RLG00000035379

Hydroxyacyl-thioester dehydratase type 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009371
Physical Location & Seq
Forward (+)
66073832 .. 66074506
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035379

Sequence Viewer

Length: 492 bp
ATGCTCTCTCGGAATTTAGTCCTCGGCAGACTACCTTCTCTGAGCGGATTTTCATCAGCAGCAGCTACTTTTCTTAAAACTGGAGATATATTAAAACAAGCTAGAATTTTCACAAGTGAAGATGTCTTAGAGTACTCTAAAGTGAGTCATGATTCTAGTCCTCTGCATTTTGATTCTGAGTCTGCCCGAAATGCTGGATTTGAAGACCGAGTGGTTCATGGGATGCTTGTTGCTGCACTGTTTCCCAAGATCATATCTTCTCATTTTCCTGAGGCTATATACATATCCCAAAGTCTGCATTTTAGTTTGCCATTCTATATTGGAGAAGAGATAGTTGGCGAGGTACAAGCAACTAGCATAAGAGAGCAAAAGAACAGATACTTAGCTAAATTCAAGACAGCATGCAATAAGGATGGTTCTGTTGTTATCGATGGTGAGGCTATGGCTATCTTACCTTTACTCACTATGGAACAAGTGACTACTTCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00630 ko00650 ko01100 ko01110 ko01120 ko01130 ko01200 ko03008 map00230 map00630 map00650 map01100 map01110 map01120 map01130 map01200 map03008
Pfam Domains
Protein Families
MaoC_dehydratas

Protein Analysis

164

Amino Acids

17.86

Weight (kDa)

5.93

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MaoC_dehydratas PF01575 34 - 125 5.8e-16 MaoC like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 1 cut(s) 45
AcsI RAATTY 3 cut(s) 13, 105, 389
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 134, 345
AgsI TTSAA 2 cut(s) 203, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 3 cut(s) 65, 101, 386
AluI AGCT 3 cut(s) 65, 101, 386
ApeKI GCWGC 3 cut(s) 59, 62, 233
ApoI RAATTY 3 cut(s) 13, 105, 389
AsuHPI GGTGA 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 71, 74, 220
BccI CCATC 2 cut(s) 407, 425
BfaI CTAG 3 cut(s) 102, 156, 354
BisI GCNGC 3 cut(s) 60, 63, 234
BlsI GCNGC 3 cut(s) 61, 64, 235
BmcAI AGTACT 1 cut(s) 134
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 228, 418
BseJI GATNNNNATC 1 cut(s) 52
BseMII CTCAG 3 cut(s) 32, 168, 261
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 3 cut(s) 71, 74, 220
BsgI GTGCAG 1 cut(s) 219
BshVI ATCGAT 1 cut(s) 429
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 3 cut(s) 33, 169, 262
BspDI ATCGAT 1 cut(s) 429
BspHI TCATGA 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 5 cut(s) 41, 127, 177, 270, 382
BstF5I GGATG 2 cut(s) 228, 418
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 71, 74, 220
BstV2I GAAGAC 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 2 cut(s) 228, 418
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 403
CciI TCATGA 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 133, 344
CviAII CATG 3 cut(s) 149, 218, 402
CviJI RGCY 6 cut(s) 65, 101, 275, 386, 440, 446
CviKI_1 RGCY 6 cut(s) 65, 101, 275, 386, 440, 446
CviQI GTAC 2 cut(s) 133, 344
DdeI CTNAG 5 cut(s) 41, 127, 177, 270, 382
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 270
FaeI CATG 3 cut(s) 152, 221, 405
FatI CATG 3 cut(s) 148, 217, 401
Fnu4HI GCNGC 3 cut(s) 60, 63, 234
FokI GGATG 2 cut(s) 235, 425
Fsp4HI GCNGC 3 cut(s) 60, 63, 234
FspBI CTAG 3 cut(s) 102, 156, 354
GluI GCNGC 3 cut(s) 60, 63, 234
GsuI CTGGAG 1 cut(s) 102
Hin1II CATG 3 cut(s) 152, 221, 405
HinfI GANTC 4 cut(s) 145, 152, 173, 179
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 12, 42, 178
Hpy188III TCNNGA 4 cut(s) 149, 269, 394, 486
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 166, 236, 298, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 5 cut(s) 41, 127, 177, 270, 382
Hsp92II CATG 3 cut(s) 152, 221, 405
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 4 cut(s) 66, 180, 282, 471
Lsp1109I GCAGC 3 cut(s) 71, 74, 220
LweI GCATC 1 cut(s) 213
MaeI CTAG 3 cut(s) 102, 156, 354
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 45
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 131, 215, 249, 338
MluCI AATT 3 cut(s) 13, 105, 389
MlyI GAGTC 2 cut(s) 154, 188
MnlI CCTC 5 cut(s) 32, 171, 265, 334, 430
MseI TTAA 2 cut(s) 75, 92
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 152, 221, 405
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PagI TCATGA 1 cut(s) 148
PfeI GAWTC 2 cut(s) 152, 173
PkrI GCNGC 3 cut(s) 61, 64, 235
PleI GAGTC 2 cut(s) 153, 187
PpsI GAGTC 2 cut(s) 153, 187
RsaI GTAC 2 cut(s) 134, 345
RsaNI GTAC 2 cut(s) 133, 344
SaqAI TTAA 2 cut(s) 75, 92
SatI GCNGC 3 cut(s) 60, 63, 234
Sau3AI GATC 1 cut(s) 249
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 2 cut(s) 154, 188
SetI ASST 6 cut(s) 37, 67, 103, 345, 388, 457
SfaNI GCATC 1 cut(s) 213
SphI GCATGC 1 cut(s) 405
Sse9I AATT 3 cut(s) 13, 105, 389
SsiI CCGC 1 cut(s) 45
SspMI CTAG 3 cut(s) 102, 156, 354
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 429
TaqII GACCGA 1 cut(s) 222
TasI AATT 3 cut(s) 13, 105, 389
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 152, 173
Tru1I TTAA 2 cut(s) 75, 92
Tru9I TTAA 2 cut(s) 75, 92
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 3 cut(s) 59, 62, 233
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 42, 206
TspRI CASTG 1 cut(s) 243
XapI RAATTY 3 cut(s) 13, 105, 389
XceI RCATGY 1 cut(s) 405
XspI CTAG 3 cut(s) 102, 156, 354
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.