Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009371

Physical Location & Seq

Genomic Coordinates Reverse (-)

9169687 .. 9170736

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCTCGTACGAGCAACTTCGGAATAATGTGCGCAAAAAATGAAGGCTTCCACTTCACCCTAGCAATTTATGCAAAAAACAAAATTGCCCATGATCCTGAAACATTGTGTGAATTGCAGATTGATGGTGCAGGTGTGAGCATATATTGCAAGCGTAGAATCAACGTAGTTTTGACGGGCTACTACTCTGTTGGAGAGCGTTTAGAAACGGTTACAGTTATGCTTGGCCGGAACTTACTCTCAGTCAACCTACCTTCTTTGAGAGGTTTTTCATCAGCAGCAGCTGGTTTTCTTAGAAGTGGAGATACATTGAAGCAAAATAGGGTATTCACCAAAGAAGATGTTTTGGAGTACTCAAAAGTGAGTCATGACTCTAACCCTCTGCATTTAGATTCCGAGGCTGCTCGAAATGCTGGATTTGAAGATCAACTGGTTCATGGGATGCTTGTTGCTGCCCTGTTCCCCAAGATCATATCTTCTCATTTTCCCGGGGCTATATATGTTTCCCAAAGCTTGCATTTCAGGTTGCCTGTCTATATTGGAGAAGAGATAGTTGGTGAGGTACAAGCAACCAACATAAGAGAACAGAAGAACAGATATCTAGTGAAATTCAAGACGGCATGCTTCAAGAATGGTGCTACCGCCATTGACGGTGAGGCTATGGCCATCGTGCCTACACTGGCTGCAGAACAAGCGAGTACTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00630 ko00650 ko01100 ko01110 ko01120 ko01130 ko01200 ko03008 map00230 map00630 map00650 map01100 map01110 map01120 map01130 map01200 map03008

