AT5G61210

snap33, atsnap33, snp33, atsnap33b snap33 (soluble n-ethylmaleimide-sensitive factor adaptor protein 33)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24623248 .. 24625631
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61210.1

Sequence Viewer

Length: 903 bp
ATGTTTGGTTTAAGGAAATCACCGGCAAATCTTCCCAAGCATAACTCAGTCGACCTCAAGTCTTCCAAGCCAAATCCTTTCGATTCAGATGATGAATCTGACAACAAACATACCCTTAACCCTTCTAAGAGGACTACCTCTGAACCCTCTTTGGCTGATATGACAAACCCTTTTGGTGGTGAGAGAGTTCAGAAAGGAGATAGTAGTTCATCCAAACAGTCATTGTTTTCGAACTCCAAATACCAGTACAAGAACAATTTCCGTGATTCTGGTGGTATTGAAAACCAGTCGGTTCAGGAGCTTGAAGGTTATGCTGTGTACAAGGCTGAAGAGACTACGAAATCTGTACAAGGTTGTTTGAAGGTAGCAGAAGATATAAGGTCTGATGCTACCAGAACTTTGGTCATGTTACACGATCAGGGCGAGCAAATCACTAGGACGCACCATAAAGCCGTTGAAATCGACCATGATCTCAGTCGTGGTGAGAAACTTCTTGGAAGCCTTGGAGGCATGTTTTCAAAGACTTGGAAACCAAAGAAGACTCGTCCTATAAATGGTCCCGTCGTAACCAGAGATGACTCACCAACGAGAAGAGTTAACCACTTAGAGAAAAGGGAAAAACTGGGACTGAACTCAGCACCCAGAGGACAATCAAGAACCCGAGAACCACTCCCCGAATCAGCTGATGCTTATCAGAGAGTGGAGATGGAAAAAGCTAAGCAAGACGATGGGCTTTCAGACTTGAGTGATATACTCGGCGAGCTAAAGAACATGGCTGTTGACATGGGAAGCGAAATCGAGAAGCAGAACAAAGGACTTGACCATCTTCATGATGATGTTGACGAACTCAACTTCAGAGTGCAACAATCAAACCAACGTGGTCGCCGTTTGCTTGGAAAGTAG

Protein Analysis

300

Amino Acids

33.64

Weight (kDa)

