RchiOBHm_Chr5g0063391

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011971
Physical Location & Seq
Reverse (-)
69130808 .. 69132914
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33950

Sequence Viewer

Length: 327 bp
ATGAGAGGGTTGAATGGCGGAGGAGTTAGCATTTGGCGGAAGTGGAGTATATCTGCCAGGAATTCATGGGCACGCCATTCCTCTACTAAATTGTTCGTCGGAGGGCTTTGCTATGATACAAATGAACCTGTTCTTAAGGATGCTTTTGGAAAGCATGGTGAAATTATTGAAGTTAAAGTTATATGCGATCGTGTGAGTGGGAAATCAAAAGGATATGGGTTTGTGAAGTTTTCATCTGAAACTGAAGCCAGCACTGCTCTAAAAGAAATGGATGGTCAGTTACTGGATGGCAGACAGATCCGCTTGGAATTTGCACACAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

9.43

Isoelectric Point (pI)

21.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 31 - 101 5.9e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 37, 301
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 2 cut(s) 61, 308
AcuI CTGAAG 1 cut(s) 264
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 13, 170
AjnI CCWGG 1 cut(s) 56
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 283
ApoI RAATTY 2 cut(s) 61, 308
Asp700I GAANNNNTTC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 73
BccI CCATC 2 cut(s) 266, 281
BciT130I CCWGG 1 cut(s) 58
BfrI CTTAAG 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 145, 277, 292
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 187, 297
BspACI CCGC 3 cut(s) 18, 37, 301
BspPI GGATC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 288
BssMI GATC 2 cut(s) 187, 297
Bst2UI CCWGG 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 73, 250
BstF5I GGATG 3 cut(s) 145, 277, 292
BstKTI GATC 2 cut(s) 190, 300
BstMBI GATC 2 cut(s) 187, 297
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BtsCI GGATG 3 cut(s) 145, 277, 292
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 73, 250
CaiI CAGNNNCTG 1 cut(s) 283
CviAII CATG 2 cut(s) 66, 155
CviJI RGCY 2 cut(s) 106, 248
CviKI_1 RGCY 2 cut(s) 106, 248
DpnI GATC 2 cut(s) 189, 299
DpnII GATC 2 cut(s) 187, 297
EciI GGCGGA 2 cut(s) 33, 52
Eco57I CTGAAG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 69, 158
FaiI YATR 7 cut(s) 50, 67, 114, 156, 182, 184, 216
FatI CATG 2 cut(s) 65, 154
FokI GGATG 3 cut(s) 152, 284, 299
Hin1II CATG 2 cut(s) 69, 158
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 101, 238
Hpy99I CGWCG 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 69, 158
Kzo9I GATC 2 cut(s) 187, 297
LpnPI CCDG 5 cut(s) 43, 70, 141, 262, 269
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 279
MalI GATC 2 cut(s) 189, 299
MboI GATC 2 cut(s) 187, 297
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 61, 89, 162, 308
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 14, 91, 95
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 135, 174
MspCI CTTAAG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 187, 297
NlaIII CATG 2 cut(s) 69, 158
PdmI GAANNNNTTC 1 cut(s) 129
Ple19I CGATCG 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 135, 174
Sau3AI GATC 2 cut(s) 187, 297
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 73
SetI ASST 1 cut(s) 130
SfaNI GCATC 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 4 cut(s) 61, 89, 162, 308
SsiI CCGC 3 cut(s) 18, 37, 301
StyD4I CCNGG 1 cut(s) 56
TasI AATT 4 cut(s) 61, 89, 162, 308
Tru1I TTAA 2 cut(s) 135, 174
Tru9I TTAA 2 cut(s) 135, 174
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 54, 138, 222
TspRI CASTG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 2 cut(s) 61, 308
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.