgcccctacagtgctcaaaaggcttggaatagaggactgttttgagtcaatcatatgctttgagactctgaatcccaccaacagtgctgatgattctgctggtgcagaagaaactgaatttgtgcaacaaccaaataccgatgctgtaattccaaggagcccagttgtctgcaaaccatttgaaaatgcctttgaagaagcttttaagatagcaaacatcaaccctcaaagaacgttattctttgacgatagcattcgtaatttgcaaactgcaaaacaagtgggtctgcaaacagtatgggttggcgcctcccaccgaaccaaagatgtggatcatgcactggagagcatccacaatatgagggaggcattgccagaactctgggccgagcagtctgagaatgttagatattcgagagaggttgcaattgagacaccagtagaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_like

Protein Analysis

275

Amino Acids

31.28

Weight (kDa)

4.8

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59480 AT5G59480 AT5G59480 AT5G59480 AT5G59480
fragaria_vesca	FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780 FvH4_3g36780
malus_domestica	MD11G1097600.v1.1
prunus_persica	Prupe.6G072800_v2.0.a1
pyrus_communis	pycom03g07020 pycom11g08230
rosa_chinensis	RchiOBHm_Chr5g0065831
rosa_laevigata	RLG00000035820
rosa_multiflora	Rmu_sc0042868.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015320
rosa_rugosa	Rorug05G0374100
rosa_samantha	Rh5AG432800 Rh5BG449100 Rh5CG471300 Rh5DG462700
rosa_wichuraiana	Rw5G040590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AccIII	TCCGGA	1 cut(s)	31
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	2 cut(s)	21, 717
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	361, 494
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	3 cut(s)	105, 163, 191
AflII	CTTAAG	2 cut(s)	221, 296
AgsI	TTSAA	3 cut(s)	125, 560, 572
AluBI	AGCT	3 cut(s)	145, 578, 824
AluI	AGCT	3 cut(s)	145, 578, 824
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	434, 803
AlwI	GGATC	2 cut(s)	21, 717
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	2 cut(s)	213, 762
ApoI	RAATTY	2 cut(s)	361, 494
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	762
AsuHPI	GGTGA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	434, 803
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	687
BfrI	CTTAAG	2 cut(s)	221, 296
BmgT120I	GGNCC	1 cut(s)	762
BmiI	GGNNCC	3 cut(s)	36, 536, 685
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	508, 735
BmuI	ACTGGG	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	213
BsaBI	GATNNNNATC	2 cut(s)	372, 708
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	530
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	539, 723, 815
Bse3DI	GCAATG	1 cut(s)	746
Bse8I	GATNNNNATC	2 cut(s)	372, 708
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	156, 726
BseJI	GATNNNNATC	2 cut(s)	372, 708
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	3 cut(s)	77, 305, 765
BseNI	ACTGG	3 cut(s)	539, 723, 815
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	215, 764
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	32, 93, 216
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	434, 803
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	215, 764
Bsp1286I	GDGCHC	2 cut(s)	393, 539
Bsp13I	TCCGGA	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	13, 709
BspANI	GGCC	2 cut(s)	215, 764
BspCNI	CTCAG	3 cut(s)	78, 306, 766
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	36, 536, 685
BspPI	GGATC	2 cut(s)	21, 717
BspT107I	GGYRCC	1 cut(s)	683
BspTI	CTTAAG	2 cut(s)	221, 296
BsrDI	GCAATG	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	539, 723, 815
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	2 cut(s)	13, 709
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	530
Bst4CI	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
BstACI	GRCGYC	1 cut(s)	684
BstAFI	CTTAAG	2 cut(s)	221, 296
BstAUI	TGTACA	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	86, 314, 329, 774, 825
BstF5I	GGATG	2 cut(s)	156, 726
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	2 cut(s)	16, 712
BstMAI	GTCTC	2 cut(s)	434, 803
BstMBI	GATC	2 cut(s)	13, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 397
