Rorug05G0357000

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011971
Physical Location & Seq
Forward (+)
45222863 .. 45228898
6036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0357000.1

Sequence Viewer

Length: 3051 bp
ATGCAGACAATATGCTTCATGTTGTTTTTGTTGTTGGTAGTAATTGCAGCATCAGGGCAGTCAGATTTAGATGCACTCTTAGAGCTCAAAAAAGGGATTCAGAAAGACCCTTCTGGCCAAGTTCTTGTTTCATGGGATTCAAAGTCCTTGGCCTCTGATGGATGCCCCCTCAATTGGTTTGGGATAGTTTGTAGTGATGGCCTTGTCACATCGATTTCTATAAACGATATTGGCCTGGTTGGCGAGTTCAGTTTTTCGGCCATTGCCGGCCTTAAAGTGCTGCGCAATTTATCACTCTCAGACAACCAGCTCACAGGGGCTATCTCAAAGGTCGCTCTGATTCAGTCTCTAGAGCATTTAGATCTCTCACGCAATTTGTTTCATGGGTTAATACCATCTGGCTTAGCAGACTTAAAGCATTTAGCGCTTTTGAATCTGTCTTCAAATCAATTTGAAGGCATTTTCCCCTCTGGTTTTGGGAAACTTGAACAGCTGAGGTACATTGATGTTCGAGCTAATGCCTTGTCTGGGGATATCATGACTTTTCTATCCCAAATGGGTAGCGTGGTTCATGTTGATCTAAGTAGCAATCTGTTTTCTGGTTCACTGGATTTGGAAATTGGTAACTCCTCTTTTGTTTCTTCTGTTCAATATTTGAATGTAAGTCACAATTCCTTGGCTGGAGAGCTTTTTCCTCACGATGGAATGCCATATTTTGATAGTTTGGAGGTGTTTGATGCAAGTGATAATCAGTTAGTTGGTCCTATACCTTCCTTCAATTTTGTTGTCTCTCTTCGTATACTTCGGCTCGGAAGCAACCAGCTATCAGGTTCTCTACCGGAAGCTCTGTTGCAAGGAAGCTCAATGCTCTTGTCTGAATTGGATCTTAGTCTTAATCATCTTGAAGGTCCAGTAGGAAGCATAACCTCTGCAACTCTGAAGAAGTTGAATATATCTTCAAATAAATTATCAGGGTCCTTGCCTGCCAATGTTGGCCACTGTGCCATCGTAGACCTCAGTAATAATAAGCTCACTGGTAACCTGTCCCGAATCCGTAGTTGGGGAAATTACATGGAAGTTATCCAACTAAGTTCAAATTCTTTGACAGGAAGCTTGCCTGGCCAAACATCCCAATTTTTGAGGCTAACTTCTTTTAAGATATCCAATAACTCATTAGAGGGTGTTCTTCCATCAGTATTGGGTACATACCCAGAACTAAAAGTGATAGATCTTAGCCTCAACCGGTTGCAAGGTTTTCTCCTTCCAAGCTTTTTCTCTTCAACAATATTGACTGATCTAAACTTGTCAGGCAACAATTTCTCTGGGTCCATACCTGTCCAGGAAATTACAATTGGTTCTACTCAAAATTTGAGCCTGGTGTCTCTAGATCTGTCAAATAATTCATTGAGTGGTCATTTGCCCCAAGAATTCAGCAAGTTTCATAGCTTGGTATATCTCAACCTGTCTGGTAATAATTTTGAAGGTATGATTCCTGAGAACCTTCCAGATGAACTGAAAGAATTCAACATCTCTTTGAATAATCTTTCTGGTCTTGTACCTGAAAATTTAAGGCACTTCCCTGCTTCAGCATTTTATCCAGGGAATTCTTTGCTGATGTTTCCTCATCCCCTATCATCACCAAACAATGTCCCAGATATGATCTCTAGAAATCACAGGTCTCCTATAAAAGCTGCTATTAGAATTGCCCTGATTGTAGGTTTGCTTGGTGGTGGTGCTATTGTAGCCCTCTCATGCATGATGATCTATTATAGGGCCCACTGTCAAGGATGTAGAAAGAGAGGTAAAAAAGCAAGCTGTGAAAAGAATGGTGTTGTGCAAGGGGACTCTTCCCTTTCTCATAGATCAGTACCTGGCAAAACTGAAGACTTAAAATCTTCATATGGTTTCCATCAAGACCCTTCGCCATCATCCGCAAGGAAGTCTACTCATAATGCTGGTGACACTTCATCAGTTCTAGAGAAGTCTAAACAATTGGGTCATCCTGAATCAACAAAGCTAGAGGAAGGGGTATCTTCTCCCATGTCTCTCTTATCACCTTCAAACCCATCGCCTTCGAAAAGCCAACAACCACTCAATAGTTCTGCTGTTCTCAACACTTGTTCTCCAGATAAACTAGCTGGTGATTTACATCTGTTTGATGGCTCCCTGGCATTCACAGCAGAAGAACTTTCATGTGCTCCCGCAGAAGCTATTGGAAGGAGTTGTCATGGAACAATGTACAAAGCAATGCTTGAGTCTGGTCGTGTAATTGCTGTCAAATGGTTAAGGGAGGGAATAGCAAAAGGAAGGAAAGAATTTGCTAGAGAAGTAAAGAAACTTGGGAGCATCCGCCATCCAAATCTAGTTTCTTTGCAGGGTTACTATTGGGGCCCAAAGGAGCATGAGAAACTTATTATATCAAATTATATCAATGCTGAATCTTTGGCCTTCTATCTCCATGAGGTTGAGCCAAGAAAACTCTCACCCTTGTCTCTCGAGGAACGGCTCAAGGTTTCTGTAGATGTTGCCCGATGTCTGAACTACCTCCATAATGAGAAGGCAATTCCTCATGGCAACCTCAAATCCACAAATATTCTACTAGAAACTCCTAATCATAATGCACTCCTTACAGATTATAGTATCCACCGAATATTGACTCCTGCTGGAACTACTGAGCAAGTTCTGAATGCAGGTGCTCTTGGCTATCGGCCCCCTGAATTTGCTAGTTCAAGTAGACCCTGCCCCTCATTGAAGAGTGATGTCTATGCATTTGGAGTGATCTTGTTGGAGCTCCTGACTGGAAAGAGTTCTGGGGAGATTGTCTCTGGCATACCAGGTGTGGTTGATCTGACAGATTGGGTGAGATTTTTGGCAGAAGAAAACCGTTCTTTTGAATGCCTTGACAGACTGATTCTGGAAAAGCACAGTATTAAGTACTCGCCTAGAGTTCTTGATGAATTGCTCCAGGTAGCTTTAAGATGTATCCTTCCAGCATCCGAGAGACCCGACATTAAAACTGTGTTTGAAGACCTTTCAAGAATAGTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1016

Amino Acids

110.19

Weight (kDa)

6.23

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 65 5e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 94 - 151 1.9e-06 Leucine rich repeat
LRR_8 PF13855 116 - 175 7.1e-10 Leucine rich repeat
LRR_8 PF13855 140 - 198 7.5e-06 Leucine rich repeat
LRR_8 PF13855 381 - 440 1.7e-06 Leucine rich repeat
LRR_8 PF13855 457 - 493 8.7e-06 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 736 - 1009 9.7e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 736 - 936 1.9e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59865
fragaria_vesca FvH4_3g35300 FvH4_3g35320
malus_domestica MD03G1098300.v1.1 MD11G1144700.v1.1
prunus_persica Prupe.6G082400_v2.0.a1
pyrus_communis pycom03g08110
rosa_chinensis RchiOBHm_Chr5g0063391
rosa_laevigata RLG00000035632
rosa_multiflora Rmu_sc0006795.1_g000006
rosa_roxburghii Rroxscaffold_1G00017310
rosa_rugosa Rorug05G0357000 Rorug05G0357100 Rorug05G0357200
rosa_samantha Rh5AG416400 Rh5BG431400 Rh5CG454700 Rh5DG444900
rosa_wichuraiana Rw5G039100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2681
Acc16I TGCGCA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 2681
AccI GTMKAC 4 cut(s) 799, 1011, 1943, 2734
AciI CCGC 3 cut(s) 1932, 2202, 2350
AclWI GGATC 1 cut(s) 891
AcoI YGGCCR 4 cut(s) 115, 258, 994, 1120
AcsI RAATTY 8 cut(s) 1096, 1366, 1427, 1520, 1564, 1603, 2315, 2717
AcuI CTGAAG 3 cut(s) 959, 1569, 1902
AfaI GTAC 7 cut(s) 500, 1204, 1557, 1869, 2240, 2936, 3047
AfeI AGCGCT 1 cut(s) 426
