AT5G59865

Glycine-rich RNA-binding protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24114599 .. 24115349
751 bp
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UTR
Exon/CDS
Intron
AT5G59865.1

Sequence Viewer

Length: 342 bp
ATGTTCTCTTCTCTCTTTGTTCGTTGTAATTCCATAACATCTCCATTACGATGTTTTGCGATTCGAGGATCTTGTTCTAAATTATTCGTCGGAGGGCTATCTTATGACACTAATGAACCTGTTTTGAAGAATGAGTTTGAAAAGTATGGTGAGATTATAGAAGTGAAAGTAATATGCGATCACAAGAGTGGGAAATCAAAAGGTTATGGTTTTGTGTTATTTGATTCAGAAGAAGCTGCTGCAAGTGCCTTAGCTTCCATGGACAATCAGTTATTAGAAGGAAGAAACATCAGAGTCGAATATGCTCAACCTAAAAGAAGTTTATACCAGAATCCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.64

Weight (kDa)

8.35

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 26 - 87 1.2e-06 RNA recognition motif
RRM_1 PF00076 28 - 98 4.1e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011971)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AgsI TTSAA 2 cut(s) 127, 140
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 2 cut(s) 236, 254
AluI AGCT 2 cut(s) 236, 254
AlwI GGATC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 236, 239
AsuHPI GGTGA 1 cut(s) 161
BbvI GCAGC 2 cut(s) 223, 226
BisI GCNGC 2 cut(s) 237, 240
BlsI GCNGC 2 cut(s) 238, 241
Bpu10I CCTNAGC 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 223, 226
Bsp143I GATC 2 cut(s) 68, 178
Bsp19I CCATGG 1 cut(s) 258
BspPI GGATC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 68, 178
BssT1I CCWWGG 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 258
BstKTI GATC 2 cut(s) 71, 181
BstMBI GATC 2 cut(s) 68, 178
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 223, 226
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 258
CviAII CATG 1 cut(s) 259
CviJI RGCY 3 cut(s) 97, 236, 254
CviKI_1 RGCY 3 cut(s) 97, 236, 254
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 70, 180
DpnII GATC 2 cut(s) 68, 178
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 262
FaiI YATR 9 cut(s) 35, 105, 147, 158, 175, 207, 260, 303, 325
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 237, 240
Fsp4HI GCNGC 2 cut(s) 237, 240
GluI GCNGC 2 cut(s) 237, 240
Hin1II CATG 1 cut(s) 262
HinfI GANTC 4 cut(s) 61, 224, 294, 331
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 92, 229, 293, 336
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 2 cut(s) 68, 178
LpnPI CCDG 1 cut(s) 132
Lsp1109I GCAGC 2 cut(s) 223, 226
MalI GATC 2 cut(s) 70, 180
MboI GATC 2 cut(s) 68, 178
MboII GAAGA 3 cut(s) 139, 242, 294
MflI RGATCY 1 cut(s) 68
MluCI AATT 2 cut(s) 28, 80
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 59, 86
MslI CAYNNNNRTG 2 cut(s) 49, 186
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 258
NdeII GATC 2 cut(s) 68, 178
NlaIII CATG 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 186
PfeI GAWTC 3 cut(s) 61, 224, 331
PkrI GCNGC 2 cut(s) 238, 241
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 49, 186
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 2 cut(s) 68, 178
SchI GAGTC 1 cut(s) 303
SetI ASST 5 cut(s) 121, 205, 238, 256, 313
SgeI CNNG 6 cut(s) 77, 84, 131, 196, 255, 271
SmiMI CAYNNNNRTG 2 cut(s) 49, 186
Sse9I AATT 2 cut(s) 28, 80
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 2 cut(s) 64, 297
TasI AATT 2 cut(s) 28, 80
TfiI GAWTC 3 cut(s) 61, 224, 331
TseI GCWGC 2 cut(s) 236, 239
TspDTI ATGAA 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.