BstSFI	CTRYAG	1 cut(s)	384
BstXI	CCANNNNNNTGG	2 cut(s)	706, 759
BsuRI	GGCC	2 cut(s)	215, 764
BtsCI	GGATG	2 cut(s)	156, 726
BtsIMutI	CAGTG	3 cut(s)	393, 466, 716
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	762
Csp6I	GTAC	3 cut(s)	104, 162, 190
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	4 cut(s)	272, 308, 377, 713
CviQI	GTAC	3 cut(s)	104, 162, 190
DdeI	CTNAG	5 cut(s)	86, 314, 329, 774, 825
DinI	GGCGCC	1 cut(s)	685
DpnI	GATC	2 cut(s)	15, 711
DpnII	GATC	2 cut(s)	13, 709
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	539
EgeI	GGCGCC	1 cut(s)	685
EheI	GGCGCC	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	4 cut(s)	275, 311, 380, 716
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	271, 307, 376, 712
FauNDI	CATATG	1 cut(s)	431
FokI	GGATG	2 cut(s)	163, 713
FriOI	GRGCYC	1 cut(s)	539
GlaI	GCGC	1 cut(s)	685
GsuI	CTGGAG	1 cut(s)	740
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	2 cut(s)	215, 764
HapII	CCGG	3 cut(s)	32, 93, 216
HhaI	GCGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	275, 311, 380, 716
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	3 cut(s)	143, 576, 822
HinfI	GANTC	5 cut(s)	373, 422, 442, 448, 470
HpaII	CCGG	3 cut(s)	32, 93, 216
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	5 cut(s)	315, 345, 367, 447, 775
Hpy188III	TCNNGA	4 cut(s)	32, 125, 170, 792
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	8 cut(s)	482, 502, 549, 643, 650, 667, 716, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 397
HpyF3I	CTNAG	5 cut(s)	86, 314, 329, 774, 825
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	4 cut(s)	275, 311, 380, 716
HspAI	GCGC	1 cut(s)	684
KasI	GGCGCC	1 cut(s)	683
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	13, 709
LmnI	GCTCC	1 cut(s)	534
LweI	GCATC	2 cut(s)	508, 735
MaeII	ACGT	1 cut(s)	611
MalI	GATC	2 cut(s)	15, 711
MboI	GATC	2 cut(s)	13, 709
MboII	GAAGA	3 cut(s)	167, 497, 584
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	2 cut(s)	393, 539
MluCI	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
Mly113I	GGCGCC	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	431, 436
MnlI	CCTC	9 cut(s)	86, 270, 309, 403, 612, 697, 732, 736, 790
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	3 cut(s)	222, 297, 582
MspCI	CTTAAG	2 cut(s)	221, 296
MspI	CCGG	3 cut(s)	32, 93, 216
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	142, 397
NarI	GGCGCC	1 cut(s)	684
NdeI	CATATG	1 cut(s)	431
NdeII	GATC	2 cut(s)	13, 709
NlaIII	CATG	4 cut(s)	275, 311, 380, 716
NlaIV	GGNNCC	3 cut(s)	36, 536, 685
NmeAIII	GCCGAG	1 cut(s)	790
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	373, 448, 470
PleI	GAGTC	2 cut(s)	430, 436
PluTI	GGCGCC	1 cut(s)	687
PpsI	GAGTC	2 cut(s)	430, 436
Psp1406I	AACGTT	1 cut(s)	611
PspN4I	GGNNCC	3 cut(s)	36, 536, 685
PspPI	GGNCC	1 cut(s)	762
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	105, 163, 191
RsaNI	GTAC	3 cut(s)	104, 162, 190
SaqAI	TTAA	3 cut(s)	222, 297, 582
Sau3AI	GATC	2 cut(s)	13, 709
Sau96I	GGNCC	1 cut(s)	762
SchI	GAGTC	2 cut(s)	431, 436
SduI	GDGCHC	2 cut(s)	393, 539
SetI	ASST	6 cut(s)	147, 281, 580, 614, 801, 826
SfaNI	GCATC	2 cut(s)	508, 735
SfcI	CTRYAG	1 cut(s)	384
SfoI	GGCGCC	1 cut(s)	685
SmlI	CTYRAG	3 cut(s)	221, 228, 296
SmoI	CTYRAG	3 cut(s)	221, 228, 296
Sse9I	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
SspDI	GGCGCC	1 cut(s)	683
SspI	AATATT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	791
TasI	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
TatI	WGTACW	3 cut(s)	103, 161, 189
TfiI	GAWTC	3 cut(s)	373, 448, 470
Tru1I	TTAA	3 cut(s)	222, 297, 582
Tru9I	TTAA	3 cut(s)	222, 297, 582
TscAI	CASTG	3 cut(s)	393, 466, 723
TspDTI	ATGAA	2 cut(s)	128, 260
TspRI	CASTG	3 cut(s)	393, 466, 723
Vha464I	CTTAAG	2 cut(s)	221, 296
XapI	RAATTY	2 cut(s)	361, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.