AfiI CCNNNNNNNGG 4 cut(s) 174, 528, 701, 1060
AgeI ACCGGT 1 cut(s) 1242
AjnI CCWGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
AjuI GAANNNNNNNTTGG 6 cut(s) 1042, 1074, 1335, 1367, 2350, 2382
Alw21I GWGCWC 4 cut(s) 87, 2200, 2698, 2793
Alw26I GTCTC 8 cut(s) 351, 793, 1386, 1683, 2049, 2496, 2827, 2995
AlwI GGATC 1 cut(s) 891
AlwNI CAGNNNCTG 1 cut(s) 1871
Ama87I CYCGRG 1 cut(s) 2495
Aor51HI AGCGCT 1 cut(s) 426
ApaI GGGCCC 2 cut(s) 1777, 2393
ApeKI GCWGC 3 cut(s) 47, 280, 1691
ApoI RAATTY 8 cut(s) 1096, 1366, 1427, 1520, 1564, 1603, 2315, 2717
AsiGI ACCGGT 1 cut(s) 1242
Asp700I GAANNNNTTC 2 cut(s) 1520, 2806
AspLEI GCGC 2 cut(s) 285, 427
AspS9I GGNCC 9 cut(s) 761, 908, 975, 1326, 1773, 1774, 2389, 2390, 2709
AsuHPI GGTGA 6 cut(s) 1629, 1970, 2046, 2153, 2475, 2872
AsuII TTCGAA 1 cut(s) 2075
AvaI CYCGRG 1 cut(s) 2495
AvaII GGWCC 4 cut(s) 761, 908, 975, 1326
BaeGI GKGCMC 2 cut(s) 1777, 2393
BalI TGGCCA 3 cut(s) 117, 996, 1122
BanII GRGCYC 4 cut(s) 87, 1777, 2393, 2793
BbsI GAAGAC 3 cut(s) 432, 1890, 3033
Bbv12I GWGCWC 4 cut(s) 87, 2200, 2698, 2793
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 59, 267, 1678
BceAI ACGGC 1 cut(s) 2519
BciT130I CCWGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
BciVI GTATCC 2 cut(s) 2651, 2993
BcoDI GTCTC 8 cut(s) 351, 793, 1386, 1683, 2049, 2496, 2827, 2995
BfmI CTRYAG 1 cut(s) 2517
BfoI RGCGCY 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 2681
BfuI GTATCC 2 cut(s) 2651, 2993
BglI GCCNNNNNGGC 1 cut(s) 240
BglII AGATCT 3 cut(s) 361, 1228, 1387
BisI GCNGC 3 cut(s) 48, 281, 1692
BlpI GCTNAGC 1 cut(s) 403
BlsI GCNGC 3 cut(s) 49, 282, 1693
BmcAI AGTACT 1 cut(s) 2936
Bme1390I CCNGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
Bme18I GGWCC 4 cut(s) 761, 908, 975, 1326
BmeT110I CYCGRG 1 cut(s) 2495
BmgT120I GGNCC 9 cut(s) 761, 908, 975, 1326, 1773, 1774, 2389, 2390, 2709
BmiI GGNNCC 7 cut(s) 976, 1327, 1775, 2164, 2390, 2391, 2711
BmrFI CCNGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
BmsI GCATC 6 cut(s) 59, 61, 152, 727, 2355, 3002
BpiI GAAGAC 3 cut(s) 432, 1890, 3033
BplI GAGNNNNNCTC 2 cut(s) 2807, 2839
BpmI CTGGAG 3 cut(s) 702, 2109, 2948
Bpu10I CCTNAGC 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 403
Bpu14I TTCGAA 1 cut(s) 2075
BpuEI CTTGAG 2 cut(s) 2273, 2492
Bsa29I ATCGAT 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 2148
BsaI GGTCTC 2 cut(s) 1683, 2995
BsaJI CCNNGG 4 cut(s) 147, 675, 1598, 2166
BsaWI WCCGGW 2 cut(s) 838, 1242
