pycom03g08110

Glycine-rich RNA-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
6516950 .. 6518923
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g08110.3

Sequence Viewer

Length: 402 bp
ATGAGAGGCGCAAATGGCGTAGTTGGTATTCTGCGCACGTCTGTCCTGGCCAGGATTTTATTGACTCGCCACTCTTGCTCCAAATTGTTCGTTGCAGGGCTTTCCTGGGATACAAATGAACCTGTTCTTAAGGAAGCTTTTGGAAAACATGGTGAAATAATTGAAGTTAAAGTTATATGTGATCATGTGAGTGGGAAATCGAGGGGGTATGGATTTGTGAAATTTACCTCTGAAGGTGAAGCAACCATTGCTCTCAAGGAGATGGATGGTCAGCTACGTTCTGGATGGCAGACAAATCCGATTGCAATTTGCACACAAGGAGTAGTGACATTGATCTCAGGTACAGTGGATTGGAGGGGGCATGCTGTGGTAGGTGGTGGTAACGAGCAAGTCCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

14.26

Weight (kDa)

8.54

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011971)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 2 cut(s) 221, 396
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 343
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 164
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 3 cut(s) 45, 50, 104
AluBI AGCT 2 cut(s) 137, 274
AluI AGCT 2 cut(s) 137, 274
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 221, 396
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 11, 36
AsuHPI GGTGA 2 cut(s) 164, 248
BalI TGGCCA 1 cut(s) 50
BccI CCATC 3 cut(s) 256, 260, 279
BciT130I CCWGG 3 cut(s) 47, 52, 106
BciVI GTATCC 1 cut(s) 103
BclI TGATCA 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 47, 52, 106
BmgBI CACGTC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 47, 52, 106
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 47, 52, 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 271, 290
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 50
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 181, 333
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 181, 333
Bst2UI CCWGG 3 cut(s) 47, 52, 106
Bst4CI ACNGT 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 2 cut(s) 271, 290
BstHHI GCGC 2 cut(s) 11, 36
BstKTI GATC 2 cut(s) 184, 336
BstMBI GATC 2 cut(s) 181, 333
BstMWI GCNNNNNNNGC 3 cut(s) 15, 75, 248
BstNI CCWGG 3 cut(s) 47, 52, 106
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 45, 50, 104
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 271, 290
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 2 cut(s) 11, 36
Csp6I GTAC 1 cut(s) 342
CviAII CATG 3 cut(s) 149, 185, 362
CviJI RGCY 4 cut(s) 50, 100, 137, 274
CviKI_1 RGCY 4 cut(s) 50, 100, 137, 274
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 1 cut(s) 337
DpnI GATC 2 cut(s) 183, 335
DpnII GATC 2 cut(s) 181, 333
EaeI YGGCCR 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 252
EcoRII CCWGG 3 cut(s) 45, 50, 104
FaeI CATG 3 cut(s) 152, 188, 365
FaiI YATR 6 cut(s) 150, 176, 178, 186, 210, 363
FatI CATG 3 cut(s) 148, 184, 361
FbaI TGATCA 1 cut(s) 181
FokI GGATG 2 cut(s) 278, 297
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 2 cut(s) 10, 35
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 2 cut(s) 11, 36
Hin1II CATG 3 cut(s) 152, 188, 365
Hin6I GCGC 2 cut(s) 9, 34
HinP1I GCGC 2 cut(s) 9, 34
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 64
HphI GGTGA 2 cut(s) 164, 248
Hpy188I TCNGA 2 cut(s) 232, 300
Hpy188III TCNNGA 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 38, 277
HpyCH4V TGCA 3 cut(s) 95, 305, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 75, 248
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 2 cut(s) 38, 277
Hsp92II CATG 3 cut(s) 152, 188, 365
HspAI GCGC 2 cut(s) 9, 34
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 333
LmnI GCTCC 1 cut(s) 83
MaeII ACGT 2 cut(s) 38, 277
MaeIII GTNAC 2 cut(s) 325, 380
MalI GATC 2 cut(s) 183, 335
MboI GATC 2 cut(s) 181, 333
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 5 cut(s) 83, 159, 221, 306, 396
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 3 cut(s) 195, 238, 348
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 129, 168, 400
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 128
MspR9I CCNGG 3 cut(s) 47, 52, 106
MvaI CCWGG 3 cut(s) 47, 52, 106
MwoI GCNNNNNNNGC 3 cut(s) 15, 75, 248
NdeII GATC 2 cut(s) 181, 333
NlaIII CATG 3 cut(s) 152, 188, 365
NmuCI GTSAC 1 cut(s) 325
NsbI TGCGCA 1 cut(s) 35
NspI RCATGY 1 cut(s) 365
PaeI GCATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 123
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 3 cut(s) 45, 50, 104
PspGI CCWGG 3 cut(s) 45, 50, 104
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 129, 168, 400
Sau3AI GATC 2 cut(s) 181, 333
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 47, 52, 106
SetI ASST 9 cut(s) 41, 124, 139, 230, 238, 276, 280, 343, 376
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 128, 254
SmoI CTYRAG 2 cut(s) 128, 254
SphI GCATGC 1 cut(s) 365
Sse9I AATT 5 cut(s) 83, 159, 221, 306, 396
StyD4I CCNGG 3 cut(s) 45, 50, 104
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 41, 280
TaqI TCGA 1 cut(s) 200
TasI AATT 5 cut(s) 83, 159, 221, 306, 396
Tru1I TTAA 3 cut(s) 129, 168, 400
Tru9I TTAA 3 cut(s) 129, 168, 400
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 351
Vha464I CTTAAG 1 cut(s) 128
XapI RAATTY 2 cut(s) 221, 396
XceI RCATGY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.