Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009371

Physical Location & Seq

Genomic Coordinates Reverse (-)

11793922 .. 11795527

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1129900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTGGCCGGAACTTACTCTCAGTCAACCTACTTTCTTTAAGAGGTTTTTCATCAGCAGCAGCTGGTTTTCTTAGAAGTGGAGATACATTGAAGCAAAATAGAGTATTCACCAATGAAGATGTTTTGGAGTACTCAAAAGTGAGTCATGACTCTAACCCTCTGCATTTAGATTCCGAGGCTGCTCAAAATGCTGGATTTGAAGATCGACTGGTTCACGGGATGCTTGTTGCTGCCCTGTTCCCCAAGATCATATCTTCTCATTTTCCCGGCGCTATATATGTTTCCCAAAGCTTGCATTTCAGGTTGCCTGTCTATATTGGAGAAGAGATAGTTGGTGAGGTACAAGCAACTAACATAAGAGAACAGAAGAACAGATATCTAGTGAAATTCAAGACGGCATGCTTCAAGAATGGTGCTACCGTCATCGATGGTGAGGCTATGGCCATCTTGCCTACACTGGTTGCAGAACAAACGAGTACTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00630 ko00650 ko01100 ko01110 ko01120 ko01130 ko01200 ko03008 map00230 map00630 map00650 map01100 map01110 map01120 map01130 map01200 map03008

Pfam Domains

Protein Families

MaoC_dehydratas

Protein Analysis

164

Amino Acids

17.9

Weight (kDa)

6.2

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MaoC_dehydratas	PF01575	33 - 126	2.7e-20	MaoC like domain
FAS1_DH_region	PF13452	36 - 143	7e-06	FAS1-like, dehydratase domain region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60335 AT5G60335 AT5G60335
malus_domestica	MD11G1129900.v1.1
prunus_persica	Prupe.6G094800_v2.0.a1 Prupe.6G094800_v2.0.a1
pyrus_communis	pycom11g10770
rosa_chinensis	RchiOBHm_Chr5g0060661
rosa_laevigata	RLG00000035379 RLG00000035398
rosa_multiflora	Rmu_sc0000864.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020130
rosa_rugosa	Rorug05G0331900 Rorug05G0332000 Rorug05G0332100 Rorug05G0332200 Rorug05G0332300
rosa_samantha	Rh5AG396000 Rh5BG408100 Rh5CG432700 Rh5DG423000
rosa_wichuraiana	Rw5G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	7, 444
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	3 cut(s)	134, 345, 481
AgsI	TTSAA	4 cut(s)	94, 203, 394, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	2 cut(s)	65, 294
AluI	AGCT	2 cut(s)	65, 294
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	7, 444
ApeKI	GCWGC	4 cut(s)	59, 62, 182, 233
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	103, 350, 446
BalI	TGGCCA	1 cut(s)	446
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BbvI	GCAGC	4 cut(s)	71, 74, 169, 220
BccI	CCATC	2 cut(s)	425, 455
BceAI	ACGGC	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	4 cut(s)	60, 63, 183, 234
BlsI	GCNGC	4 cut(s)	61, 64, 184, 235
BmcAI	AGTACT	2 cut(s)	134, 481
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	2 cut(s)	216, 465
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	216, 465
BseXI	GCAGC	4 cut(s)	71, 74, 169, 220
BshFI	GGCC	2 cut(s)	9, 446
BshVI	ATCGAT	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	10, 270
BsnI	GGCC	2 cut(s)	9, 446
Bsp143I	GATC	2 cut(s)	205, 249
BspANI	GGCC	2 cut(s)	9, 446
BspCNI	CTCAG	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	216, 465
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	205, 249
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	296, 403
BstDEI	CTNAG	2 cut(s)	22, 74
BstF5I	GGATG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	208, 252
BstMBI	GATC	2 cut(s)	205, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	4 cut(s)	71, 74, 169, 220
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	9, 446
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	296, 403
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	133, 344, 480
CviAII	CATG	2 cut(s)	149, 402
CviJI	RGCY	6 cut(s)	9, 65, 182, 294, 440, 446
CviKI_1	RGCY	6 cut(s)	9, 65, 182, 294, 440, 446
CviQI	GTAC	3 cut(s)	133, 344, 480
DdeI	CTNAG	2 cut(s)	22, 74
DpnI	GATC	2 cut(s)	207, 251
DpnII	GATC	2 cut(s)	205, 249
EaeI	YGGCCR	2 cut(s)	7, 444
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	380
FaeI	CATG	2 cut(s)	152, 405
FaiI	YATR	9 cut(s)	150, 254, 278, 280, 282, 318, 359, 403, 443
FatI	CATG	2 cut(s)	148, 401
Fnu4HI	GCNGC	4 cut(s)	60, 63, 183, 234
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	60, 63, 183, 234
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	60, 63, 183, 234
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	9, 446
HapII	CCGG	2 cut(s)	10, 270
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	152, 405
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	3 cut(s)	145, 152, 173
HpaII	CCGG	2 cut(s)	10, 270
HphI	GGTGA	3 cut(s)	103, 350, 446
Hpy166II	GTNNAC	2 cut(s)	28, 217
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	149, 394, 409
Hpy8I	GTNNAC	2 cut(s)	28, 217
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	166, 298, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	22, 74
Hsp92II	CATG	2 cut(s)	152, 405
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	205, 249
LpnPI	CCDG	9 cut(s)	23, 51, 180, 197, 251, 283, 289, 324, 446
Lsp1109I	GCAGC	4 cut(s)	71, 74, 169, 220
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	383
MalI	GATC	2 cut(s)	207, 251
MboI	GATC	2 cut(s)	205, 249
MboII	GAAGA	5 cut(s)	131, 215, 249, 338, 382
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	146, 154
MnlI	CCTC	5 cut(s)	38, 171, 172, 334, 430
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	10, 270
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	205, 249
NlaIII	CATG	2 cut(s)	152, 405
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	61, 64, 184, 235
PleI	GAGTC	2 cut(s)	146, 153
PpsI	GAGTC	2 cut(s)	146, 153
PstNI	CAGNNNCTG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	134, 345, 481
RsaNI	GTAC	3 cut(s)	133, 344, 480
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	4 cut(s)	60, 63, 183, 234
Sau3AI	GATC	2 cut(s)	205, 249
ScaI	AGTACT	2 cut(s)	134, 481
SchI	GAGTC	2 cut(s)	146, 154
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	6 cut(s)	33, 49, 67, 296, 308, 345
SfaNI	GCATC	1 cut(s)	213
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	208, 429
TasI	AATT	1 cut(s)	389
TatI	WGTACW	2 cut(s)	132, 479
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	4 cut(s)	59, 62, 182, 233
TspDTI	ATGAA	2 cut(s)	42, 132
TspRI	CASTG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	405
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	2 cut(s)	134, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.