BsaXI ACNNNNNCTCC 2 cut(s) 2107, 2137
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 528, 701, 1060
Bse118I RCCGGY 2 cut(s) 266, 1242
Bse1I ACTGG 4 cut(s) 612, 911, 1039, 2803
Bse3DI GCAATG 2 cut(s) 261, 2253
Bse8I GATNNNNATC 1 cut(s) 2148
BseBI CCWGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 4 cut(s) 147, 675, 1598, 2166
BseGI GGATG 9 cut(s) 167, 1127, 1624, 1793, 1928, 1999, 2346, 2353, 2993
BseJI GATNNNNATC 1 cut(s) 2148
BseLI CCNNNNNNNGG 4 cut(s) 174, 528, 701, 1060
BseMI GCAATG 2 cut(s) 261, 2253
BseMII CTCAG 5 cut(s) 312, 485, 1030, 1485, 2664
BseNI ACTGG 4 cut(s) 612, 911, 1039, 2803
BseRI GAGGAG 1 cut(s) 619
BseSI GKGCMC 2 cut(s) 1777, 2393
BseXI GCAGC 3 cut(s) 59, 267, 1678
BshTI ACCGGT 1 cut(s) 1242
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 4 cut(s) 87, 2200, 2698, 2793
BsiHKCI CYCGRG 1 cut(s) 2495
BsiSI CCGG 3 cut(s) 267, 839, 1243
BslFI GGGAC 3 cut(s) 1030, 1634, 1856
BslI CCNNNNNNNGG 4 cut(s) 174, 528, 701, 1060
BsmAI GTCTC 8 cut(s) 351, 793, 1386, 1683, 2049, 2496, 2827, 2995
BsmFI GGGAC 3 cut(s) 1030, 1634, 1856
BsmI GAATGC 4 cut(s) 711, 2171, 2692, 2900
Bso31I GGTCTC 2 cut(s) 1683, 2995
BsoBI CYCGRG 1 cut(s) 2495
Bsp119I TTCGAA 1 cut(s) 2075
Bsp120I GGGCCC 2 cut(s) 1773, 2389
Bsp1286I GDGCHC 6 cut(s) 87, 1777, 2200, 2393, 2698, 2793
Bsp1407I TGTACA 1 cut(s) 2238
Bsp1720I GCTNAGC 1 cut(s) 403
BspACI CCGC 3 cut(s) 1932, 2202, 2350
BspCNI CTCAG 5 cut(s) 311, 486, 1029, 1486, 2665
BspDI ATCGAT 1 cut(s) 212
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 7 cut(s) 976, 1327, 1775, 2164, 2390, 2391, 2711
BspMI ACCTGC 1 cut(s) 2681
BspPI GGATC 1 cut(s) 891
BspT104I TTCGAA 1 cut(s) 2075
BspTNI GGTCTC 2 cut(s) 1683, 2995
BsrDI GCAATG 2 cut(s) 261, 2253
BsrFI RCCGGY 2 cut(s) 266, 1242
BsrGI TGTACA 1 cut(s) 2238
BsrI ACTGG 4 cut(s) 612, 911, 1039, 2803
BssAI RCCGGY 2 cut(s) 266, 1242
BssECI CCNNGG 4 cut(s) 147, 675, 1598, 2166
BssNAI GTATAC 1 cut(s) 800
BssT1I CCWWGG 2 cut(s) 147, 675
Bst1107I GTATAC 1 cut(s) 800
Bst2UI CCWGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
Bst4CI ACNGT 5 cut(s) 1001, 1781, 2885, 2927, 3019
Bst6I CTCTTC 4 cut(s) 798, 1282, 1852, 2747
BstAUI TGTACA 1 cut(s) 2238
BstBI TTCGAA 1 cut(s) 2075
BstC8I GCNNGC 4 cut(s) 268, 984, 1115, 1813
BstEII GGTNACC 1 cut(s) 1037
BstF5I GGATG 9 cut(s) 167, 1127, 1624, 1793, 1928, 1999, 2346, 2353, 2993
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 2 cut(s) 285, 427