Pfam Domains

Protein Families

MaoC_dehydratas

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

7.05

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MaoC_dehydratas	PF01575	106 - 199	2.3e-19	MaoC like domain
FAS1_DH_region	PF13452	109 - 204	3.6e-06	FAS1-like, dehydratase domain region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60335 AT5G60335 AT5G60335
malus_domestica	MD11G1129900.v1.1
prunus_persica	Prupe.6G094800_v2.0.a1 Prupe.6G094800_v2.0.a1
pyrus_communis	pycom11g10770
rosa_chinensis	RchiOBHm_Chr5g0060661
rosa_laevigata	RLG00000035379 RLG00000035398
rosa_multiflora	Rmu_sc0000864.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020130
rosa_rugosa	Rorug05G0331900 Rorug05G0332000 Rorug05G0332100 Rorug05G0332200 Rorug05G0332300
rosa_samantha	Rh5AG396000 Rh5BG408100 Rh5CG432700 Rh5DG423000
rosa_wichuraiana	Rw5G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	226, 663
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	4 cut(s)	10, 353, 564, 700
AgsI	TTSAA	4 cut(s)	313, 422, 613, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	2 cut(s)	284, 513
AluI	AGCT	2 cut(s)	284, 513
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	226, 663
ApeKI	GCWGC	5 cut(s)	278, 281, 401, 452, 683
ApoI	RAATTY	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	2 cut(s)	489, 490
AsuHPI	GGTGA	4 cut(s)	49, 322, 569, 665
AvaI	CYCGRG	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	665
BarI	GAAGNNNNNNTAC	2 cut(s)	289, 321
BbvI	GCAGC	5 cut(s)	290, 293, 388, 439, 670
BccI	CCATC	2 cut(s)	119, 674
BceAI	ACGGC	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	489, 490
BfaI	CTAG	2 cut(s)	62, 602
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	5 cut(s)	279, 282, 402, 453, 684
BlsI	GCNGC	5 cut(s)	280, 283, 403, 454, 685
BmcAI	AGTACT	2 cut(s)	353, 700
Bme1390I	CCNGG	2 cut(s)	489, 490
BmeT110I	CYCGRG	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	489, 490
BmsI	GCATC	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	489, 490
BsaJI	CCNNGG	3 cut(s)	396, 488, 489
Bse1I	ACTGG	2 cut(s)	435, 684
BseDI	CCNNGG	3 cut(s)	396, 488, 489
BseGI	GGATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	435, 684
BseXI	GCAGC	5 cut(s)	290, 293, 388, 439, 670
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	228, 665
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	229, 489
BsiWI	CGTACG	1 cut(s)	8
BsnI	GGCC	2 cut(s)	228, 665
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	94, 424, 468
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	2 cut(s)	228, 665
BspCNI	CTCAG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	435, 684
BssECI	CCNNGG	3 cut(s)	396, 488, 489
BssMI	GATC	3 cut(s)	94, 424, 468
Bst4CI	ACNGT	3 cut(s)	211, 217, 653
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	71, 147
BstC8I	GCNNGC	3 cut(s)	152, 515, 622
BstDEI	CTNAG	2 cut(s)	241, 293
BstF5I	GGATG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	97, 427, 471
BstMBI	GATC	3 cut(s)	94, 424, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 147, 410, 692
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	487, 488
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	5 cut(s)	290, 293, 388, 439, 670
BsuRI	GGCC	2 cut(s)	228, 665
BtsCI	GGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	677
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	152, 515, 622
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	35
Cfr9I	CCCGGG	1 cut(s)	488
Csp6I	GTAC	4 cut(s)	9, 352, 563, 699
CviAII	CATG	4 cut(s)	92, 368, 437, 621
CviQI	GTAC	4 cut(s)	9, 352, 563, 699
DdeI	CTNAG	2 cut(s)	241, 293
DpnI	GATC	3 cut(s)	96, 426, 470
DpnII	GATC	3 cut(s)	94, 424, 468
EaeI	YGGCCR	2 cut(s)	226, 663
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	599
FaeI	CATG	4 cut(s)	95, 371, 440, 624
FatI	CATG	4 cut(s)	91, 367, 436, 620
Fnu4HI	GCNGC	5 cut(s)	279, 282, 402, 453, 684
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	5 cut(s)	279, 282, 402, 453, 684
FspBI	CTAG	2 cut(s)	62, 602
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	279, 282, 402, 453, 684
HaeIII	GGCC	2 cut(s)	228, 665
HapII	CCGG	2 cut(s)	229, 489
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	95, 371, 440, 624
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	511
HinfI	GANTC	4 cut(s)	159, 364, 371, 392
HpaII	CCGG	2 cut(s)	229, 489
HphI	GGTGA	4 cut(s)	49, 322, 569, 665
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	23, 397
Hpy188III	TCNNGA	4 cut(s)	98, 368, 613, 628
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	38, 264
HpyCH4III	ACNGT	3 cut(s)	211, 217, 653
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	7 cut(s)	74, 118, 131, 150, 385, 517, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 147, 410, 692
HpyF3I	CTNAG	2 cut(s)	241, 293
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	95, 371, 440, 624
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	94, 424, 468
Lsp1109I	GCAGC	5 cut(s)	290, 293, 388, 439, 670
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	62, 602
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	96, 426, 470
MboI	GATC	3 cut(s)	94, 424, 468
MboII	GAAGA	5 cut(s)	350, 434, 468, 557, 601
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	4 cut(s)	66, 84, 113, 608
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	2 cut(s)	365, 373
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	15, 257, 390, 391, 553, 649
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	229, 489
MspR9I	CCNGG	2 cut(s)	489, 490
MwoI	GCNNNNNNNGC	4 cut(s)	71, 147, 410, 692
NciI	CCSGG	2 cut(s)	489, 490
NdeII	GATC	3 cut(s)	94, 424, 468
NlaIII	CATG	4 cut(s)	95, 371, 440, 624
NsbI	TGCGCA	1 cut(s)	34
NspI	RCATGY	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	624
PagI	TCATGA	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	159, 392
Pfl23II	CGTACG	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	280, 283, 403, 454, 685
PleI	GAGTC	2 cut(s)	365, 372
PpsI	GAGTC	2 cut(s)	365, 372
PspLI	CGTACG	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	4 cut(s)	10, 353, 564, 700
RsaNI	GTAC	4 cut(s)	9, 352, 563, 699
SatI	GCNGC	5 cut(s)	279, 282, 402, 453, 684
Sau3AI	GATC	3 cut(s)	94, 424, 468
ScaI	AGTACT	2 cut(s)	353, 700
SchI	GAGTC	2 cut(s)	365, 373
ScrFI	CCNGG	2 cut(s)	489, 490
SetI	ASST	9 cut(s)	136, 168, 252, 256, 268, 286, 515, 527, 564
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	684
SmaI	CCCGGG	1 cut(s)	490
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	4 cut(s)	66, 84, 113, 608
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	2 cut(s)	62, 602
StyD4I	CCNGG	2 cut(s)	487, 488
TaaI	ACNGT	3 cut(s)	211, 217, 653
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	406
TasI	AATT	4 cut(s)	66, 84, 113, 608
TatI	WGTACW	2 cut(s)	351, 698
TfiI	GAWTC	2 cut(s)	159, 392
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	5 cut(s)	278, 281, 401, 452, 683
TspDTI	ATGAA	3 cut(s)	57, 261, 425
TspMI	CCCGGG	1 cut(s)	488
TspRI	CASTG	1 cut(s)	684
XapI	RAATTY	1 cut(s)	608
XceI	RCATGY	1 cut(s)	624
XmaI	CCCGGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	62, 602
ZrmI	AGTACT	2 cut(s)	353, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.