Rh5AG416400

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011971
Physical Location & Seq
Reverse (-)
71811843 .. 71814174
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG416400.1

Sequence Viewer

Length: 312 bp
ATGAGAGGGTTGAATGGCGGAGGAGTTAGCATTTGGCGGAAGTGGAGTATATCTGCCAGGAATTCATGGGCACGCCATTCCTCTACCAAATTGTTCGTCGGAGGGCTTTGCTATGATACAAATGAACCTGTTCTTAAGGATGCTTTTGGAAAGCATGGTGAAATTATTGAAGTTAAAGTTATATGCGATCGTGTGAGTGGGAAATCAAAAGGATATGGGTTTGTGAAGTTTTCATCTGAAACTGAAGCCAGCACTGCTCTAAAAGAAATGGATGGTCAGGTAACTCTATCCGTCGTGGTTATATCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

9.26

Isoelectric Point (pI)

17.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 31 - 94 1.2e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 37
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 264
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 13, 170
AjnI CCWGG 1 cut(s) 56
ApoI RAATTY 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 73
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 58
BfrI CTTAAG 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 130
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 145, 277
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 2 cut(s) 18, 37
BspTI CTTAAG 1 cut(s) 134
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 73, 250
BstF5I GGATG 2 cut(s) 145, 277
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 145, 277
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 73, 250
CviAII CATG 2 cut(s) 66, 155
CviJI RGCY 2 cut(s) 106, 248
CviKI_1 RGCY 2 cut(s) 106, 248
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 33, 52
Eco57I CTGAAG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 69, 158
FaiI YATR 8 cut(s) 50, 67, 114, 156, 182, 184, 216, 302
FatI CATG 2 cut(s) 65, 154
FokI GGATG 2 cut(s) 152, 284
Hin1II CATG 2 cut(s) 69, 158
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 101, 238
Hpy99I CGWCG 2 cut(s) 101, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 69, 158
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 43, 70, 141, 262, 263
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 61, 89, 162
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 14, 91, 95
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 135, 174
MspCI CTTAAG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 69, 158
PdmI GAANNNNTTC 1 cut(s) 129
Ple19I CGATCG 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PvuI CGATCG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 135, 174
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 73
SetI ASST 2 cut(s) 130, 282
SfaNI GCATC 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 61, 89, 162
SsiI CCGC 2 cut(s) 18, 37
StyD4I CCNGG 1 cut(s) 56
TasI AATT 3 cut(s) 61, 89, 162
Tru1I TTAA 2 cut(s) 135, 174
Tru9I TTAA 2 cut(s) 135, 174
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 54, 138, 222
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.