BstMAI GTCTC 8 cut(s) 351, 793, 1386, 1683, 2049, 2496, 2827, 2995
BstMWI GCNNNNNNNGC 5 cut(s) 240, 424, 1119, 1742, 2177
BstNI CCWGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
BstPI GGTNACC 1 cut(s) 1037
BstSCI CCNGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
BstSFI CTRYAG 1 cut(s) 2517
BstSLI GKGCMC 2 cut(s) 1777, 2393
BstV1I GCAGC 3 cut(s) 59, 267, 1678
BstV2I GAAGAC 3 cut(s) 432, 1890, 3033
BstX2I RGATCY 4 cut(s) 361, 883, 1228, 1387
BstYI RGATCY 4 cut(s) 361, 883, 1228, 1387
BstZ17I GTATAC 1 cut(s) 800
Bsu15I ATCGAT 1 cut(s) 212
BsuI GTATCC 2 cut(s) 2651, 2993
BsuTUI ATCGAT 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 2052
BtsCI GGATG 9 cut(s) 167, 1127, 1624, 1793, 1928, 1999, 2346, 2353, 2993
BtsIMutI CAGTG 4 cut(s) 605, 997, 1032, 1777
BveI ACCTGC 1 cut(s) 2681
Cac8I GCNNGC 4 cut(s) 268, 984, 1115, 1813
CaiI CAGNNNCTG 1 cut(s) 1871
CciI TCATGA 1 cut(s) 537
CfoI GCGC 2 cut(s) 285, 427
Cfr10I RCCGGY 2 cut(s) 266, 1242
Cfr13I GGNCC 9 cut(s) 761, 908, 975, 1326, 1773, 1774, 2389, 2390, 2709
ClaI ATCGAT 1 cut(s) 212
CsiI ACCWGGT 1 cut(s) 2833
Csp6I GTAC 7 cut(s) 499, 1203, 1556, 1868, 2239, 2935, 3046
CspAI ACCGGT 1 cut(s) 1242
CviQI GTAC 7 cut(s) 499, 1203, 1556, 1868, 2239, 2935, 3046
EaeI YGGCCR 4 cut(s) 115, 258, 994, 1120
Eam1104I CTCTTC 4 cut(s) 798, 1282, 1852, 2747
EarI CTCTTC 4 cut(s) 798, 1282, 1852, 2747
EciI GGCGGA 1 cut(s) 2339
Ecl136II GAGCTC 2 cut(s) 85, 2791
Eco130I CCWWGG 2 cut(s) 147, 675
Eco24I GRGCYC 4 cut(s) 87, 1777, 2393, 2793
Eco31I GGTCTC 2 cut(s) 1683, 2995
Eco32I GATATC 2 cut(s) 535, 1161
Eco47I GGWCC 4 cut(s) 761, 908, 975, 1326
Eco47III AGCGCT 1 cut(s) 426
Eco53kI GAGCTC 2 cut(s) 85, 2791
Eco57I CTGAAG 3 cut(s) 959, 1569, 1902
Eco88I CYCGRG 1 cut(s) 2495
Eco91I GGTNACC 1 cut(s) 1037
EcoICRI GAGCTC 2 cut(s) 85, 2791
EcoO109I RGGNCCY 3 cut(s) 975, 1773, 2389
EcoO65I GGTNACC 1 cut(s) 1037
EcoRI GAATTC 3 cut(s) 1427, 1520, 1603
EcoRII CCWGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
EcoRV GATATC 2 cut(s) 535, 1161
EcoT14I CCWWGG 2 cut(s) 147, 675
EcoT22I ATGCAT 2 cut(s) 1757, 2770
EcoT38I GRGCYC 4 cut(s) 87, 1777, 2393, 2793
ErhI CCWWGG 2 cut(s) 147, 675
FalI AAGNNNNNCTT 2 cut(s) 2235, 2267
FaqI GGGAC 3 cut(s) 1030, 1634, 1856
FauI CCCGC 1 cut(s) 2209
FauNDI CATATG 1 cut(s) 1900
FblI GTMKAC 4 cut(s) 799, 1011, 1943, 2734
Fnu4HI GCNGC 3 cut(s) 48, 281, 1692
FokI GGATG 9 cut(s) 174, 1114, 1611, 1800, 1915, 1986, 2333, 2340, 2980
