FvH4_3g35300

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011971
Physical Location & Seq
Reverse (-)
30430018 .. 30431571
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35300.t1

Sequence Viewer

Length: 327 bp
ATGAGAGGGTTAAATGGCGGAGGAGTTGGCATTTGGCGGGAATGGAGTATATTGGCCAGGAAATCATGGGCACGTCTCTCCTCTACCAAATTGTTCGTCGGGGGGCTTTCCTATGATACAAATGAACCTGTTCTTAAGGATGCTTTTGGAAAGCATGGTGAAATAATTGAAGTTAAAGTTATATGTGATCATGTGAGTGGGAAATCAAAAGGTTATGGATTTGTGAAGTTCACATCTGAAACCGAAGCCAGCACTGCTCTAAAAGAAATGGATGGTCAGGTACTGGATGGCAGACAAATCCGCTTGGAATTTGCACACAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

109

Amino Acids

11.89

Weight (kDa)

9.13

Isoelectric Point (pI)

15.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 31 - 101 2.6e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 37, 301
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 282
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 170
AjiI CACGTC 1 cut(s) 74
AjnI CCWGG 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 73
BalI TGGCCA 1 cut(s) 56
BccI CCATC 2 cut(s) 266, 281
BciT130I CCWGG 1 cut(s) 58
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 80
BfrI CTTAAG 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 145, 277, 292
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 2 cut(s) 36, 70
BseSI GKGCMC 1 cut(s) 73
BshFI GGCC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 18, 37, 301
BspANI GGCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 288
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 3 cut(s) 145, 277, 292
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 56
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 3 cut(s) 145, 277, 292
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 283
Csp6I GTAC 1 cut(s) 281
CviAII CATG 3 cut(s) 66, 155, 191
CviJI RGCY 3 cut(s) 56, 106, 248
CviKI_1 RGCY 3 cut(s) 56, 106, 248
CviQI GTAC 1 cut(s) 281
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 54
EciI GGCGGA 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 3 cut(s) 69, 158, 194
FaiI YATR 8 cut(s) 50, 67, 114, 156, 182, 184, 192, 216
FatI CATG 3 cut(s) 65, 154, 190
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 187
FokI GGATG 3 cut(s) 152, 284, 299
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 3 cut(s) 69, 158, 194
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 69, 158, 194
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 43, 70, 141, 262, 263, 269
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 73
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 89, 165, 308
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 2 cut(s) 14, 91
Mox20I TGGCCA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 11, 135, 174
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 69, 158, 194
PdmI GAANNNNTTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 11, 135, 174
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 76, 130, 214, 282
SfaNI GCATC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 89, 165, 308
SsiI CCGC 3 cut(s) 18, 37, 301
StyD4I CCNGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 76
TasI AATT 3 cut(s) 89, 165, 308
Tru1I TTAA 3 cut(s) 11, 135, 174
Tru9I TTAA 3 cut(s) 11, 135, 174
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.