MD03G1098300.v1.1

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011971
Physical Location & Seq
Forward (+)
8427204 .. 8430303
3100 bp
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UTR
Exon/CDS
Intron
MD03G1098300.v1.1.491

Sequence Viewer

Length: 399 bp
ATGAGAGGCGCAAATGGCGTAGTTGGTATTCTGCGCACGTCTGTCCTGGCCAGGATTTTATTGACTCGCCACTCTTGCTCCAAATTGTTTGTTGCAGGGCTTTCCTGGGATACAAATGAACCTGTTCTTAAGGAAGCTTTCGGAAAACATGGTGAAATAATTGAAGTTAAAGTTATTTGTGATCATGTGAGTGGGAAATCGAGAGGGTATGGATTTGTGAAATTTACCTCTGAAAGTGAAGCCACCATTGCTCTCAAGGAGATGGATGGTCAGGTTCTGGATGGCAGACAAATCCGCTTGCAATTTGCACACAAGGAGTACAGTGGATTGGAGGGGGCATGCAGCATGCCGCATGCTGTGAGTATGGGTGGGCACGATCTGAATCCAGATGGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

133

Amino Acids

14.33

Weight (kDa)

7.79

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 29 - 99 1.6e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 35
AciI CCGC 2 cut(s) 295, 350
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 320
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 164
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 3 cut(s) 45, 50, 104
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 11, 36
AsuHPI GGTGA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 354
BccI CCATC 4 cut(s) 256, 260, 275, 383
BciT130I CCWGG 3 cut(s) 47, 52, 106
BciVI GTATCC 1 cut(s) 103
BclI TGATCA 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 2 cut(s) 343, 350
BlsI GCNGC 2 cut(s) 344, 351
Bme1390I CCNGG 3 cut(s) 47, 52, 106
BmgBI CACGTC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 47, 52, 106
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 3 cut(s) 47, 52, 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 271, 286
BseJI GATNNNNATC 1 cut(s) 381
BseMI GCAATG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 1 cut(s) 50
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 181, 376
BspACI CCGC 2 cut(s) 295, 350
BspANI GGCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 181, 376
Bst2UI CCWGG 3 cut(s) 47, 52, 106
Bst4CI ACNGT 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 299, 340, 347, 354
BstF5I GGATG 2 cut(s) 271, 286
BstHHI GCGC 2 cut(s) 11, 36
BstKTI GATC 2 cut(s) 184, 379
BstMBI GATC 2 cut(s) 181, 376
BstMWI GCNNNNNNNGC 3 cut(s) 15, 75, 248
BstNI CCWGG 3 cut(s) 47, 52, 106
BstNSI RCATGY 3 cut(s) 342, 349, 356
BstSCI CCNGG 3 cut(s) 45, 50, 104
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 271, 286
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 4 cut(s) 299, 340, 347, 354
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 2 cut(s) 11, 36
Csp6I GTAC 1 cut(s) 319
CviAII CATG 5 cut(s) 149, 185, 339, 346, 353
CviJI RGCY 4 cut(s) 50, 100, 137, 242
CviKI_1 RGCY 4 cut(s) 50, 100, 137, 242
CviQI GTAC 1 cut(s) 319
DpnI GATC 2 cut(s) 183, 378
DpnII GATC 2 cut(s) 181, 376
EaeI YGGCCR 1 cut(s) 48
EcoRII CCWGG 3 cut(s) 45, 50, 104
FaeI CATG 5 cut(s) 152, 188, 342, 349, 356
FaiI YATR 7 cut(s) 150, 186, 210, 340, 347, 354, 365
FatI CATG 5 cut(s) 148, 184, 338, 345, 352
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 343, 350
FokI GGATG 2 cut(s) 278, 293
Fsp4HI GCNGC 2 cut(s) 343, 350
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 2 cut(s) 10, 35
GluI GCNGC 2 cut(s) 343, 350
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 2 cut(s) 11, 36
Hin1II CATG 5 cut(s) 152, 188, 342, 349, 356
Hin6I GCGC 2 cut(s) 9, 34
HinP1I GCGC 2 cut(s) 9, 34
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 64, 382
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 143, 232, 381
Hpy188III TCNNGA 3 cut(s) 201, 278, 386
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 95, 301, 308, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 75, 248
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 5 cut(s) 152, 188, 342, 349, 356
HspAI GCGC 2 cut(s) 9, 34
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 376
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 354
MaeII ACGT 1 cut(s) 38
MalI GATC 2 cut(s) 183, 378
MboI GATC 2 cut(s) 181, 376
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 83, 159, 221, 302
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 3 cut(s) 197, 238, 325
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 50
MseI TTAA 2 cut(s) 129, 168
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 128
MspR9I CCNGG 3 cut(s) 47, 52, 106
MvaI CCWGG 3 cut(s) 47, 52, 106
MwoI GCNNNNNNNGC 3 cut(s) 15, 75, 248
NdeII GATC 2 cut(s) 181, 376
NlaIII CATG 5 cut(s) 152, 188, 342, 349, 356
NsbI TGCGCA 1 cut(s) 35
NspI RCATGY 3 cut(s) 342, 349, 356
PaeI GCATGC 3 cut(s) 342, 349, 356
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 2 cut(s) 344, 351
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 3 cut(s) 45, 50, 104
PspGI CCWGG 3 cut(s) 45, 50, 104
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 129, 168
SatI GCNGC 2 cut(s) 343, 350
Sau3AI GATC 2 cut(s) 181, 376
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 47, 52, 106
SduI GDGCHC 1 cut(s) 375
SetI ASST 5 cut(s) 41, 124, 139, 230, 276
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 128, 254
SmoI CTYRAG 2 cut(s) 128, 254
SphI GCATGC 3 cut(s) 342, 349, 356
Sse9I AATT 4 cut(s) 83, 159, 221, 302
SsiI CCGC 2 cut(s) 295, 350
StyD4I CCNGG 3 cut(s) 45, 50, 104
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 200
TasI AATT 4 cut(s) 83, 159, 221, 302
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 129, 168
Tru9I TTAA 2 cut(s) 129, 168
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 328
Vha464I CTTAAG 1 cut(s) 128
XapI RAATTY 1 cut(s) 221
XceI RCATGY 3 cut(s) 342, 349, 356
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.