FriOI GRGCYC 4 cut(s) 87, 1777, 2393, 2793
Fsp4HI GCNGC 3 cut(s) 48, 281, 1692
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 2 cut(s) 284, 426
GluI GCNGC 3 cut(s) 48, 281, 1692
GsuI CTGGAG 3 cut(s) 702, 2109, 2948
HaeII RGCGCY 1 cut(s) 428
HapII CCGG 3 cut(s) 267, 839, 1243
HhaI GCGC 2 cut(s) 285, 427
Hin6I GCGC 2 cut(s) 283, 425
HinP1I GCGC 2 cut(s) 283, 425
HindIII AAGCTT 2 cut(s) 1111, 1267
HpaII CCGG 3 cut(s) 267, 839, 1243
HphI GGTGA 6 cut(s) 1629, 1970, 2046, 2153, 2475, 2872
Hpy166II GTNNAC 6 cut(s) 605, 800, 1012, 1944, 2735, 3046
Hpy8I GTNNAC 6 cut(s) 605, 800, 1012, 1944, 2735, 3046
HpyCH4III ACNGT 5 cut(s) 1001, 1781, 2885, 2927, 3019
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 424, 1119, 1742, 2177
HspAI GCGC 2 cut(s) 283, 425
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
LmnI GCTCC 7 cut(s) 2168, 2203, 2343, 2398, 2788, 2796, 2967
Lsp1109I GCAGC 3 cut(s) 59, 267, 1678
LweI GCATC 6 cut(s) 59, 61, 152, 727, 2355, 3002
MabI ACCWGGT 1 cut(s) 2833
MaeIII GTNAC 6 cut(s) 205, 623, 665, 1037, 1958, 2378
MfeI CAATTG 3 cut(s) 172, 1350, 1991
MflI RGATCY 4 cut(s) 361, 883, 1228, 1387
MhlI GDGCHC 6 cut(s) 87, 1777, 2200, 2393, 2698, 2793
MlsI TGGCCA 3 cut(s) 117, 996, 1122
MluNI TGGCCA 3 cut(s) 117, 996, 1122
MlyI GAGTC 3 cut(s) 1838, 2264, 2650
MmeI TCCRAC 2 cut(s) 1108, 2766
Mox20I TGGCCA 3 cut(s) 117, 996, 1122
Mph1103I ATGCAT 2 cut(s) 1757, 2770
MroNI GCCGGC 1 cut(s) 266
MroXI GAANNNNTTC 2 cut(s) 1520, 2806
MscI TGGCCA 3 cut(s) 117, 996, 1122
Msp20I TGGCCA 3 cut(s) 117, 996, 1122
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 3 cut(s) 267, 839, 1243
MspR9I CCNGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
MunI CAATTG 3 cut(s) 172, 1350, 1991
Mva1269I GAATGC 4 cut(s) 711, 2171, 2692, 2900
MvaI CCWGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
MwoI GCNNNNNNNGC 5 cut(s) 240, 424, 1119, 1742, 2177
NaeI GCCGGC 1 cut(s) 268
NdeI CATATG 1 cut(s) 1900
NgoMIV GCCGGC 1 cut(s) 266
NlaIV GGNNCC 7 cut(s) 976, 1327, 1775, 2164, 2390, 2391, 2711
NmuCI GTSAC 3 cut(s) 205, 665, 1958
NsbI TGCGCA 1 cut(s) 284
NsiI ATGCAT 2 cut(s) 1757, 2770
NspV TTCGAA 1 cut(s) 2075
PaeR7I CTCGAG 1 cut(s) 2495
PagI TCATGA 1 cut(s) 537
PaqCI CACCTGC 1 cut(s) 2681
PctI GAATGC 4 cut(s) 711, 2171, 2692, 2900
PdiI GCCGGC 1 cut(s) 268
PdmI GAANNNNTTC 2 cut(s) 1520, 2806
PfeI GAWTC 9 cut(s) 97, 137, 340, 433, 1050, 1489, 2006, 2438, 2911
PfoI TCCNGGA 1 cut(s) 1338
