Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011971

Physical Location & Seq

Genomic Coordinates Reverse (-)

30432693 .. 30435666

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGGCTTTCCTATGATACAAATGAACCTGTTCTTAAGGATGCTCTTGGAAAGCATGGTGCAATAATTGAAGTTAAAGTTATATGTGATCATGTGAGTGGGAAATCAAAAGGTTATGGATTTTTGAAGTTCACATCTGAAACTGAAGCCAGCAGTGCTTTAAAAGAAATGGATGGTCAGGTACTTGATGGCAGACAAATCCGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

70

Amino Acids

7.48

Weight (kDa)

6.05

Isoelectric Point (pI)

19.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	2 - 68	6.9e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59865
fragaria_vesca	FvH4_3g35300 FvH4_3g35320
malus_domestica	MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica	Prupe.6G082400_v2.0.a1
pyrus_communis	pycom03g08110
rosa_chinensis	RchiOBHm_Chr5g0063391
rosa_laevigata	RLG00000035632
rosa_multiflora	Rmu_sc0006795.1_g000006
rosa_roxburghii	Rroxscaffold_1G00017310
rosa_rugosa	Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha	Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana	Rw5G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	183
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	71, 127
Asp700I	GAANNNNTTC	1 cut(s)	30
BccI	CCATC	2 cut(s)	167, 182
BclI	TGATCA	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	31
BseGI	GGATG	2 cut(s)	46, 178
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	35
BssMI	GATC	1 cut(s)	88
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	46, 178
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	46, 178
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	2 cut(s)	56, 92
CviJI	RGCY	2 cut(s)	7, 149
CviKI_1	RGCY	2 cut(s)	7, 149
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	165
FaeI	CATG	2 cut(s)	59, 95
FaiI	YATR	6 cut(s)	15, 57, 83, 85, 93, 117
FatI	CATG	2 cut(s)	55, 91
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	2 cut(s)	53, 185
Hin1II	CATG	2 cut(s)	59, 95
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	59, 95
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	42, 163, 164
LweI	GCATC	1 cut(s)	31
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MluCI	AATT	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	36, 75, 161
MslI	CAYNNNNRTG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	59, 95
PdmI	GAANNNNTTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	36, 75, 161
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	3 cut(s)	31, 115, 183
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	7 cut(s)	41, 59, 68, 104, 162, 191, 197
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	202
TasI	AATT	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	36, 75, 161
Tru9I	TTAA	3 cut(s)	36, 75, 161
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.