MD11G1144700.v1.1

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011971
Physical Location & Seq
Forward (+)
13421051 .. 13423854
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1144700.v1.1.491

Sequence Viewer

Length: 378 bp
ATGAGATGCGCAAATGGCGTAGTTGGAATTCTGCGCATGTCTGTCTTGGCCAGGATTTTACTCACTCGCCACTCCTGCTCCAAATTGTTCGTTTCAGGACTTTCCTGGGATACAAACGAACCTGTTCTTAAGGAAGCTTTTGGAAAACATGGTGAAATAATTGAAGTTAAAGTTATATGTGATCACGTGAGTGGGAAATCGAGAGGTTATGGATTTGTGAAGTTTACTTCTGAAAGTGAAGCCACCACTGCTCTCAAGGAGATGGATGGTTCTGGATGGCAGACAAATCCGGTTGCAATTTGCACACAAGGAATAGTGACATTGATTTCAGTGTATAGCGTCTCCCATCTGCCAGTATGTCAAATGTTTAAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

8.67

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 29 - 91 1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 10, 35
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 27
AcvI CACGTG 1 cut(s) 187
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 2 cut(s) 50, 104
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 346
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 11, 36
AsuHPI GGTGA 1 cut(s) 164
BalI TGGCCA 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 187
BccI CCATC 4 cut(s) 256, 260, 270, 354
BciT130I CCWGG 2 cut(s) 52, 106
BciVI GTATCC 1 cut(s) 103
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 346
BfrI CTTAAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 52, 106
BmrFI CCNGG 2 cut(s) 52, 106
BpuEI CTTGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 52, 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 271, 281
BseNI ACTGG 1 cut(s) 353
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 346
BsmBI CGTCTC 1 cut(s) 346
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 52, 106
BstAFI CTTAAG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 187
BstF5I GGATG 2 cut(s) 271, 281
BstHHI GCGC 2 cut(s) 11, 36
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 15, 75, 248
BstNI CCWGG 2 cut(s) 52, 106
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 50, 104
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 271, 281
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 336
CfoI GCGC 2 cut(s) 11, 36
CseI GACGC 1 cut(s) 328
CviAII CATG 2 cut(s) 37, 149
CviJI RGCY 3 cut(s) 50, 137, 242
CviKI_1 RGCY 3 cut(s) 50, 137, 242
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 50, 104
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 2 cut(s) 40, 152
FaiI YATR 7 cut(s) 38, 150, 176, 178, 210, 336, 358
FatI CATG 2 cut(s) 36, 148
FbaI TGATCA 1 cut(s) 181
FokI GGATG 2 cut(s) 278, 288
FspI TGCGCA 2 cut(s) 10, 35
GlaI GCGC 2 cut(s) 10, 35
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 328
HhaI GCGC 2 cut(s) 11, 36
Hin1II CATG 2 cut(s) 40, 152
Hin6I GCGC 2 cut(s) 9, 34
HinP1I GCGC 2 cut(s) 9, 34
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 1 cut(s) 290
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 96, 201, 273
Hpy8I GTNNAC 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 296, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 75, 248
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 40, 152
HspAI GCGC 2 cut(s) 9, 34
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 83
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 27, 83, 159, 297
MluNI TGGCCA 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 1 cut(s) 197
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 50
MseI TTAA 3 cut(s) 129, 168, 369
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 52, 106
MvaI CCWGG 2 cut(s) 52, 106
MwoI GCNNNNNNNGC 3 cut(s) 15, 75, 248
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 40, 152
NmuCI GTSAC 1 cut(s) 316
NsbI TGCGCA 2 cut(s) 10, 35
NspI RCATGY 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 123
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 50, 104
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 2 cut(s) 50, 104
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 129, 168, 369
Sau3AI GATC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 52, 106
SetI ASST 4 cut(s) 124, 139, 189, 208
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 128, 254
SmoI CTYRAG 2 cut(s) 128, 254
Sse9I AATT 4 cut(s) 27, 83, 159, 297
StyD4I CCNGG 2 cut(s) 50, 104
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 200
TasI AATT 4 cut(s) 27, 83, 159, 297
Tru1I TTAA 3 cut(s) 129, 168, 369
Tru9I TTAA 3 cut(s) 129, 168, 369
TscAI CASTG 2 cut(s) 253, 336
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspRI CASTG 2 cut(s) 253, 336
Vha464I CTTAAG 1 cut(s) 128
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.