PinAI ACCGGT 1 cut(s) 1242
PkrI GCNGC 3 cut(s) 49, 282, 1693
PleI GAGTC 3 cut(s) 1838, 2263, 2650
PpsI GAGTC 3 cut(s) 1838, 2263, 2650
PpuMI RGGWCCY 1 cut(s) 975
Psp124BI GAGCTC 2 cut(s) 87, 2793
Psp5II RGGWCCY 1 cut(s) 975
Psp6I CCWGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
PspEI GGTNACC 1 cut(s) 1037
PspGI CCWGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
PspN4I GGNNCC 7 cut(s) 976, 1327, 1775, 2164, 2390, 2391, 2711
PspOMI GGGCCC 2 cut(s) 1773, 2389
PspPI GGNCC 9 cut(s) 761, 908, 975, 1326, 1773, 1774, 2389, 2390, 2709
PspPPI RGGWCCY 1 cut(s) 975
PstNI CAGNNNCTG 1 cut(s) 1871
PsuI RGATCY 4 cut(s) 361, 883, 1228, 1387
PvuII CAGCTG 1 cut(s) 493
RsaI GTAC 7 cut(s) 500, 1204, 1557, 1869, 2240, 2936, 3047
RsaNI GTAC 7 cut(s) 499, 1203, 1556, 1868, 2239, 2935, 3046
SacI GAGCTC 2 cut(s) 87, 2793
SatI GCNGC 3 cut(s) 48, 281, 1692
Sau96I GGNCC 9 cut(s) 761, 908, 975, 1326, 1773, 1774, 2389, 2390, 2709
ScaI AGTACT 1 cut(s) 2936
SchI GAGTC 3 cut(s) 1838, 2264, 2650
ScrFI CCNGG 9 cut(s) 236, 1119, 1340, 1376, 1599, 1872, 2168, 2835, 2966
SduI GDGCHC 6 cut(s) 87, 1777, 2200, 2393, 2698, 2793
SexAI ACCWGGT 1 cut(s) 2833
SfaNI GCATC 6 cut(s) 59, 61, 152, 727, 2355, 3002
SfcI CTRYAG 1 cut(s) 2517
Sfr274I CTCGAG 1 cut(s) 2495
SfuI TTCGAA 1 cut(s) 2075
SinI GGWCC 4 cut(s) 761, 908, 975, 1326
SlaI CTCGAG 1 cut(s) 2495
SmlI CTYRAG 3 cut(s) 2252, 2495, 2507
SmoI CTYRAG 3 cut(s) 2252, 2495, 2507
SsiI CCGC 3 cut(s) 1932, 2202, 2350
SspI AATATT 4 cut(s) 653, 1287, 2593, 2652
SstI GAGCTC 2 cut(s) 87, 2793
StyD4I CCNGG 9 cut(s) 234, 1117, 1338, 1374, 1597, 1870, 2166, 2833, 2964
StyI CCWWGG 2 cut(s) 147, 675
TaaI ACNGT 5 cut(s) 1001, 1781, 2885, 2927, 3019
TaqI TCGA 4 cut(s) 212, 511, 2075, 2496
TatI WGTACW 3 cut(s) 2238, 2934, 3045
TfiI GAWTC 9 cut(s) 97, 137, 340, 433, 1050, 1489, 2006, 2438, 2911
TscAI CASTG 4 cut(s) 612, 1004, 1039, 1784
TseFI GTSAC 3 cut(s) 205, 665, 1958
TseI GCWGC 3 cut(s) 47, 280, 1691
Tsp45I GTSAC 3 cut(s) 205, 665, 1958
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 4 cut(s) 612, 1004, 1039, 1784
VpaK11BI GGWCC 4 cut(s) 761, 908, 975, 1326
XapI RAATTY 8 cut(s) 1096, 1366, 1427, 1520, 1564, 1603, 2315, 2717
XbaI TCTAGA 4 cut(s) 349, 1384, 1664, 1975
XhoI CTCGAG 1 cut(s) 2495
XmiI GTMKAC 4 cut(s) 799, 1011, 1943, 2734
XmnI GAANNNNTTC 2 cut(s) 1520, 2806
ZrmI AGTACT 1 cut(s) 2936
Zsp2I ATGCAT 2 cut(s) 1757, 2770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.