Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009371

Physical Location & Seq

Genomic Coordinates Forward (+)

40204629 .. 40205186

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAATGGCCGGAGATCCAGATATTCTTAGTGACTTCATTGCGCCCCCAAATAGAACAGTAGATGGAAACTTCTTCACATACACCGGCATGCGTGTTATCTTTCAAGAAGATCCCAAAAACTTCACAGTTCTGAAGGCAACCTCCGCTGAGTTCCCTGCTCTTAATGGTCAGAGTGTTTCATATGCAGTACTTGAATTCCCTTCTGGCACTACTAACCCACCTCACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGGCGGTTCCCTTGAAGTTGGCTTTGTCGACACAAAAAACAACCTCTTTACTCAGACTCTTCAGGTAGGTGACCTGTTTGTTTTTCCCAAGGGACTTGTACACTTCCAATACAATGCTGACTCAGAAAGCCCAGCTATAGCAATTTCTGCTTTTGGAAGTGCAAGTGCAGGAACTGTGTCAATTCCTTCCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTCAAGACTGACGTATCTACCATTCAAAAGCTTAAGGCTGGTCTCGCTCCCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00630 ko00650 ko01100 ko01110 ko01120 ko01130 ko01200 ko03008 map00230 map00630 map00650 map01100 map01110 map01120 map01130 map01200 map03008

Pfam Domains

Protein Families

MaoC_dehydratas

Protein Analysis

185

Amino Acids

19.72

Weight (kDa)

4.86

Isoelectric Point (pI)

24.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	39 - 174	5.5e-32	Cupin
Cupin_2	PF07883	64 - 138	5.9e-11	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60335 AT5G60335 AT5G60335
malus_domestica	MD11G1129900.v1.1
prunus_persica	Prupe.6G094800_v2.0.a1 Prupe.6G094800_v2.0.a1
pyrus_communis	pycom11g10770
rosa_chinensis	RchiOBHm_Chr5g0060661
rosa_laevigata	RLG00000035379 RLG00000035398
rosa_multiflora	Rmu_sc0000864.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020130
rosa_rugosa	Rorug05G0331900 Rorug05G0332000 Rorug05G0332100 Rorug05G0332200 Rorug05G0332300
rosa_samantha	Rh5AG396000 Rh5BG408100 Rh5CG432700 Rh5DG423000
rosa_wichuraiana	Rw5G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	2 cut(s)	147, 267
AclWI	GGATC	2 cut(s)	11, 107
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	155, 308
AfaI	GTAC	2 cut(s)	192, 363
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	107, 197, 278, 502, 524
AluBI	AGCT	3 cut(s)	250, 398, 529
AluI	AGCT	3 cut(s)	250, 398, 529
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	11, 107
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	530
BlpI	GCTNAGC	1 cut(s)	246
BmcAI	AGTACT	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	271
Bpu1102I	GCTNAGC	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	351
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	12, 39
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	12, 39
BseMII	CTCAG	4 cut(s)	141, 237, 329, 399
BseRI	GAGGAG	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	12, 87
BslFI	GGGAC	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	16, 112
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	147, 267
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	4 cut(s)	142, 238, 328, 398
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	11, 107
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	12, 39
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	16, 112
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	61, 130, 439
Bst6I	CTCTTC	2 cut(s)	260, 327
BstAFI	CTTAAG	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	5 cut(s)	29, 150, 246, 315, 385
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	19, 115
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	2 cut(s)	16, 112
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 410, 542
BstNSI	RCATGY	1 cut(s)	94
BstPI	GGTNACC	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	16, 112
BstYI	RGATCY	2 cut(s)	16, 112
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	191, 362
CviAII	CATG	2 cut(s)	91, 555
CviJI	RGCY	9 cut(s)	11, 250, 285, 393, 398, 491, 529, 536, 553
CviKI_1	RGCY	9 cut(s)	11, 250, 285, 393, 398, 491, 529, 536, 553
CviQI	GTAC	2 cut(s)	191, 362
DdeI	CTNAG	5 cut(s)	29, 150, 246, 315, 385
DpnI	GATC	2 cut(s)	18, 114
DpnII	GATC	2 cut(s)	16, 112
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	260, 327
EarI	CTCTTC	2 cut(s)	260, 327
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	155, 308
Eco91I	GGTNACC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	94, 558
FaiI	YATR	6 cut(s)	82, 92, 184, 186, 401, 556
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	2 cut(s)	90, 554
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	252
GlaI	GCGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	12, 87
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	94, 558
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	319, 383
HpaII	CCGG	2 cut(s)	12, 87
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	292, 364
Hpy188I	TCNGA	4 cut(s)	135, 174, 318, 388
Hpy188III	TCNNGA	3 cut(s)	20, 107, 502
Hpy8I	GTNNAC	2 cut(s)	292, 364
HpyAV	CCTTC	4 cut(s)	130, 213, 459, 508
HpyCH4III	ACNGT	3 cut(s)	61, 130, 439
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	188, 425, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 410, 542
HpyF3I	CTNAG	5 cut(s)	29, 150, 246, 315, 385
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	94, 558
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	16, 112
LmnI	GCTCC	2 cut(s)	255, 550
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	32, 332
MalI	GATC	2 cut(s)	18, 114
MboI	GATC	2 cut(s)	16, 112
MboII	GAAGA	4 cut(s)	67, 122, 247, 314
MflI	RGATCY	2 cut(s)	16, 112
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	197, 405, 444
MlyI	GAGTC	2 cut(s)	313, 377
MnlI	CCTC	5 cut(s)	154, 234, 246, 263, 317
MseI	TTAA	2 cut(s)	165, 531
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	12, 87
MwoI	GCNNNNNNNGC	3 cut(s)	146, 410, 542
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	16, 112
NlaIII	CATG	2 cut(s)	94, 558
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	32, 332
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	482
PleI	GAGTC	2 cut(s)	313, 377
PpsI	GAGTC	2 cut(s)	313, 377
Psp124BI	GAGCTC	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	16, 112
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	2 cut(s)	192, 363
RsaNI	GTAC	2 cut(s)	191, 362
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	165, 531
Sau3AI	GATC	2 cut(s)	16, 112
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	2 cut(s)	313, 377
SduI	GDGCHC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	197, 405, 444
SsiI	CCGC	2 cut(s)	147, 267
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	61, 130, 439
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	291, 474
TasI	AATT	3 cut(s)	197, 405, 444
TatI	WGTACW	2 cut(s)	190, 361
Tru1I	TTAA	2 cut(s)	165, 531
Tru9I	TTAA	2 cut(s)	165, 531
TseFI	GTSAC	2 cut(s)	32, 332
Tsp45I	GTSAC	2 cut(s)	32, 332
TspDTI	ATGAA	2 cut(s)	28, 171
Tth111I	GACNNNGTC	1 cut(s)	482
Vha464I	CTTAAG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.