Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009371

Physical Location & Seq

Genomic Coordinates Reverse (-)

24272995 .. 24274860

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60335.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTAGCGAAGACAGTTTTCCCTAGAGGTCTCCTTGTTTTGAGAAGTTTCTCATCAGTTGCTTCAAAGACACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATATTAAGGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCGTAAAGCCGGATTTGAGAATCGCCTTGTCCACGGGATGCTTGTTTCTTCCATGTTTCCTCGTATCATCTCTGCCCATTTCCCTGGAGCAGTATACGTATCTCAAAGTCTGCATTTTCGGTCACCGGTTTACATAGGTGATGAAATTCTTGGATTGGTTCAAGCCATAGCTTTAAGAGAAACCAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCTTCAAGAACCACAACGAACTTGTTGTTATTGATGGTGAAGCTACTGCAATTTTACCAAACCTTGACATGTTGCAGAAAAGTCCTTCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00630 ko00650 ko01100 ko01110 ko01120 ko01130 ko01200 ko03008 map00230 map00630 map00650 map01100 map01110 map01120 map01130 map01200 map03008

Pfam Domains

Protein Families

MaoC_dehydratas

Protein Analysis

166

Amino Acids

18.58

Weight (kDa)

9.04

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MaoC_dehydratas	PF01575	34 - 124	3.1e-22	MaoC like domain
FAS1_DH_region	PF13452	36 - 145	3.3e-06	FAS1-like, dehydratase domain region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60335 AT5G60335 AT5G60335
malus_domestica	MD11G1129900.v1.1
prunus_persica	Prupe.6G094800_v2.0.a1 Prupe.6G094800_v2.0.a1
pyrus_communis	pycom11g10770
rosa_chinensis	RchiOBHm_Chr5g0060661
rosa_laevigata	RLG00000035379 RLG00000035398
rosa_multiflora	Rmu_sc0000864.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020130
rosa_rugosa	Rorug05G0331900 Rorug05G0332000 Rorug05G0332100 Rorug05G0332200 Rorug05G0332300
rosa_samantha	Rh5AG396000 Rh5BG408100 Rh5CG432700 Rh5DG423000
rosa_wichuraiana	Rw5G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	333, 392
AfaI	GTAC	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	474
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	66, 350, 412
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	359, 449
AluI	AGCT	2 cut(s)	359, 449
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	2 cut(s)	333, 392
AsiGI	ACCGGT	1 cut(s)	313
AsuHPI	GGTGA	4 cut(s)	157, 303, 338, 455
AsuNHI	GCTAGC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	5, 24
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	220, 271
BsaWI	WCCGGW	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	220, 271
BseGI	GGATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	198, 314
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	220, 271
BssMI	GATC	1 cut(s)	175
BssNAI	GTATAC	1 cut(s)	283
Bst1107I	GTATAC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	271
BstSNI	TACGTA	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	313
CviAII	CATG	3 cut(s)	152, 241, 475
CviJI	RGCY	6 cut(s)	134, 150, 197, 353, 359, 449
CviKI_1	RGCY	6 cut(s)	134, 150, 197, 353, 359, 449
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	309
EcoO65I	GGTNACC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	155, 244, 478
FaiI	YATR	7 cut(s)	138, 153, 242, 283, 323, 356, 476
FatI	CATG	3 cut(s)	151, 240, 474
FblI	GTMKAC	1 cut(s)	282
FokI	GGATG	1 cut(s)	238
FspBI	CTAG	2 cut(s)	5, 24
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	2 cut(s)	198, 314
Hin1II	CATG	3 cut(s)	155, 244, 478
HinfI	GANTC	2 cut(s)	182, 208
HpaII	CCGG	2 cut(s)	198, 314
HphI	GGTGA	4 cut(s)	157, 303, 338, 455
Hpy166II	GTNNAC	3 cut(s)	220, 283, 319
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	2 cut(s)	179, 412
Hpy8I	GTNNAC	3 cut(s)	220, 283, 319
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	301, 455, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	155, 244, 478
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	5 cut(s)	192, 211, 258, 285, 327
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	5, 24
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	22, 134, 228
MluCI	AATT	3 cut(s)	333, 392, 456
MnlI	CCTC	3 cut(s)	20, 136, 258
MseI	TTAA	4 cut(s)	78, 95, 129, 362
MspI	CCGG	2 cut(s)	198, 314
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	175
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	155, 244, 478
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	182, 208
PinAI	ACCGGT	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	286
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	78, 95, 129, 362
Sau3AI	GATC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	31, 147, 288, 328, 361, 451, 471
SfaNI	GCATC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SnaBI	TACGTA	1 cut(s)	286
Sse9I	AATT	3 cut(s)	333, 392, 456
SseBI	AGGCCT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	5, 24
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	333, 392, 456
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	182, 208
Tru1I	TTAA	4 cut(s)	78, 95, 129, 362
Tru9I	TTAA	4 cut(s)	78, 95, 129, 362
TseFI	GTSAC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	345
XapI	RAATTY	2 cut(s)	333, 392
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	5, 24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.