7.82

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012796)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61210 AT5G61210
fragaria_vesca FvH4_5g14310
malus_domestica MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica Prupe.5G201000_v2.0.a1
pyrus_communis pycom06g17650 pycom14g17240
rosa_chinensis RchiOBHm_Chr7g0182581
rosa_laevigata RLG00000005119
rosa_multiflora Rmu_sc0005811.1_g000006
rosa_roxburghii Rroxscaffold_3G00271140
rosa_rugosa Rorug06G0448400
rosa_samantha Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana Rw7G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 348, 838
AfaI GTAC 3 cut(s) 248, 320, 348
AfiI CCNNNNNNNGG 2 cut(s) 176, 554
AgsI TTSAA 5 cut(s) 281, 305, 361, 458, 519
AhdI GACNNNNNGTC 1 cut(s) 58
AluBI AGCT 4 cut(s) 301, 683, 716, 763
AluI AGCT 4 cut(s) 301, 683, 716, 763
Alw26I GTCTC 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 660
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 4 cut(s) 12, 191, 494, 573
AsuII TTCGAA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 54, 545
BccI CCATC 3 cut(s) 700, 722, 831
BceAI ACGGC 2 cut(s) 437, 870
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 507
BlpI GCTNAGC 1 cut(s) 717
Bme18I GGWCC 1 cut(s) 557
BmeRI GACNNNNNGTC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 559
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 376, 676
BmuI ACTGGG 1 cut(s) 632
BpiI GAAGAC 2 cut(s) 54, 545
BplI GAGNNNNNCTC 2 cut(s) 654, 686
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 2 cut(s) 41, 763
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 554
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 244, 286, 627
Bse8I GATNNNNATC 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 209
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 176, 554
BseMII CTCAG 3 cut(s) 60, 487, 648
BseNI ACTGG 3 cut(s) 244, 286, 627
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 543, 639
BslI CCNNNNNNNGG 2 cut(s) 176, 554
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 2 cut(s) 543, 639
BsoBI CYCGRG 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 230
Bsp1407I TGTACA 2 cut(s) 318, 346
Bsp143I GATC 2 cut(s) 415, 469
Bsp1720I GCTNAGC 1 cut(s) 717
BspCNI CTCAG 3 cut(s) 59, 486, 647
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 2 cut(s) 318, 346
BsrI ACTGG 3 cut(s) 244, 286, 627
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 2 cut(s) 415, 469
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 324, 586
BstAUI TGTACA 2 cut(s) 318, 346
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 425, 761
BstDEI CTNAG 6 cut(s) 46, 126, 473, 604, 634, 717
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 2 cut(s) 418, 472
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 415, 469
BstMWI GCNNNNNNNGC 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 514
BstV2I GAAGAC 2 cut(s) 54, 545
BstXI CCANNNNNNTGG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 425, 761
CciI TCATGA 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 557
CseI GACGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 247, 319, 347
CviAII CATG 6 cut(s) 406, 467, 511, 772, 784, 830
CviQI GTAC 3 cut(s) 247, 319, 347
DdeI CTNAG 6 cut(s) 46, 126, 473, 604, 634, 717
DpnI GATC 2 cut(s) 417, 471
DpnII GATC 2 cut(s) 415, 469
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 324, 586
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 2 cut(s) 324, 586
Eco130I CCWWGG 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 2 cut(s) 348, 838
Eco88I CYCGRG 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 6 cut(s) 409, 470, 514, 775, 787, 833
FaqI GGGAC 2 cut(s) 543, 639
FatI CATG 6 cut(s) 405, 466, 510, 771, 783, 829
FblI GTMKAC 1 cut(s) 51
FokI GGATG 1 cut(s) 196
FspBI CTAG 1 cut(s) 435
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 448
Hin1II CATG 6 cut(s) 409, 470, 514, 775, 787, 833
HincII GTYRAC 4 cut(s) 52, 598, 781, 841
HindII GTYRAC 4 cut(s) 52, 598, 781, 841
HinfI GANTC 6 cut(s) 83, 95, 266, 541, 578, 677
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 1 cut(s) 23
HphI GGTGA 4 cut(s) 12, 191, 494, 573
Hpy166II GTNNAC 5 cut(s) 52, 319, 598, 781, 841
Hpy188I TCNGA 8 cut(s) 88, 100, 142, 192, 385, 696, 739, 857
Hpy188III TCNNGA 4 cut(s) 296, 654, 799, 830
Hpy8I GTNNAC 5 cut(s) 52, 319, 598, 781, 841
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 3 cut(s) 132, 299, 355
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 1 cut(s) 862
HpyF10VI GCNNNNNNNGC 1 cut(s) 507
HpyF3I CTNAG 6 cut(s) 46, 126, 473, 604, 634, 717
HpySE526I ACGT 1 cut(s) 877
Hsp92II CATG 6 cut(s) 409, 470, 514, 775, 787, 833
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 2 cut(s) 415, 469
LmnI GCTCC 1 cut(s) 298
LweI GCATC 2 cut(s) 376, 676
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 2 cut(s) 408, 565
MalI GATC 2 cut(s) 417, 471
MboI GATC 2 cut(s) 415, 469
MboII GAAGA 7 cut(s) 23, 54, 341, 383, 550, 603, 818
MluCI AATT 1 cut(s) 256
MlyI GAGTC 2 cut(s) 535, 572
MnlI CCTC 6 cut(s) 65, 123, 148, 157, 500, 638
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 11, 117, 597
MslI CAYNNNNRTG 2 cut(s) 828, 834
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 507
NdeII GATC 2 cut(s) 415, 469
NlaIII CATG 6 cut(s) 409, 470, 514, 775, 787, 833
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 735
NspI RCATGY 1 cut(s) 514
NspV TTCGAA 1 cut(s) 230
PagI TCATGA 1 cut(s) 829
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 883
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 83, 95, 266, 677
PleI GAGTC 2 cut(s) 535, 572
PpsI GAGTC 2 cut(s) 535, 572
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 557
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 3 cut(s) 248, 320, 348
RsaNI GTAC 3 cut(s) 247, 319, 347
RseI CAYNNNNRTG 2 cut(s) 828, 834
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 11, 117, 597
Sau3AI GATC 2 cut(s) 415, 469
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 2 cut(s) 535, 572
SfaNI GCATC 2 cut(s) 376, 676
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 2 cut(s) 828, 834
SmlI CTYRAG 2 cut(s) 56, 742
SmoI CTYRAG 2 cut(s) 56, 742
Sse9I AATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 880
TaqI TCGA 5 cut(s) 51, 81, 230, 462, 798
TasI AATT 1 cut(s) 256
TatI WGTACW 3 cut(s) 246, 318, 346
TfiI GAWTC 4 cut(s) 83, 95, 266, 677
Tru1I TTAA 3 cut(s) 11, 117, 597
Tru9I TTAA 3 cut(s) 11, 117, 597
TspDTI ATGAA 3 cut(s) 108, 198, 818
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 557
XceI RCATGY 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.